Works matching DE "EXTRACHROMOSOMAL DNA"

Results: 554

Resolving spatial subclonal genomic heterogeneity of loss of heterozygosity and extrachromosomal DNA in gliomas.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-59805-z

By:

Webb, Michelle G.;
Chow, Frances;
McCullough, Carmel G.;
Zhang, Bohan;
Lee, John J. Y.;
Bassiouni, Rania;
Garrett III, Norman E.;
Hurth, Kyle;
Carpten, John D.;
Zada, Gabriel;
Craig, David W.

Publication type:

Article

Initial Screening of Extrachromosomal Circular DNA Candidates for Pork Meat Quality Traits Using Circle-Seq and RNA-Seq Analysis.

Published in:

Animals (2076-2615), 2025, v. 15, n. 11, p. 1590, doi. 10.3390/ani15111590

By:

Bai, Liyao;
Wu, Jiahao;
Dou, Tengfei;
Chu, Donghui;
Li, Xinjian;
Han, Xuelei;
Qiao, Ruimin;
Wang, Kejun;
Yang, Feng;
Li, Xiuling

Publication type:

Article

Identification and characterization of eccDNA-driven genes in humans.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0324438

By:

Gu, Yuxi;
Song, Yidan;
Liu, Jun

Publication type:

Article

Characterization of Extrachromosomal Circular DNA in Primary and Cisplatin-Resistant High-Grade Serous Ovarian Cancer.

Published in:

Genes, 2025, v. 16, n. 5, p. 517, doi. 10.3390/genes16050517

By:

Wang, Youya;
Li, He;
Li, Qinglan;
Li, Yi;
Wu, Hao;
Ge, Yan;
Zhu, Xingnuo;
Zheng, Zhiguo;
Sun, Zhongsheng

Publication type:

Article

Archaea: Viral exclusion order.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 1, p. 4, doi. 10.1038/nrmicro2067

By:

Jermy, Andrew

Publication type:

Article

Translation initiation factor 3 families: what are their roles in regulating cyanobacterial and chloroplast gene expression?

Published in:

Photosynthesis Research, 2015, v. 126, n. 1, p. 147, doi. 10.1007/s11120-015-0074-4

By:

Nesbit, April;
Whippo, Craig;
Hangarter, Roger;
Kehoe, David

Publication type:

Article

Plasmid- and chromosome-encoded siderophore anguibactin systems found in marine vibrios: biosynthesis, transport and evolution.

Published in:

BioMetals, 2013, v. 26, n. 4, p. 537, doi. 10.1007/s10534-013-9629-z

By:

Naka, Hiroaki;
Liu, Moqing;
Actis, Luis;
Crosa, Jorge

Publication type:

Article

Global characterization of extrachromosomal circular DNAs in four body fluids.

Published in:

International Journal of Legal Medicine, 2025, v. 139, n. 3, p. 1053, doi. 10.1007/s00414-025-03442-0

By:

Jiang, Lanrui;
Song, Mengyuan;
Song, Feng;
Wang, Shuangshuang;
Zhou, Yuxiang;
Wang, Zefei;
Sun, Chaoran;
Yao, Hewen;
Zhang, Zhirui;
Wang, Xindi;
Liao, Miao;
Wang, Yanyun;
Luo, Haibo

Publication type:

Article

Retraction Note to: Compensatory role of the NBCn1 sodium/bicarbonate cotransporter on Ca2+-induced mitochondrial swelling in hypertrophic hearts.

Published in:

Basic Research in Cardiology, 2018, v. 113, n. 3, p. 1, doi. 10.1007/s00395-018-0680-3

By:

Vargas, Lorena A.;
Velasquez, Fernanda Carrizo;
Alvarez, Bernardo V.

Publication type:

Article

Chloroplast DNA haplotypes in NordicSilene dioica:postglacial immigration from the east and the south.

Published in:

Plant Systematics & Evolution, 2005, v. 250, n. 1/2, p. 27, doi. 10.1007/s00606-004-0225-0

By:

Malm, J. U.;
Prentice, H. C.

Publication type:

Article

Delimitation of Malagasy tribe Coleeae and implications for fruit evolution in Bignoniaceae inferred from a chloroplast DNA phylogeny.

