Works matching DE "EUKARYOTE phylogeny"

Results: 78

The origins and evolutionary history of human non-coding RNA regulatory networks.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 2, p. -1, doi. 10.1142/S0219720017500056

By:

Sherafatian, Masih;
Mowla, Seyed Javad

Publication type:

Article

An 18S rRNA Workflow for Characterizing Protists in Sewage, with a Focus on Zoonotic Trichomonads.

Published in:

Microbial Ecology, 2017, v. 74, n. 4, p. 923, doi. 10.1007/s00248-017-0996-9

By:

Maritz, Julia;
Rock, Tara;
Joseph, Susan;
Carlton, Jane;
Rogers, Krysta;
Liu, Nicole;
Land, Kirkwood

Publication type:

Article

Unspliced XBP1 controls autophagy through FoxO1.

Published in:

Cell Research, 2013, v. 23, n. 4, p. 463, doi. 10.1038/cr.2013.9

By:

Vidal, Rene L;
Hetz, Claudio

Publication type:

Article

RNA silencing suppression by plant pathogens: defence, counter-defence and counter-counter-defence.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 11, p. 745, doi. 10.1038/nrmicro3120

By:

Pumplin, Nathan;
Voinnet, Olivier

Publication type:

Article

Quest for Ancestors of Eukaryal Cells Based on Phylogenetic Analyses of Aminoacyl-tRNA Synthetases.

Published in:

Journal of Molecular Evolution, 2017, v. 84, n. 1, p. 51, doi. 10.1007/s00239-016-9768-2

By:

Furukawa, Ryutaro;
Nakagawa, Mizuho;
Kuroyanagi, Takuya;
Yokobori, Shin-ichi;
Yamagishi, Akihiko

Publication type:

Article

Evolution of Eukaryotic DNA Polymerases via Interaction Between Cells and Large DNA Viruses.

Published in:

Journal of Molecular Evolution, 2015, v. 81, n. 1/2, p. 24, doi. 10.1007/s00239-015-9690-z

By:

Takemura, Masaharu;
Yokobori, Shin-ichi;
Ogata, Hiroyuki

Publication type:

Article

Analysis of Fox genes in Schmidtea mediterranea reveals new families and a conserved role of Smed-foxO in controlling cell death.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-80627-0

By:

Pascual-Carreras, Eudald;
Herrera-Úbeda, Carlos;
Rosselló, Maria;
Coronel-Córdoba, Pablo;
Garcia-Fernàndez, Jordi;
Saló, Emili;
Adell, Teresa

Publication type:

Article

Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02292-8

By:

Gordon, Sean P.;
Shengqiang Shu;
Schackwitz, Wendy;
Martin, Joel;
Lipzen, Anna;
Phillips, Jeremy;
Barry, Kerrie;
Davidson, Patrick;
Vogel, John P.;
Stritt, Christoph;
Roulin, Anne C.;
Tyler, Ludmila;
Caicedo, Ana L.;
Dochy, Niklas;
Geuten, Koen;
Budak, Hikmet;
Juengera, Thomas E.;
Mur, Luis A. J.;
Figueroa, Melania;
Contreras-Moreira, Bruno

Publication type:

Article

Phylogenomics Places Orphan Protistan Lineages in a Novel Eukaryotic Super-Group.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 2, p. 427, doi. 10.1093/gbe/evy014

By:

Brown, Matthew W.;
Heiss, Aaron A.;
Ryoma Kamikawa;
Yuji Inagaki;
Akinori Yabuki;
Tice, Alexander K.;
Takashi Shiratori;
Ken-Ichiro Ishida;
Tetsuo Hashimoto;
Simpson, Alastair G. B.;
Roger, Andrew J.

Publication type:

Article

Evolutionary Dynamics of hAT DNA Transposon Families in Saccharomycetaceae.

Published in:

Genome Biology & Evolution, 2014, v. 7, n. 1, p. 172, doi. 10.1093/gbe/evu273

By:

Sarilar, Véronique;
Bleykasten-Grosshans, Claudine;
Neuvéglise, Cécile

Publication type:

Article

The Mitochondrial Genomes of the Glaucophytes Gloeochaete wittrockiana and Cyanoptyche gloeocystis: Multilocus Phylogenetics Suggests a Monophyletic Archaeplastida.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 10, p. 2774, doi. 10.1093/gbe/evu218

By:

Jackson, Christopher J.;
Reyes-Prieto, Adrian

Publication type:

Article

A Broad Phylogenetic Survey Unveils the Diversity and Evolution of Telomeres in Eukaryotes.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 3, p. 468

By:

Fulnečková, Jana;
Ševčíková, Tereza;
Fajkus, Jiří;
Lukešová, Alena;
Lukeš, Martin;
Vlček, Čestmír;
Lang, B. Franz;
Kim, Eunsoo;
Eliáš, Marek;
Sýkorová, Eva

Publication type:

Article

Gene transfers from organelles to the nucleus: How much, what happens, and why none in Elysia?

