Works matching DE "EUKARYOTIC genomes"

Results: 1114

Horizontal Transfer of Bacterial Operons into Eukaryote Genomes.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 4, p. 1, doi. 10.1093/gbe/evaf055

By:

Kogay, Roman;
Wolf, Yuri I;
Koonin, Eugene V

Publication type:

Article

The BEACH Domain Protein SPIRRIG Is Essential for Arabidopsis Salt Stress Tolerance and Functions as a Regulator of Transcript Stabilization and Localization.

Published in:

PLoS Biology, 2015, v. 13, n. 7, p. 1, doi. 10.1371/journal.pbio.1002188

By:

Steffens, Alexandra;
Bräutigam, Andrea;
Jakoby, Marc;
Hülskamp, Martin

Publication type:

Article

SITEX 2.0: Projections of protein functional sites on eukaryotic genes. Extension with orthologous genes.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 2, p. -1, doi. 10.1142/S021972001650044X

By:

Medvedeva, Irina V.;
Demenkov, Pavel S.;
Ivanisenko, Vladimir A.

Publication type:

Article

Flooding Duration Affects the Structure of Terrestrial and Aquatic Microbial Eukaryotic Communities.

Published in:

Microbial Ecology, 2018, v. 75, n. 4, p. 875, doi. 10.1007/s00248-017-1085-9

By:

Röhl, Oliver;
Graupner, Nadine;
Peršoh, Derek;
Kemler, Martin;
Mittelbach, Moritz;
Boenigk, Jens;
Begerow, Dominik

Publication type:

Article

Eukaryotic Community Shift in Response to Organic Loading Rate of an Aerobic Trickling Filter (Down-Flow Hanging Sponge Reactor) Treating Domestic Sewage.

Published in:

Microbial Ecology, 2017, v. 73, n. 4, p. 801, doi. 10.1007/s00248-016-0871-0

By:

Miyaoka, Yuma;
Hatamoto, Masashi;
Yamaguchi, Takashi;
Syutsubo, Kazuaki

Publication type:

Article

RUBI: rapid proteomic-scale prediction of lysine ubiquitination and factors influencing predictor performance.

Published in:

Amino Acids, 2014, v. 46, n. 4, p. 853, doi. 10.1007/s00726-013-1645-3

By:

Walsh, Ian;
Domenico, Tomás;
Tosatto, Silvio

Publication type:

Article

Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease.

Published in:

Nature Reviews Neuroscience, 2012, v. 13, n. 8, p. 528, doi. 10.1038/nrn3234

By:

Qureshi, Irfan A.;
Mehler, Mark F.

Publication type:

Article

Expression of Transposable Elements throughout the Fasciola hepatica Trematode Life Cycle.

Published in:

Non-Coding RNA, 2024, v. 10, n. 4, p. 39, doi. 10.3390/ncrna10040039

By:

Skalon, Elizaveta K.;
Panyushev, Nick V.;
Podgornaya, Olga I.;
Smolyaninova, Anastasia R.;
Solovyeva, Anna I.

Publication type:

Article

Plant Long Noncoding RNAs: New Players in the Field of Post-Transcriptional Regulations.

Published in:

Non-Coding RNA, 2021, v. 7, n. 1, p. 1, doi. 10.3390/ncrna7010012

By:

Fonouni-Farde, Camille;
Ariel, Federico;
Crespi, Martin

Publication type:

Article

A Pipeline NanoTRF as a New Tool for De Novo Satellite DNA Identification in the Raw Nanopore Sequencing Reads of Plant Genomes.

Published in:

Plants (2223-7747), 2022, v. 11, n. 16, p. 2103, doi. 10.3390/plants11162103

By:

Kirov, Ilya;
Kolganova, Elizaveta;
Dudnikov, Maxim;
Yurkevich, Olga Yu.;
Amosova, Alexandra V.;
Muravenko, Olga V.

Publication type:

Article

Detecting Genetic Mobility Using a Transposon-Based Marker System in Gamma-Ray Irradiated Soybean Mutants.

Published in:

Plants (2223-7747), 2021, v. 10, n. 2, p. 373, doi. 10.3390/plants10020373

By:

Hung, Nguyen Ngoc;
Kim, Dong-Gun;
Lyu, Jae Il;
Park, Kyong-Cheul;
Kim, Jung Min;
Kim, Jin-Baek;
Ha, Bo-Keun;
Kwon, Soon-Jae;
Anai, Toyoaki

Publication type:

Article

Cytogenetic study in the Brazilian semiarid lizard Tropidurus hispidus (Squamata, Tropiduridae).