Published in:

Plant Systematics & Evolution, 2004, v. 245, n. 1/2, p. 55, doi. 10.1007/s00606-003-0025-y

By:

Zjhra, M. L.;
Sytsma, K. J.;
Olmstead, R. G.

Publication type:

Article

An integrated molecular and morphological study of the subfamily Suaedoideae Ulbr. (Chenopodiaceae).

Published in:

Plant Systematics & Evolution, 2003, v. 239, n. 3/4, p. 257, doi. 10.1007/s00606-003-0013-2

By:

Sch&uumltze;, P.;
Freitag, H.;
Weising, K.

Publication type:

Article

Principal features of the cpDNA evolution in Taraxacum (Asteraceae, Lactuceae): a conflict with taxonomy.

Published in:

Plant Systematics & Evolution, 2003, v. 239, n. 3/4, p. 231, doi. 10.1007/s00606-003-0002-5

By:

Kirschner, J.;
Štěpanek, J.;
Mes, T. H. M.;
Nijs, J. C. M. den;
Oosterveld, P.;
Štorchová, H.;
Kuperus, P.

Publication type:

Article

Understanding the distinguishable structural and functional features in zebrafish TLR3 and TLR22, and their binding modes with fish dsRNA viruses: an exploratory structural model analysis.

Published in:

Amino Acids, 2015, v. 47, n. 2, p. 381, doi. 10.1007/s00726-014-1872-2

By:

Sahoo, Bikash;
Dikhit, Manas;
Bhoi, Gopal;
Maharana, Jitendra;
Lenka, Santosh;
Dubey, Praveen;
Tiwari, Dharmendra

Publication type:

Article

Insights into Extrachromosomal DNA in Cancer: Biogenesis, Methodologies, Functions, and Therapeutic Potential.

Published in:

Advanced Biology, 2025, v. 9, n. 3, p. 1, doi. 10.1002/adbi.202400433

By:

Mao, Xudong;
Rao, Guocheng;
Li, Gonghui;
Chen, Shihan

Publication type:

Article

Rearrangement processes and structural variations show evidence of selection in oesophageal adenocarcinomas.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03238-7

By:

Ng, Alvin Wei Tian;
Contino, Gianmarco;
Killcoyne, Sarah;
Devonshire, Ginny;
Hsu, Ray;
Abbas, Sujath;
Su, Jing;
Redmond, Aisling M.;
Weaver, Jamie M. J.;
Eldridge, Matthew D.;
Tavaré, Simon;
Oesophageal Cancer Clinical and Molecular Stratification (OCCAMS) Consortium;
Grehan, Nicola;
Nutzinger, Barbara;
Fidziukiewicz, Elwira;
Freeman, Adam;
Smyth, Elizabeth C.;
O'Donovan, Maria;
Miremadi, Ahmad;
Malhotra, Shalini

Publication type:

Article

Water bodies are potential hub for spatio-allotment of cell-free nucleic acid and pandemic: a pentadecadal (1969–2021) critical review on particulate cell-free DNA reservoirs in water nexus.

Published in:

Bulletin of the National Research Centre, 2022, v. 46, n. 1, p. 1, doi. 10.1186/s42269-022-00750-y

By:

Igere, Bright Esegbuyota;
Onohuean, Hope;
Nwodo, Uchechukwu U.

Publication type:

Article

Composition and Structure of Arabidopsis thaliana Extrachromosomal Circular DNAs Revealed by Nanopore Sequencing.

Published in:

Plants (2223-7747), 2023, v. 12, n. 11, p. 2178, doi. 10.3390/plants12112178

By:

Merkulov, Pavel;
Egorova, Ekaterina;
Kirov, Ilya

Publication type:

Article

Conserved, Mg2+-Dependent Exonuclease Degrades Organelle DNA during Arabidopsis Pollen Development.

Published in:

Plant Cell, 2011, v. 23, n. 4, p. 1608, doi. 10.1105/tpc.111.084012

By:

Matsushima, Ryo;
Tang, Lay Yin;
Zhang, Lingang;
Yamada, Hiroshi;
Twell, David;
Sakamoto, Wataru

Publication type:

Article

Using Genome-Wide SNP Discovery and Genotyping to Reveal the Main Source of Population Differentiation in Nothofagus dombeyi (Mirb.) Oerst. in Chile.