Published in:

Endocytobiosis & Cell Research, 2012, v. 23, p. 16

By:

Martin, William;
Hazkani-Covo, Einat;
Shavit-Greivink, Liat;
Schmitt, Valerie;
Händeler, Katha-rina;
Gould, Sven B.;
Lan-dan, Giddy;
Graur, Dan;
Dagan, Tal

Publication type:

Article

Modern endosymbiotic theory: Getting lateral gene transfer into the equation.

Published in:

Endocytobiosis & Cell Research, 2012, v. 23, p. 1

By:

Martin, William;
Roettger, Mayo;
Kloesges, Thorsten;
Thiergart, Thorsten;
Woehle, Christian;
Gould, Sven;
Dagan, Tal

Publication type:

Article

Functionally conserved enhancers with divergent sequences in distant vertebrates.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2070-7

By:

Song Yang;
Oksenberg, Nir;
Takayama, Sachiko;
Seok-Jin Heo;
Poliakov, Alexander;
Ahituv, Nadav;
Dubchak, Inna;
Boffelli, Dario

Publication type:

Article

A comparative genomics study on the effect of individual amino acids on ribosome stalling.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S10-S5

By:

Sabi, Renana;
Tuller, Tamir

Publication type:

Article

Evaluation of the mechanisms of intron loss and gain in the social amoebae Dictyostelium.

Published in:

BMC Evolutionary Biology, 2015, v. 15, p. 1, doi. 10.1186/s12862-015-0567-y

By:

Ming-Yue Ma;
Xun-Ru Che;
Porceddu, Andrea;
Deng-Ke Niu

Publication type:

Article

Horizontal gene transfer in bdelloid rotifers is ancient, ongoing and more frequent in species from desiccating habitats.

Published in:

BMC Biology, 2015, v. 13, p. 1, doi. 10.1186/s12915-015-0202-9

By:

Eyres, Isobel;
Boschetti, Chiara;
Crisp, Alastair;
Smith, Thomas P.;
Fontaneto, Diego;
Tunnacliffe, Alan;
Barraclough, Timothy G.

Publication type:

Article

Archaeal ancestors of eukaryotes: not so elusive any more.

Published in:

BMC Biology, 2015, v. 13, n. 1, p. 1, doi. 10.1186/s12915-015-0194-5

By:

Koonin, Eugene V.

Publication type:

Article

Digest: Drivers of coral diversification in a major marine biodiversity hotspot.

Published in:

Evolution, 2018, v. 72, n. 2, p. 406, doi. 10.1111/evo.13419

By:

Pérez‐Escobar, Oscar Alejandro;
Cass, Susannah;
Dodsworth, Steven

Publication type:

Article

Monophyly of Archaeplastida supergroup and relationships among its lineages in the light of phylogenetic and phylogenomic studies. Are we close to a consensus?

Published in:

Acta Societatis Botanicorum Poloniae, 2014, v. 83, n. 4, p. 263, doi. 10.5586/asbp.2014.044

By:

Mackiewicz, Paweł;
Gagat, Przemysław

Publication type:

Article

A single loss of photosynthesis in the diatom order Bacillariales (Bacillariophyta).

Published in:

American Journal of Botany, 2019, v. 106, n. 4, p. 560, doi. 10.1002/ajb2.1267

By:

Onyshchenko, Anastasiia;
Ruck, Elizabeth C.;
Nakov, Teofil;
Alverson, Andrew J.

Publication type:

Article

IsoSel: Protein Isoform Selector for phylogenetic reconstructions.

Published in:

PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0174250

By:

Philippon, Héloïse;
Souvane, Alexia;
Brochier-Armanet, Céline;
Perrière, Guy

Publication type:

Article

Diversity and Evolutionary Analysis of Iron-Containing (Type-III) Alcohol Dehydrogenases in Eukaryotes.

Published in:

PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0166851

By:

Gaona-López, Carlos;
Julián-Sánchez, Adriana;
Riveros-Rosas, Héctor

Publication type:

Article

Debugging Eukaryotic Genetic Code Expansion for Site-Specific Click-PAINT Super-Resolution Microscopy.

