Works matching DE "EUCHROMATIN"

Results: 168

Nucleosome dynamics render heterochromatin accessible in living human cells.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-59994-7

By:

Prajapati, Hemant K.;
Xu, Zhuwei;
Eriksson, Peter R.;
Clark, David J.

Publication type:

Article

Propidium iodide for making heterochromatin more evident in the C-banding technique.

Published in:

Biotechnic & Histochemistry, 2012, v. 87, n. 7, p. 433, doi. 10.3109/10520295.2012.696700

By:

Lui, RL;
Blanco, DR;
Moreira-Filho, O;
Margarido, VP

Publication type:

Article

Chromatin Organization during C. elegans Early Development.

Published in:

DNA (2673-8856), 2024, v. 4, n. 1, p. 64, doi. 10.3390/dna4010004

By:

Jash, Eshna;
Csankovszki, Györgyi

Publication type:

Article

Structural basis for the preservation of a subset of topologically associating domains in interphase chromosomes upon cohesin depletion.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.88564

By:

Jeong, Davin;
Guang Shi;
Xin Li;
Thirumalai, D.

Publication type:

Article

Microhomology-mediated circular DNA formation from oligonucleosomal fragments during spermatogenesis.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.87115

By:

Jun Hu;
Zhe Zhang;
Sai Xiao;
Yalei Cao;
Yinghong Chen;
Jiaming Weng;
Hui Jiang;
Wei Li;
Jia-Yu;
Chao Liu

Publication type:

Article

Histone variants shape chromatin states in Arabidopsis.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.87714

By:

Jamge, Bhagyshree;
Lorković, Zdravko J.;
Axelsson, Elin;
Osakabe, Akihisa;
Shukla, Vikas;
Yelagandula, Ramesh;
Akimcheva, Svetlana;
Kuehn, Annika Luisa;
Berger, Frédéric

Publication type:

Article

The role of chromatin in Plasmodium gene expression.

Published in:

Cellular Microbiology, 2012, v. 14, n. 6, p. 819, doi. 10.1111/j.1462-5822.2012.01777.x

By:

Duffy, Michael F.;
Selvarajah, Shamista A.;
Josling, Gabrielle A.;
Petter, Michaela

Publication type:

Article

Aus Medizin‐ und Umweltwissenschaften.

Published in:

Nachrichten aus der Chemie, 2021, v. 69, n. 2, p. 53, doi. 10.1002/nadc.20214106079

By:

Leusmann, Eliza

Publication type:

Article

Physical constraints in polymer modeling of chromatin associations with the nuclear periphery at kilobase scale.

Published in:

Nucleus (1949-1034), 2021, v. 12, n. 1, p. 6, doi. 10.1080/19491034.2020.1868105

By:

Brunet, Annaël;
Destainville, Nicolas;
Collas, Philippe

Publication type:

Article

Functional redundancy in the nuclear compartmentalization of the late-replicating genome.

Published in:

Nucleus (1949-1034), 2014, v. 5, n. 6, p. 626, doi. 10.4161/19491034.2014.990863

By:

Ragoczy, Tobias;
Telling, Agnes;
Scalzo, David;
Kooperberg, Charles;
Groudine, Mark

Publication type:

Article

Euchromatin factors HULC and Set1C affect heterochromatin organization and mating-type switching in fission yeast Schizosaccharomyces pombe.

Published in:

Genes & Genetic Systems, 2022, v. 97, n. 3, p. 123, doi. 10.1266/ggs.22-00012

By:

Esquivel-Chávez, Alfredo;
Takahisa Maki;
Hideo Tsubouchi;
Testuya Handa;
Hiroshi Kimura;
Haber, James E.;
Thon, Geneviève;
Hiroshi Iwasaki

Publication type:

Article

Fub1p, a novel protein isolated by boundary screening, binds the proteasome complex.

Published in:

Genes & Genetic Systems, 2011, v. 86, n. 5, p. 305, doi. 10.1266/ggs.86.305

By:

Hatanaka, Akira;
Chen, Bo;
Sun, Jing.-Qian;
Mano, Yasunobu;
Funakoshi, Minoru;
Kobayashi, Hideki;
Ju, Yunfeng;
Mizutani, Tetsuya;
Shinmyozu, Kaori;
Nakayama, Jun.-Ichi;
Miyamoto, Kaoru;
Uchida, Hiroyuki;
Oki, Masaya

Publication type:

Article

Canonical cytosolic iron-sulfur cluster assembly and non-canonical functions of DRE2 in Arabidopsis.

Published in:

PLoS Genetics, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pgen.1008094

By:

Wang, Xiaokang;
Chen, Xudong;
Sun, Linhua;
Qian, Weiqiang

Publication type:

Article

Yeast heterochromatin regulators Sir2 and Sir3 act directly at euchromatic DNA replication origins.

Published in:

PLoS Genetics, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pgen.1007418

By:

Hoggard, Timothy A.;
Chang, FuJung;
Perry, Kelsey Rae;
Subramanian, Sandya;
Kenworthy, Jessica;
Chueng, Julie;
Shor, Erika;
Hyland, Edel M.;
Boeke, Jef D.;
Weinreich, Michael;
Fox, Catherine A.