Published in:

International Journal of Genomics, 2016, p. 1, doi. 10.1155/2016/3654093

By:

Hasbún, Rodrigo;
González, Jorge;
Iturra, Carolina;
Fuentes, Glenda;
Alarcón, Diego;
Ruiz, Eduardo

Publication type:

Article

Beyond the Chromosome: Recent Developments in Decoding the Significance of Extrachromosomal Circular DNA (eccDNA) in Human Malignancies.

Published in:

Life (2075-1729), 2024, v. 14, n. 8, p. 922, doi. 10.3390/life14080922

By:

Tsiakanikas, Panagiotis;
Athanasopoulou, Konstantina;
Darioti, Ioanna A.;
Agiassoti, Vasiliki Taxiarchoula;
Theocharis, Stamatis;
Scorilas, Andreas;
Adamopoulos, Panagiotis G.

Publication type:

Article

ecc_finder: A Robust and Accurate Tool for Detecting Extrachromosomal Circular DNA From Sequencing Data.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.743742

By:

Zhang, Panpan;
Peng, Haoran;
Llauro, Christel;
Bucher, Etienne;
Mirouze, Marie

Publication type:

Article

Editorial: Mobile Elements and Plant Genome Evolution, Comparative Analyzes and Computational Tools.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.735134

By:

Kalendar, Ruslan;
Sabot, Francois;
Rodriguez, Fernando;
Karlov, Gennady I.;
Natali, Lucia;
Alix, Karine

Publication type:

Article

SCREENING OF B CHROMOSOMES FOR PRESENCE OF TWO GENES IN YELLOW-NECKED MICE, Apodemus flavicollis (Mammalia, Rodentia).

Published in:

Genetika (0534-0012), 2015, v. 47, n. 1, p. 311, doi. 10.2298/GENSR1501311R

By:

RAJIČIĆ, Marija;
ADNAĐEVIĆ, Tanja;
STAMENKOVIĆ, Gorana;
BLAGOJEVIĆ, Jelena;
VUJOŠEVIĆ, Mladen

Publication type:

Article

Protein phosphorylation in chloroplasts - a survey of phosphorylation targets.

Published in:

Journal of Experimental Botany, 2016, v. 67, n. 13, p. 3873, doi. 10.1093/jxb/erw098

By:

Baginsky, Sacha

Publication type:

Article

Chloroplasts at work during plant innate immunity.

Published in:

Journal of Experimental Botany, 2016, v. 67, n. 13, p. 3845, doi. 10.1093/jxb/erw088

By:

Serrano, Irene;
Audran, Corinne;
Rivas, Susana

Publication type:

Article

Dissecting stimulus-specific Ca2+ signals in amyloplasts and chloroplasts of Arabidopsis thaliana cell suspension cultures.

Published in:

Journal of Experimental Botany, 2016, v. 67, n. 13, p. 3965, doi. 10.1093/jxb/erw038

By:

Sello, Simone;
Perotto, Jennifer;
Carraretto, Luca;
Szabò, Ildikò;
Vothknecht, Ute C.;
Navazio, Lorella

Publication type:

Article

Reduced mitochondrial malate dehydrogenase activity has a strong effect on photorespiratory metabolism as revealed by 13C labelling.

Published in:

Journal of Experimental Botany, 2016, v. 67, n. 10, p. 3123, doi. 10.1093/jxb/erw030

By:

Lindén, Pernilla;
Keech, Olivier;
Stenlund, Hans;
Gardeström, Per;
Moritz, Thomas

Publication type:

Article

Protein import into plant mitochondria: signals, machinery, processing, and regulation.

Published in:

Journal of Experimental Botany, 2014, v. 65, n. 22, p. 6301, doi. 10.1093/jxb/eru399

By:

Murcha, Monika W.;
Kmiec, Beata;
Kubiszewski-Jakubiak, Szymon;
Teixeira, Pedro F.;
Glaser, Elzbieta;
Whelan, James

Publication type:

Article

Detecting variable (V), diversity (D) and joining (J) gene segment recombination using a two-colour fluorescence system.

Published in:

Mobile DNA, 2010, v. 1, n. 1, p. 1, doi. 10.1186/1759-8753-1-9

By:

Scott, Gina B.;
de Wynter, Erika A.;
Cook, Graham P.