Published in:

Cuadernos de Herpetología, 2023, v. 37, n. 1, p. 57, doi. 10.31017/CdH.2023(2022-038

By:

da Silva, Marcelo João;
de Araújo Vieira, Ana Paula;
Galvão Cipriano, Flávia Manoela;
dos Santos Cândido, Maria Rita;
Gimenez Pinheiro, Tamaris;
Correa Oliveira, Edivaldo Herculano;
da Silva, Edson Lourenço

Publication type:

Article

Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-45884-x

By:

Torres, David E.;
Kramer, H. Martin;
Tracanna, Vittorio;
Fiorin, Gabriel L.;
Cook, David E.;
Seidl, Michael F.;
Thomma, Bart P. H. J.

Publication type:

Article

Origin of minicircular mitochondrial genomes in red algae.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39084-2

By:

Lee, Yongsung;
Cho, Chung Hyun;
Noh, Chanyoung;
Yang, Ji Hyun;
Park, Seung In;
Lee, Yu Min;
West, John A.;
Bhattacharya, Debashish;
Jo, Kyubong;
Yoon, Hwan Su

Publication type:

Article

A IMPORTÂNCIA DAS ÔMICAS COMO FERRAMENTAS PARA O ESTUDO DA PROSPECÇÃO DE MICRORGANISMOS: PERSPECTIVAS E DESAFIOS.

Published in:

UNINGÁ Review, 2014, v. 18, n. 2, p. 16

By:

DE LIZ SOUZA, LUCIANI;
AUGUSTO RHODEN, SANDRO;
ALENCAR PAMPHILE, JOÃO

Publication type:

Article

DIFFERENT GENOMIC SIGNAL PROCESSING METHODS FOR EUKARYOTIC GENE PREDICTION: A SYSTEMATIC REVIEW.

Published in:

Biomedical Engineering: Applications, Basis & Communications, 2017, v. 29, n. 1, p. -1, doi. 10.4015/S1016237217300012

By:

Mabrouk, Mai S.;
Naeem, Safaa M.;
Eldosoky, Mohamed A.

Publication type:

Article

A DSP-Based Approach for Gene Prediction in Eukaryotic Genes.

Published in:

International Journal on Electrical Engineering & Informatics, 2011, v. 3, n. 4, p. 480

By:

Shakya, D. K.;
Saxena, Rajiv;
Sharma, S. N.

Publication type:

Article

Core promoter-selective coregulators of transcription by RNA polymerase II.

Published in:

Transcription (2154-1264), 2012, v. 3, n. 6, p. 1, doi. 10.4161/trns.21846

By:

Martinez, Ernest

Publication type:

Article

Where and when to start: Regulating DNA replication origin activity in eukaryotic genomes.

Published in:

Nucleus (1949-1034), 2023, v. 14, n. 1, p. 1, doi. 10.1080/19491034.2023.2229642

By:

Lee, Clare S.K.;
Weiβ, Matthias;
Hamperl, Stephan

Publication type:

Article

Interstitial telomeric repeats-associated DNA breaks.

Published in:

Nucleus (1949-1034), 2017, v. 8, n. 6, p. 641, doi. 10.1080/19491034.2017.1356501

By:

Shubernetskaya, Olga;
Skvortsov, Dmitry;
Evfratov, Sergey;
Rubtsova, Maria;
Belova, Elena;
Strelkova, Olga;
Cherepaninets, Varvara;
Zhironkina, Oxana;
Olovnikov, Alexey;
Zvereva, Maria;
Dontsova, Olga;
Kireev, Igor

Publication type:

Article

The connection between BRG1, CTCF and topoisomerases at TAD boundaries.

Published in:

Nucleus (1949-1034), 2017, v. 8, n. 2, p. 150, doi. 10.1080/19491034.2016.1276145

By:

Barutcu, A. Rasim;
Lian, Jane B.;
Stein, Janet L.;
Stein, Gary S.;
Imbalzano, Anthony N.

Publication type:

Article

Functions of long noncoding RNAs in the nucleus.

Published in:

Nucleus (1949-1034), 2016, v. 7, n. 2, p. 155, doi. 10.1080/19491034.2016.1179408

By:

Yu, Bin;
Shan, Ge

Publication type:

Article

The International Nucleome Consortium.

Published in:

Nucleus (1949-1034), 2015, v. 6, n. 2, p. 89, doi. 10.1080/19491034.2015.1022703

By:

Tashiro, Satoshi;
Lanctôt, Christian

Publication type:

Article

Functional redundancy in the nuclear compartmentalization of the late-replicating genome.

