Works matching DE "EUKARYOTIC cells"

Results: 5000

Effectidor II: a pan-genomic AI-based algorithm for the prediction of type III secretion system effectors Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 5, p. 1, doi. 10.1093/bioinformatics/btaf272

By:

Wagner, Naama;
Baumer, Ella;
Lyubman, Iris;
Shimony, Yair;
Bracha, Noam;
Martins, Leonor;
Potnis, Neha;
Chang, Jeff H;
Teper, Doron;
Koebnik, Ralf;
Pupko, Tal

Publication type:

Article

Identification of mitophagy-related biomarkers in severe acute pancreatitis: integration of WGCNA, machine learning algorithms and scRNA-seq.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1594085

By:

Xie, Xiaozhou;
Wang, Zheng;
Zhang, Haoyu;
Lu, Jiongdi;
Cao, Feng;
Li, Fei

Publication type:

Article

TBEV NS1 Induces Tissue-Specific Microvascular Endothelial Cell Permeability by Activating the TNF-α Signaling Pathway.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 11, p. 5311, doi. 10.3390/ijms26115311

By:

Khlusevich, Yana;
Kravchuk, Bogdana;
Kechin, Andrey;
Stepanova, Alena;
Emelyanova, Lyudmila;
Khachatryan, Sargis;
Tikunova, Nina;
Matveev, Andrey

Publication type:

Article

Lavandula pedunculata subsp. atlantica : A Multifunctional Essential Oil for Potentially Combating Microbial Infections and Inflammatory Processes.

Published in:

Molecules, 2025, v. 30, n. 11, p. 2267, doi. 10.3390/molecules30112267

By:

Castagliuolo, Giusy;
Badalamenti, Natale;
Ilardi, Vincenzo;
Fontana, Gianfranco;
Antonini, Dario;
Varcamonti, Mario;
Bruno, Maurizio;
Zanfardino, Anna

Publication type:

Article

Intron Retention, an Orchestrated Program of Gene Expression Regulation.

Published in:

BioEssays, 2025, v. 47, n. 4, p. 1, doi. 10.1002/bies.202400248

By:

Zhou, Hua;
Deng, Xing Wang

Publication type:

Article

Plant NETWORKED and VAP27 Proteins Work in Complexes to Regulate Membrane-Based Functions.

Published in:

Contact (25152564), 2025, p. 1, doi. 10.1177/25152564251342533

By:

Duckney, Patrick J.;
Wang, Pengwei;
Hussey, Patrick J.

Publication type:

Article

Type IV secretion system effector sabotages multiple defense systems in a competing bacterium.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae121

By:

Wang, Bingxin;
Xu, Fugui;
Zhang, Zeyu;
Shen, Danyu;
Wang, Limin;
Wu, Huijun;
Yan, Qing;
Cui, Chuanbin;
Wang, Pingping;
Wei, Qi;
Shao, Xiaolong;
Wang, Mengcen;
Qian, Guoliang

Publication type:

Article

Microbial eukaryotic predation pressure and biomass at deep-sea hydrothermal vents.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae004

By:

Hu, Sarah K;
Anderson, Rika E;
Pachiadaki, Maria G;
Edgcomb, Virginia P;
Serres, Margrethe H;
Sylva, Sean P;
German, Christopher R;
Seewald, Jeffrey S;
Lang, Susan Q;
Huber, Julie A

Publication type:

Article

Structure of a prokaryotic fumarate transporter reveals the architecture of the SLC26 family.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 10, p. 803, doi. 10.1038/nsmb.3091

By:

Geertsma, Eric R;
Chang, Yung-Ning;
Shaik, Farooque R;
Neldner, Yvonne;
Pardon, Els;
Steyaert, Jan;
Dutzler, Raimund

Publication type:

Article

Reversible aggregation after heat shock.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 10, p. 758, doi. 10.1038/nsmb.3109

By:

Woolcock, Katrina

Publication type:

Article

The yin and yang of eIF3.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 5, p. 361, doi. 10.1038/nsmb.3026

By:

Ghosh, Shubhendu

Publication type:

Article

A little less leads to lots more.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 5, p. 350, doi. 10.1038/nsmb.3023

By:

Warner, Jonathan R

Publication type:

Article

Structural basis for interaction of a cotranslational chaperone with the eukaryotic ribosome.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 12, p. 1042, doi. 10.1038/nsmb.2908