Published in:

Angewandte Chemie International Edition, 2016, v. 55, n. 52, p. 16172, doi. 10.1002/anie.201608284

By:

Nikić, Ivana;
Estrada Girona, Gemma;
Kang, Jun Hee;
Paci, Giulia;
Mikhaleva, Sofya;
Koehler, Christine;
Shymanska, Nataliia V.;
Ventura Santos, Camilla;
Spitz, Daniel;
Lemke, Edward A.

Publication type:

Article

Phylogeny of metabolic networks: A spectral graph theoretical approach.

Published in:

Journal of Biosciences, 2015, v. 40, n. 4, p. 799, doi. 10.1007/s12038-015-9562-0

By:

Deyasi, Krishanu;
Banerjee, Anirban;
Deb, Bony

Publication type:

Article

PCR amplification of SNP loci from crude DNA for large-scale genotyping of oomycetes.

Published in:

Mycologia, 2014, v. 106, n. 3, p. 607, doi. 10.3852/13-218

By:

Jian Hu;
Lyon, Rebecca;
Yuxin Zhou;
Lamour, Kurt

Publication type:

Article

Phylogenetic diversity of eukaryotic marine microbial plankton on the Scotian Shelf Northwestern Atlantic Ocean.

Published in:

Journal of Plankton Research, 2014, v. 36, n. 2, p. 344, doi. 10.1093/plankt/fbt123

By:

Dasilva, Cindy R.;
Lovejoy, Connie;
Li, William K.W.

Publication type:

Article

A Brief History of Schizosaccharomyces pombe Research: A Perspective Over the Past 70 Years.

Published in:

Genetics, 2016, v. 203, n. 2, p. 621, doi. 10.1534/genetics.116.189407

By:

Fantes, Peter A.;
Hoffman, Charles S.

Publication type:

Article

MicroRNA-877 acts as a tumor suppressor by directly targeting eEF2K in renal cell carcinoma.

Published in:

Oncology Letters, 2016, v. 11, n. 2, p. 1474, doi. 10.3892/ol.2015.4072

By:

QIANQIAN SHI;
XIANLIN XU;
QING LIU;
FENGBAO LUO;
JIAN SHI;
XIAOZHOU HE

Publication type:

Article

Phylogenetic and ecological diversity of apusomonads, a lineage of deep-branching eukaryotes.

Published in:

Environmental Microbiology Reports, 2017, v. 9, n. 2, p. 113, doi. 10.1111/1758-2229.12507

By:

Torruella, Guifré;
Moreira, David;
López-García, Purificación

Publication type:

Article

Polyploidy Is Genetic Hence May Cause Non-Adaptive Radiations, Whereas Pseudopolyploidy Is Genomic Hence May Cause Adaptive Non-Radiations.

Published in:

Journal of Experimental Zoology Part B: Molecular & Developmental Evolution, 2013, v. 320, n. 5, p. 286, doi. 10.1002/jez.b.22499

By:

GORELICK, ROOT;
OLSON, KRYSTLE

Publication type:

Article

The quantum mitochondrion and optimal health.

Published in:

Biochemical Society Transactions, 2016, v. 44, n. 4, p. 1101, doi. 10.1042/BST20160096

By:

Nunn, Alistair V. W.;
Guy, Geoffrey W.;
Bell, Jimmy D.

Publication type:

Article

Eukaryotic molecular diversity at different steps of the wastewater treatment plant process reveals more phylogenetic novel lineages.

Published in:

World Journal of Microbiology & Biotechnology, 2017, v. 33, n. 3, p. 1, doi. 10.1007/s11274-017-2217-6

By:

Chouari, Rakia;
Leonard, Marie;
Bouali, Moez;
Guermazi, Sonda;
Rahli, Naima;
Zrafi, Ines;
Morin, Loïc;
Sghir, Abdelghani

Publication type:

Article

Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes.

Published in:

PLoS Genetics, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pgen.1006810

By:

Da Cunha, Violette;
Gaia, Morgan;
Gadelle, Daniele;
Nasir, Arshan;
Forterre, Patrick

Publication type:

Article

Analysis of orthologous groups reveals archease and DDX1 as tRNA splicing factors.

Published in:

Nature, 2014, v. 511, n. 7507, p. 104, doi. 10.1038/nature13284

By:

Popow, Johannes;
Jurkin, Jennifer;
Schleiffer, Alexander;
Martinez, Javier

Publication type:

Article

Impact of sequence processing and taxonomic classification approaches on eukaryotic community structure from environmental samples with emphasis on diatoms.

Published in:

Molecular Ecology Resources, 2018, v. 18, n. 2, p. 204, doi. 10.1111/1755-0998.12726

By:

Hardge, Kristin;
Neuhaus, Stefan;
Kilias, Estelle S.;
Wolf, Christian;
Metfies, Katja;
Frickenhaus, Stephan

Publication type:

Article

DNA metabarcoding reveals that 200- μm-size-fractionated filtering is unable to discriminate between planktonic microbial and large eukaryotes.