Publication type:

Article

Extrachromosomal Circular DNA: An Emerging Potential Biomarker for Inflammatory Bowel Diseases?

Published in:

Genes, 2024, v. 15, n. 4, p. 414, doi. 10.3390/genes15040414

By:

Petito, Valentina;
Di Vincenzo, Federica;
Putignani, Lorenza;
Abreu, Maria T.;
Regenberg, Birgitte;
Gasbarrini, Antonio;
Scaldaferri, Franco

Publication type:

Article

Sequence Characterization of Extra-Chromosomal Circular DNA Content in Multiple Blackgrass (Alopecurus myosuroides) Populations.

Published in:

Genes, 2023, v. 14, n. 10, p. 1905, doi. 10.3390/genes14101905

By:

Fu, Wangfang;
MacGregor, Dana R.;
Comont, David;
Saski, Christopher A.

Publication type:

Article

Dynamics of Amino Acid Metabolism, Gene Expression, and Circulomics in a Recombinant Chinese Hamster Ovary Cell Line Adapted to Moderate and High Levels of Extracellular Lactate.

Published in:

Genes, 2023, v. 14, n. 8, p. 1576, doi. 10.3390/genes14081576

By:

Chitwood, Dylan G.;
Uy, Lisa;
Fu, Wanfang;
Klaubert, Stephanie R.;
Harcum, Sarah W.;
Saski, Christopher A.

Publication type:

Article

Gene Amplification and the Extrachromosomal Circular DNA.

Published in:

Genes, 2021, v. 12, n. 10, p. 1533, doi. 10.3390/genes12101533

By:

Shimizu, Noriaki

Publication type:

Article

Disrupted-in-schizophrenia 1 (DISC1) and Syntaphilin collaborate to modulate axonal mitochondrial anchoring.

Published in:

Molecular Brain, 2016, v. 9, p. 1, doi. 10.1186/s13041-016-0250-2

By:

Park, Cana;
Seol-Ae Lee;
Ji-Ho Hong;
Yeongjun Suh;
Park, Sung Jin;
Bo Kyoung Suh;
Youngsik Woo;
Jinhyuk Choi;
Ji-Won Huh;
You-Me Kim;
Park, Sang Ki

Publication type:

Article

Temporal changes in the viromes of Swedish Varroa-resistant and Varroa-susceptible honeybee populations.

Published in:

PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0206938

By:

Thaduri, Srinivas;
Locke, Barbara;
Granberg, Fredrik;
de Miranda, Joachim R.

Publication type:

Article

Prof. Manuel Espinosa Padrón (1942–2024): A Superb Plasmid Biologist and a Gentle Colossus.

Published in:

Microbial Biotechnology, 2025, v. 18, n. 1, p. 1, doi. 10.1111/1751-7915.70086

By:

Venkova, Tatiana;
Chattoraj, Dhruba

Publication type:

Article

Morphine stimulates nitric oxide release in human mitochondria.

Published in:

Journal of Bioenergetics & Biomembranes, 2015, v. 47, n. 5, p. 409, doi. 10.1007/s10863-015-9626-8

By:

Stefano, George;
Mantione, Kirk;
Capellan, Lismary;
Casares, Federico;
Challenger, Sean;
Ramin, Rohina;
Samuel, Joshua;
Snyder, Christopher;
Kream, Richard

Publication type:

Article

Voltage dependent anion channels (VDACs): a brief introduction with a focus on the outer mitochondrial compartment’s roles together with hexokinase-2 in the “Warburg effect” in cancer.

Published in:

Journal of Bioenergetics & Biomembranes, 2008, v. 40, n. 3, p. 123, doi. 10.1007/s10863-008-9165-7

By:

Peter Pedersen

Publication type:

Article

Enhanced alternative oxidase and antioxidant enzymes under Cd2+ stress in Euglena.

Published in:

Journal of Bioenergetics & Biomembranes, 2008, v. 40, n. 3, p. 227, doi. 10.1007/s10863-007-9098-6

By:

Norma Castro-Guerrero;
José Rodríguez-Zavala;
Alvaro Marín-Hernández;
Sara Rodríguez-Enríquez;
Rafael Moreno-Sánchez

Publication type:

Article

Identification of plasmids from Brazilian Chromobacterium violaceum strains.