By:

Zhang, Yixiao;
Ma, Chengying;
Yuan, Yi;
Zhu, Jing;
Li, Ningning;
Chen, Chu;
Wu, Shan;
Yu, Li;
Lei, Jianlin;
Gao, Ning

Publication type:

Article

Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 8, p. 721, doi. 10.1038/nsmb.2859

By:

Yamamoto, Hiroshi;
Unbehaun, Anett;
Loerke, Justus;
Behrmann, Elmar;
Collier, Marianne;
Bürger, Jörg;
Mielke, Thorsten;
Spahn, Christian M T

Publication type:

Article

Structure-guided simulations illuminate the mechanism of ATP transport through VDAC1.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 7, p. 626, doi. 10.1038/nsmb.2841

By:

Choudhary, Om P;
Paz, Aviv;
Adelman, Joshua L;
Colletier, Jacques-Philippe;
Abramson, Jeff;
Grabe, Michael

Publication type:

Article

Visualization of distinct substrate-recruitment pathways in the yeast exosome by EM.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 95, doi. 10.1038/nsmb.2736

By:

Liu, Jun-Jie;
Bratkowski, Matthew A;
Liu, Xueqi;
Niu, Chu-Ya;
Ke, Ailong;
Wang, Hong-Wei

Publication type:

Article

Look Ma, no PCNA: how DNA polymerase ε synthesizes long stretches of DNA without a processivity factor.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 12, doi. 10.1038/nsmb.2749

By:

Zahn, Karl E;
Doublié, Sylvie

Publication type:

Article

Establishment of methylation patterns in ES cells.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 110, doi. 10.1038/nsmb.2734

By:

Sabag, Ofra;
Zamir, Ayelet;
Keshet, Ilana;
Hecht, Merav;
Ludwig, Guy;
Tabib, Amalia;
Moss, Joshua;
Cedar, Howard

Publication type:

Article

Prereplication-complex formation: a molecular double take?

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 20, doi. 10.1038/nsmb.2738

By:

Yardimci, Hasan;
Walter, Johannes C

Publication type:

Article

A bacterial toxin catalyzing tyrosine glycosylation of Rho and deamidation of G<sub>q</sub> and G<sub>i</sub> proteins.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 11, p. 1273, doi. 10.1038/nsmb.2688

By:

Jank, Thomas;
Bogdanović, Xenia;
Wirth, Christophe;
Haaf, Erik;
Spoerner, Michael;
Böhmer, Kira E;
Steinemann, Marcus;
Orth, Joachim H C;
Kalbitzer, Hans Robert;
Warscheid, Bettina;
Hunte, Carola;
Aktories, Klaus

Publication type:

Article

Scratching the (lateral) surface of chromatin regulation by histone modifications.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 6, p. 657, doi. 10.1038/nsmb.2581

By:

Tropberger, Philipp;
Schneider, Robert

Publication type:

Article

Nonsense-mediated mRNA decay occurs during eIF4F-dependent translation in human cells.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 6, p. 702, doi. 10.1038/nsmb.2575

By:

Durand, Sébastien;
Lykke-Andersen, Jens

Publication type:

Article

eIF4E-bound mRNPs are substrates for nonsense-mediated mRNA decay in mammalian cells.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 6, p. 710, doi. 10.1038/nsmb.2576

By:

Rufener, Simone C;
Mühlemann, Oliver

Publication type:

Article

Making sense of nonsense.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 6, p. 651, doi. 10.1038/nsmb.2601

By:

Hentze, Matthias W;
Izaurralde, Elisa

Publication type:

Article

Detecting endogenous SUMO targets in mammalian cells and tissues.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 4, p. 525, doi. 10.1038/nsmb.2526

By:

Becker, Janina;
Barysch, Sina V;
Karaca, Samir;
Dittner, Claudia;
Hsiao, He-Hsuan;
Diaz, Mauricio Berriel;
Herzig, Stephan;
Urlaub, Henning;
Melchior, Frauke

Publication type:

Article

Structural characterization of a eukaryotic chaperone-the ribosome-associated complex.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 1, p. 23, doi. 10.1038/nsmb.2447

By:

Leidig, Christoph;
Bange, Gert;
Kopp, Jürgen;
Amlacher, Stefan;
Aravind, Ajay;
Wickles, Stephan;
Witte, Gregor;
Hurt, Ed;
Beckmann, Roland;
Sinning, Irmgard