Published in:

Molecular Ecology Resources, 2017, v. 17, n. 5, p. 991, doi. 10.1111/1755-0998.12652

By:

Liu, Lemian;
Liu, Min;
Wilkinson, David M.;
Chen, Huihuang;
Yu, Xiaoqing;
Yang, Jun

Publication type:

Article

Analysis of the impact of the absence of RAD51 strand exchange activity in Arabidopsis meiosis.

Published in:

PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0183006

By:

Singh, Gunjita;
Da Ines, Olivier;
Gallego, Maria Eugenia;
White, Charles I.

Publication type:

Article

Taxon-Rich Phylogenomic Analyses Resolve the Eukaryotic Tree of Life and Reveal the Power of Subsampling by Sites.

Published in:

Systematic Biology, 2015, v. 64, n. 3, p. 406, doi. 10.1093/sysbio/syu126

By:

KATZ, LAURA A.;
GRANT, JESSICA R.

Publication type:

Article

Phylogenetics and the Human Microbiome.

Published in:

Systematic Biology, 2015, v. 64, n. 1, p. e26, doi. 10.1093/sysbio/syu053

By:

Matsen, Frederick A.

Publication type:

Article

Turning the Crown Upside Down: Gene Tree Parsimony Roots the Eukaryotic Tree of Life.

Published in:

Systematic Biology, 2012, v. 61, n. 4, p. 653, doi. 10.1093/sysbio/sys026

By:

Katz, Laura A.;
Grant, Jessica R.;
Parfrey, Laura Wegener;
Burleigh, J. Gordon

Publication type:

Article

Phylogenetic analysis, molecular modeling, substrate-inhibitor specificity, and active site comparison of bacterial, fungal, and plant heme peroxidases.

Published in:

Biotechnology & Applied Biochemistry, 2012, v. 59, n. 4, p. 283, doi. 10.1002/bab.1025

By:

Singh, Swati;
Pandey, Veda P.;
Naaz, Huma;
Dwivedi, Upendra N.

Publication type:

Article

Dinophyte chloroplasts and phylogeny - A review.

Published in:

Grana, 1999, v. 38, n. 2/3, p. 81, doi. 10.1080/00173139908559217

By:

Schnepf, Eberhard;
ElbräChter, Malte

Publication type:

Article

Opposite Polarity Monospore Genome De Novo Sequencing and Comparative Analysis Reveal the Possible Heterothallic Life Cycle of Morchella importuna.

Published in:

International Journal of Molecular Sciences, 2018, v. 19, n. 9, p. 2525, doi. 10.3390/ijms19092525

By:

Liu, Wei;
Chen, LianFu;
Cai, YingLi;
Zhang, QianQian;
Bian, YinBing

Publication type:

Article

Characteristic Variations and Similarities in Biochemical, Molecular, and Functional Properties of Glyoxalases across Prokaryotes and Eukaryotes.

Published in:

International Journal of Molecular Sciences, 2017, v. 18, n. 4, p. 250, doi. 10.3390/ijms18040250

By:

Kaur, Charanpreet;
Sharma, Shweta;
Hasan, Mohammad Rokebul;
Pareek, Ashwani;
Singla-Pareek, Sneh L.;
Sopory, Sudhir K.

Publication type:

Article

A practical implementation of large transcriptomic data analysis to resolve cryptic species diversity problems in microbial eukaryotes.

Published in:

BMC Evolutionary Biology, 2018, v. 18, n. 1, p. 1, doi. 10.1186/s12862-018-1283-1

By:

Tekle, Yonas I.;
Wood, Fiona C.

Publication type:

Article

Correction to: Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution.

Published in:

2018

By:

Orr, Russell J. S.;
Zhao, Sen;
Klaveness, Dag;
Yabuki, Akinori;
Ikeda, Keiji;
Watanabe, Makoto M.;
Shalchian-Tabrizi, Kamran

Publication type:

Correction Notice

In defence of the three-domains of life paradigm.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-1059-z

By:

van der Gulik, P. T. S.;
Hoff, W. D.;
Speijer, D.

Publication type:

Article

Carcass mass has little influence on the structure of gravesoil microbial communities.

Published in:

International Journal of Legal Medicine, 2016, v. 130, n. 1, p. 253, doi. 10.1007/s00414-015-1206-2

By:

Weiss, Sophie;
Carter, David;
Metcalf, Jessica;
Knight, Rob

Publication type:

Article