Published in:

Nucleus (1949-1034), 2014, v. 5, n. 6, p. 626, doi. 10.4161/19491034.2014.990863

By:

Ragoczy, Tobias;
Telling, Agnes;
Scalzo, David;
Kooperberg, Charles;
Groudine, Mark

Publication type:

Article

Implications of polyadenylation in health and disease.

Published in:

Nucleus (1949-1034), 2014, v. 5, n. 6, p. 508, doi. 10.4161/nucl.36360

By:

Curinha, Ana;
Oliveira Braz, Sandra;
Pereira-Castro, Isabel;
Cruz, Andrea;
Moreira, Alexandra

Publication type:

Article

Histone variant selectivity at the transcription start site H2A.Z or H2A.Lap1.

Published in:

Nucleus (1949-1034), 2013, v. 4, n. 6, p. 1, doi. 10.4161/nucl.26862

By:

Nekrasov, Maxim;
Soboleva, Tatiana A;
Jack, Cameron;
Tremethick, David J

Publication type:

Article

Alternative genetic code for amino acids and transfer RNA revisited.

Published in:

Biomolecular Concepts, 2013, v. 4, n. 3, p. 309, doi. 10.1515/bmc-2013-0002

By:

Hamashima, Kiyofumi;
Kanai, Akio

Publication type:

Article

High-throughput single nucleotide polymorphism genotyping reveals population structure and genetic diversity of tall fescue (Festuca arundinacea) populations.

Published in:

Crop & Pasture Science, 2022, v. 73, n. 9, p. 1070, doi. 10.1071/CP21311

By:

Shahabzadeh, Zeynab;
Darvishzadeh, Reza;
Mohammadi, Reza;
Jafari, Morad;
Alipour, Hadi

Publication type:

Article

Replication stress response in fission yeast differentially depends on maintaining proper levels of Srs2 helicase and Rrp1, Rrp2 DNA translocases.

Published in:

PLoS ONE, 2024, v. 19, n. 6, p. 1, doi. 10.1371/journal.pone.0300434

By:

Baranowska, Gabriela;
Misiorna, Dorota;
Białek, Wojciech;
Kramarz, Karol;
Dziadkowiec, Dorota

Publication type:

Article

Extraction and selection of high-molecular-weight DNA for long-read sequencing from Chlamydomonas reinhardtii.

Published in:

PLoS ONE, 2024, v. 19, n. 2, p. 1, doi. 10.1371/journal.pone.0297014

By:

Chaux, Frédéric;
Agier, Nicolas;
Eberhard, Stephan;
Xu, Zhou

Publication type:

Article

Genomic object detection: An improved approach for transposable elements detection and classification using convolutional neural networks.

Published in:

PLoS ONE, 2023, v. 18, n. 9, p. 1, doi. 10.1371/journal.pone.0291925

By:

Orozco-Arias, Simon;
Lopez-Murillo, Luis Humberto;
Piña, Johan S.;
Valencia-Castrillon, Estiven;
Tabares-Soto, Reinel;
Castillo-Ossa, Luis;
Isaza, Gustavo;
Guyot, Romain

Publication type:

Article

Butterfly Genomics: Insights from the Genome of Melitaea cinxia.

Published in:

Annales Zoologici Fennici, 2017, v. 54, n. 1-4, p. 275, doi. 10.5735/086.054.0123

By:

Ahola, Virpi;
Wahlberg, Niklas;
Frilander, Mikko J.

Publication type:

Article

Silent clusters - speak up!

Published in:

Microbial Biotechnology, 2015, v. 8, n. 1, p. 13, doi. 10.1111/1751-7915.12181

By:

Gram, Lone

Publication type:

Article

Chromatin remodeling in Cancer: A Gateway to regulate gene Transcription

Published in:

Molecular Oncology, 2012, v. 6, n. 6, p. 611, doi. 10.1016/j.molonc.2012.09.005

By:

Nair, Sujit S.;
Kumar, Rakesh

Publication type:

Article

Trans2express – de novo transcriptome assembly pipeline optimized for gene expression analysis.

Published in:

Plant Methods, 2024, v. 20, p. 1, doi. 10.1186/s13007-024-01255-7

By:

Kasianova, Aleksandra M.;
Penin, Aleksey A.;
Schelkunov, Mikhail I.;
Kasianov, Artem S.;
Logacheva, Maria D.;
Klepikova, Anna V.

Publication type:

Article

Protection of the genome and the central exome by peripheral non‐coding DNA against DNA damage in health, ageing and age‐related diseases.

Published in:

Biological Reviews, 2025, v. 100, n. 2, p. 508, doi. 10.1111/brv.13151

By:

Qiu, Guo‐Hua;
Fu, Mingjun;
Zheng, Xintian;
Huang, Cuiqin

Publication type:

Article

Regulatory processes that maintain or alter ribosomal DNA stability during the repair of programmed DNA double-strand breaks.