Publication type:

Article

Structure of the human ATG12~ATG5 conjugate required for LC3 lipidation in autophagy.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 1, p. 59, doi. 10.1038/nsmb.2431

By:

Otomo, Chinatsu;
Metlagel, Zoltan;
Takaesu, Giichi;
Otomo, Takanori

Publication type:

Article

Multilayered chromatin analysis reveals E2f, Smad and Zfx as transcriptional regulators of histones.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 1, p. 119, doi. 10.1038/nsmb.2448

By:

Gokhman, David;
Livyatan, Ilana;
Sailaja, Badi Sri;
Melcer, Shai;
Meshorer, Eran

Publication type:

Article

Structure of the vacuolar-type ATPase from Saccharomyces cerevisiae at 11-Å resolution.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 12, p. 1356, doi. 10.1038/nsmb.2422

By:

Benlekbir, Samir;
Bueler, Stephanie A;
Rubinstein, John L

Publication type:

Article

Cryo-EM structures of Arx1 and maturation factors Rei1 and Jjj1 bound to the 60S ribosomal subunit.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 12, p. 1228, doi. 10.1038/nsmb.2425

By:

Greber, Basil J;
Boehringer, Daniel;
Montellese, Christian;
Ban, Nenad

Publication type:

Article

A biphasic pulling force acts on transmembrane helices during translocon-mediated membrane integration.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 10, p. 1018, doi. 10.1038/nsmb.2376

By:

Ismail, Nurzian;
Hedman, Rickard;
Schiller, Nina;
von Heijne, Gunnar

Publication type:

Article

PICking apart Pol II initiation.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 8, p. 737, doi. 10.1038/nsmb.2349

By:

Carey, Michael

Publication type:

Article

Structural basis for the activity of a cytoplasmic RNA terminal uridylyl transferase.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 8, p. 782, doi. 10.1038/nsmb.2329

By:

Yates, Luke A;
Fleurdépine, Sophie;
Rissland, Olivia S;
De Colibus, Luigi;
Harlos, Karl;
Norbury, Chris J;
Gilbert, Robert J C

Publication type:

Article

One core, two shells: bacterial and eukaryotic ribosomes.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 6, p. 560, doi. 10.1038/nsmb.2313

By:

Melnikov, Sergey;
Ben-Shem, Adam;
Garreau de Loubresse, Nicolas;
Jenner, Lasse;
Yusupova, Gulnara;
Yusupov, Marat

Publication type:

Article

The cryo-EM structure of the UPF-EJC complex shows UPF1 poised toward the RNA 3? end.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 5, p. 498, doi. 10.1038/nsmb.2287

By:

Melero, Roberto;
Buchwald, Gretel;
Castaño, Raquel;
Raabe, Monika;
Gil, David;
Lázaro, Melisa;
Urlaub, Henning;
Conti, Elena;
Llorca, Oscar

Publication type:

Article

A team effort blocks the ribosome in its tracks.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 2, p. 133, doi. 10.1038/nsmb.2236

By:

Pasquinelli, Amy E

Publication type:

Article

An ankyrin-repeat ubiquitin-binding domain determines TRABID's specificity for atypical ubiquitin chains.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 1, p. 62, doi. 10.1038/nsmb.2169

By:

Licchesi, Julien D F;
Mieszczanek, Juliusz;
Mevissen, Tycho E T;
Rutherford, Trevor J;
Akutsu, Masato;
Virdee, Satpal;
Oualid, Farid El;
Chin, Jason W;
Ovaa, Huib;
Bienz, Mariann;
Komander, David

Publication type:

Article

Fluorescent fusion protein knockout mediated by anti-GFP nanobody.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 1, p. 117, doi. 10.1038/nsmb.2180

By:

Caussinus, Emmanuel;
Kanca, Oguz;
Affolter, Markus

Publication type:

Article

Structural analysis of the interaction between Hsp90 and the tumor suppressor protein p53.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 10, p. 1086, doi. 10.1038/nsmb.2114

By:

Hagn, Franz;
Lagleder, Stephan;
Retzlaff, Marco;
Rohrberg, Julia;
Demmer, Oliver;
Richter, Klaus;
Buchner, Johannes;
Kessler, Horst

Publication type:

Article

Spliceosome assembly is coupled to RNA polymerase II dynamics at the 3? end of human genes.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 10, p. 1115, doi. 10.1038/nsmb.2124