Published in:

Canadian Journal of Microbiology, 2022, v. 68, n. 1, p. 45, doi. 10.1139/cjm-2021-0197

By:

de Lima, Daniel Chaves;
Medeiros, Inácio Gomes;
de Cássia Silva-Portela, Rita;
da Silva Junior, Francisco Carlos;
Fassarela Agnez-Lima, Lucymara;
de Souza, Jorge Estefano Santana;
Batistuzzo de Medeiros, Silvia R.

Publication type:

Article

Plasmid persistence: costs, benefits, and the plasmid paradox.

Published in:

Canadian Journal of Microbiology, 2018, v. 64, n. 5, p. 293, doi. 10.1139/cjm-2017-0609

By:

Carroll, Amanda C.;
Wong, Alex

Publication type:

Article

Plasmid AZOBR_p1-borne fabG gene for putative 3-oxoacyl-[acyl-carrier protein] reductase is essential for proper assembly and work of the dual flagellar system in the alphaproteobacterium Azospirillum brasilense Sp245.

Published in:

Canadian Journal of Microbiology, 2018, v. 64, n. 2, p. 107, doi. 10.1139/cjm-2017-0561

By:

Filip'echeva, Yulia A.;
Shelud'ko, Andrei V.;
Prilipov, Alexei G.;
Burygin, Gennady L.;
Telesheva, Elizaveta M.;
Yevstigneyeva, Stella S.;
Chernyshova, Marina P.;
Petrova, Lilia P.;
Katsy, Elena I.

Publication type:

Article

DNA extraction from bovine faeces: current status and future trends.

Published in:

Journal of Applied Microbiology, 2010, v. 108, n. 5, p. 1485, doi. 10.1111/j.1365-2672.2009.04606.x

By:

Rapp, D.

Publication type:

Article

Growth studies of plasmid bearing and plasmid cured Yersinia enterocolitica GER O:3 in the presence of cefsulodin, irgasan and novobiocin at 25 and 37°C.

Published in:

Journal of Applied Microbiology, 2006, v. 100, n. 6, p. 1299, doi. 10.1111/j.1365-2672.2006.02861.x

By:

Logue, C. M.;
Sherwood, J. S.;
Doetkott, C.

Publication type:

Article

Very close relationship of the chloroplast genomes among Saccharum species.

Published in:

Theoretical & Applied Genetics, 2005, v. 110, n. 8, p. 1523, doi. 10.1007/s00122-005-1990-z

By:

Takahashi, S.;
Furukawa, T.;
Asano, T.;
Terajima, Y.;
Shimada, H.;
Sugimoto, A.;
Kadowaki, K.

Publication type:

Article

Chloroplast DNA inheritance and variation inLeucadendronspecies (Proteaceae) as revealed by PCR-RFLP.

Published in:

Theoretical & Applied Genetics, 2004, v. 109, n. 8, p. 1694, doi. 10.1007/s00122-004-1800-z

By:

Pharmawati, M.;
Yan, G.;
Sedgley, R.;
Finnegan, P.

Publication type:

Article

Chloroplast DNA study in wild populations and some cultivars of Prunus avium L.

Published in:

Theoretical & Applied Genetics, 2001, v. 103, n. 1, p. 112, doi. 10.1007/s001220000532

By:

Mohanty, A.;
Martín, J.P.;
Aguinagalde, I.

Publication type:

Article

Characterization of Antibody Responses to a Plasmodium falciparum Blood-Stage Antigen Induced by a DNA Prime/Protein Boost Immunization Protocol.

Published in:

Scandinavian Journal of Immunology, 1999, v. 49, n. 5, doi. 10.1046/j.1365-3083.1999.00543.x

By:

Haddad;
Liljeqvist;
StÅhl;
Hansson;
Perlmann;
Ahlborg;
Berzins

Publication type:

Article

Extrachromosomal DNA in Genome (in)Stability - Role of Telomeres.

Published in:

Croatica Chemica Acta, 2016, v. 89, n. 2, p. 175, doi. 10.5562/cca2841

By:

Nanić, Lucia;
Ravlić, Sanda;
Rubelj, Ivica

Publication type:

Article