Published in:

Genes & Genetic Systems, 2023, v. 98, n. 3, p. 103, doi. 10.1266/ggs.22-00046

By:

Mariko Sasaki;
Takehiko Kobayashi

Publication type:

Article

Mechanisms and impacts of genomic changes that are mediated by repetitive sequences in eukaryotes.

Published in:

Genes & Genetic Systems, 2023, v. 98, n. 3, p. 101, doi. 10.1266/ggs.98.101

By:

Mariko Sasaki

Publication type:

Article

Evolution of transposable elements and evolution of eukaryote genomes mediated by transposable elements.

Published in:

Genes & Genetic Systems, 2019, v. 94, n. 6, p. 231, doi. 10.1266/ggs.94.231

By:

Hidenori Nishihara

Publication type:

Article

Interactions among eukaryotes, retrotransposons and riboviruses: endogenous riboviral elements in eukaryotic genomes.

Published in:

Genes & Genetic Systems, 2019, v. 94, n. 6, p. 253, doi. 10.1266/ggs.18-00049

By:

Masayuki Horie

Publication type:

Article

Structural and sequence diversity of eukaryotic transposable elements.

Published in:

Genes & Genetic Systems, 2019, v. 94, n. 6, p. 233, doi. 10.1266/ggs.18-00024

By:

Kojima, Kenji K.

Publication type:

Article

Retroelements: molecular features andimplications for disease.

Published in:

Genes & Genetic Systems, 2013, v. 88, n. 1, p. 31, doi. 10.1266/ggs.88.31

By:

Yi-Deun Jung;
Kung Ahn;
Yun-Ji Kim;
Jin-Han Bae;
Ja-Rang Lee;
Heui-Soo Kim

Publication type:

Article

Transposable elements in eukaryotic genomes:epigenetic regulation by the host andfunctionalization for the host.

Published in:

Genes & Genetic Systems, 2013, v. 88, n. 1, p. 1, doi. 10.1266/ggs.88.1

By:

Ichiyanagi, Kenji

Publication type:

Article

High mobility group protein-mediated transcription requires DNA damage marker γ-H2AX.

Published in:

Cell Research, 2015, v. 25, n. 7, p. 837, doi. 10.1038/cr.2015.67

By:

Singh, Indrabahadur;
Ozturk, Nihan;
Cordero, Julio;
Mehta, Aditi;
Hasan, Diya;
Cosentino, Claudia;
Sebastian, Carlos;
Krüger, Marcus;
Looso, Mario;
Carraro, Gianni;
Bellusci, Saverio;
Seeger, Werner;
Braun, Thomas;
Mostoslavsky, Raul;
Barreto, Guillermo

Publication type:

Article

Comparative analysis of transposable elements provides insights into genome evolution in the genus Camelus.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08117-9

By:

Ibrahim, Mohanad A.;
Al-Shomrani, Badr M.;
Simenc, Mathew;
Alharbi, Sultan N.;
Alqahtani, Fahad H.;
Al-Fageeh, Mohamed B.;
Manee, Manee M.

Publication type:

Article

Complete genomes of the eukaryotic poultry parasite Histomonas meleagridis: linking sequence analysis with virulence / attenuation.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08059-2

By:

Palmieri, Nicola;
de Jesus Ramires, Marcelo;
Hess, Michael;
Bilic, Ivana

Publication type:

Article

Complete genomes of the eukaryotic poultry parasite Histomonas meleagridis: linking sequence analysis with virulence / attenuation.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08059-2

By:

Palmieri, Nicola;
de Jesus Ramires, Marcelo;
Hess, Michael;
Bilic, Ivana

Publication type:

Article

Dynamic enhancer transcription associates with reprogramming of immune genes during pattern triggered immunity in Arabidopsis.

Published in:

BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01362-8

By:

Zhang, Ying;
Tang, Meng;
Huang, Mengling;
Xie, Jiatao;
Cheng, Jiasen;
Fu, Yanping;
Jiang, Daohong;
Yu, Xiao;
Li, Bo

Publication type:

Article

RepAHR: an improved approach for de novo repeat identification by assembly of the high-frequency reads.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03779-w

By:

Liao, Xingyu;
Gao, Xin;
Zhang, Xiankai;
Wu, Fang-Xiang;
Wang, Jianxin

Publication type:

Article

Amino acid sequence associated with bacteriophage recombination site helps to reveal genes potentially acquired through horizontal gene transfer.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-03599-y

By:

Daugavet, Maria A.;
Shabelnikov, Sergey V.;
Podgornaya, Olga I.

Publication type:

Article