By:

Martins, Sandra Bento;
Rino, José;
Carvalho, Teresa;
Carvalho, Célia;
Yoshida, Minoru;
Klose, Jasmim Mona;
de Almeida, Sérgio Fernandes;
Carmo-Fonseca, Maria

Publication type:

Article

Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 9, p. 1075, doi. 10.1038/nsmb.2091

By:

Valen, Eivind;
Preker, Pascal;
Andersen, Peter Refsing;
Xiaobei Zhao;
Yun Chen;
Ender, Christine;
Dueck, Anne;
Meister, Gunter;
Sandelin, Albin;
Jensen, Torben Heick

Publication type:

Article

Mechanism of actin filament nucleation by Vibrio VopL and implications for tandem W domain nucleation.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 9, p. 1060, doi. 10.1038/nsmb.2109

By:

Namgoong, Suk;
Boczkowska, Malgorzata;
Glista, Michael J.;
Winkelman, Jonathan D.;
Rebowski, Grzegorz;
Kovar, David R.;
Dominguez, Roberto

Publication type:

Article

Mechanism of actin filament nucleation by the bacterial effector VopL.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 9, p. 1068, doi. 10.1038/nsmb.2110

By:

Bingke Yu;
Hui-Chun Cheng;
Brautigam, Chad A.;
Tomchick, Diana R.;
Rosen, Michael K.

Publication type:

Article

Crystal structure of ?-tubulin complex protein GCP4 provides insight into microtubule nucleation.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 8, p. 915, doi. 10.1038/nsmb.2083

By:

Guillet, Valérie;
Knibiehler, Martine;
Gregory-Pauron, Lynn;
Remy, Marie-Hélène;
Chemin, Cécile;
Raynaud-Messina, Brigitte;
Bon, Cécile;
Kollman, Justin M.;
Agard, David A.;
Merdes, Andreas;
Mourey, Lionel

Publication type:

Article

Structure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 6, p. 715, doi. 10.1038/nsmb.2057

By:

Becker, Thomas;
Armache, Jean-Paul;
Jarasch, Alexander;
Anger, Andreas M.;
Villa, Elizabeth;
Sieber, Heidemarie;
Motaal, Basma Abdel;
Mielke, Thorsten;
Berninghausen, Otto;
Beckmann, Roland

Publication type:

Article

A conserved 20S proteasome assembly factor requires a C-terminal HbYX motif for proteasomal precursor binding.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 5, p. 622, doi. 10.1038/nsmb.2027

By:

Kusmierczyk, Andrew R.;
Kunjappu, Mary J.;
Kim, Roger Y.;
Hochstrasser, Mark

Publication type:

Article

Structure and VP16 binding of the Mediator Med25 activator interaction domain.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 4, p. 404, doi. 10.1038/nsmb.1997

By:

Vojnic, Erika;
Mourão, André;
Seizl, Martin;
Simon, Bernd;
Wenzeck, Larissa;
Larivière, Laurent;
Baumli, Sonja;
Baumgart, Karen;
Meisterernst, Michael;
Sattler, Michael;
Cramer, Patrick

Publication type:

Article

The structural basis for MCM2-7 helicase activation by GINS and Cdc45.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 4, p. 471, doi. 10.1038/nsmb.2004

By:

Costa, Alessandro;
Ilves, Ivar;
Tamberg, Nele;
Petojevic, Tatjana;
Nogales, Eva;
Botchan, Michael R.;
Berger, James M.

Publication type:

Article

Defining an allosteric circuit in the cysteine protease domain of Clostridium difficile toxins.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 3, p. 364, doi. 10.1038/nsmb.1990

By:

Shen, Aimee;
Lupardus, Patrick J.;
Gersch, Malte M.;
Puri, Aaron W.;
Albrow, Victoria E.;
Garcia, K Christopher;
Bogyo, Matthew

Publication type:

Article

Dissection of Dom34-Hbs1 reveals independent functions in two RNA quality control pathways.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 12, p. 1446, doi. 10.1038/nsmb.1963

By:

van den Elzen, Antonia M G;
Henri, Julien;
Lazar, Noureddine;
Gas, María Eugenia;
Durand, Dominique;
Lacroute, François;
Nicaise, Magali;
van Tilbeurgh, Herman;
Séraphin, Bertrand;
Graille, Marc

Publication type:

Article