Publication type:

Article

4Cin: A computational pipeline for 3D genome modeling and virtual Hi-C analyses from 4C data.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006030

By:

Irastorza-Azcarate, Ibai;
Acemel, Rafael D.;
Tena, Juan J.;
Maeso, Ignacio;
Gómez-Skarmeta, José Luis;
Devos, Damien P.

Publication type:

Article

Noncoding RNAs prevent spreading of a repressive histone mark.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 8, p. 994, doi. 10.1038/nsmb.2619

By:

Keller, Claudia;
Kulasegaran-Shylini, Raghavendran;
Shimada, Yukiko;
Hotz, Hans-Rudolf;
Bühler, Marc

Publication type:

Article

Chromosomal mapping of two Mariner-like elements in the grasshopper Abracris flavolineata (Orthoptera: Acrididae) reveals enrichment in euchromatin.

Published in:

European Journal of Entomology, 2014, v. 111, n. 3, p. 329, doi. 10.14411/eje.2014.052

By:

PALACIOS-GIMENEZ, OCTAVIO M.;
BUENO, DANILO;
CABRAL-DE-MELLO, DIOGO C.

Publication type:

Article

Adaptation of gene loci to heterochromatin in the course of Drosophila evolution is associated with insulator proteins.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-68879-2

By:

Funikov, Sergei Yu.;
Rezvykh, Alexander P.;
Kulikova, Dina A.;
Zelentsova, Elena S.;
Protsenko, Lyudmila A.;
Chuvakova, Lyubov N.;
Tyukmaeva, Venera I.;
Arkhipova, Irina R.;
Evgen'ev, Michael B.

Publication type:

Article

The Genome-Wide EMS Mutagenesis Bias Correlates With Sequence Context and Chromatin Structure in Rice.

Published in:

Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2021.579675

By:

Yan, Wei;
Deng, Xing Wang;
Yang, Chengwei;
Tang, Xiaoyan

Publication type:

Article

Studying the Intensity of Physiological and Genetic Processes in Plants Treated with Maleic Hydrazide.

Published in:

Albanian Journal of Agricultural Sciences, 2015, v. 14, n. 4, p. 338

By:

MAMMADOVA, AFET;
ALIYEV, RAMIZ;
BABAYEVA, SEVDA;
ABBASOV, MEHRAJ

Publication type:

Article

Differential DNA lesion formation and repair in heterochromatin and euchromatin.

Published in:

Carcinogenesis, 2016, v. 37, n. 2, p. 129, doi. 10.1093/carcin/bgv247

By:

Han, Chunhua;
Srivastava, Amit Kumar;
Tiantian Cui;
Qi-En Wang;
Wani, Altaf A.

Publication type:

Article

The Interchromatin Compartment Participates in the Structural and Functional Organization of the Cell Nucleus.

Published in:

BioEssays, 2020, v. 42, n. 2, p. N.PAG, doi. 10.1002/bies.201900132

By:

Cremer, Thomas;
Cremer, Marion;
Hübner, Barbara;
Silahtaroglu, Asli;
Hendzel, Michael;
Lanctôt, Christian;
Strickfaden, Hilmar;
Cremer, Christoph

Publication type:

Article

Integrated analysis reveals the alterations that LMNA interacts with euchromatin in LMNA mutation-associated dilated cardiomyopathy.

Published in:

Clinical Epigenetics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13148-020-00996-1

By:

Zhang, Xiaolin;
Shao, Xiuli;
Zhang, Ruijia;
Zhu, Rongli;
Feng, Rui

Publication type:

Article

High-Quality Genome Assemblies Reveal Evolutionary Dynamics of Repetitive DNA and Structural Rearrangements in the Drosophila virilis Subgroup.

Published in:

Genome Biology & Evolution, 2024, v. 16, n. 1, p. 1, doi. 10.1093/gbe/evad238

By:

Flynn, Jullien M;
Ahmed-Braimah, Yasir H;
Long, Manyuan;
Wing, Rod A;
Clark, Andrew G

Publication type:

Article

Impacts of Sex Ratio Meiotic Drive on Genome Structure and Function in a Stalk-Eyed Fly.

Published in:

Genome Biology & Evolution, 2023, v. 15, n. 7, p. 1, doi. 10.1093/gbe/evad118

By:

Reinhardt, Josephine A;
Baker, Richard H;
Zimin, Aleksey V;
Ladias, Chloe;
Paczolt, Kimberly A;
Werren, John H;
Hayashi, Cheryl Y;
Wilkinson, Gerald S

Publication type:

Article

CHH Methylation Islands: A Nonconserved Feature of Grass Genomes That Is Positively Associated with Transposable Elements but Negatively Associated with Gene-Body Methylation.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 8, p. 1, doi. 10.1093/gbe/evab144

By:

Martin, Galen T;
Seymour, Danelle K;
Gaut, Brandon S

Publication type:

Article

Evolutionary History of Alpha Satellite DNA Repeats Dispersed within Human Genome Euchromatin.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 11, p. 2125, doi. 10.1093/gbe/evaa224

By:

Feliciello, Isidoro;
Pezer, Željka;
Kordiš, Dušan;
Mađarić, Branka Bruvo;
Ugarković, Đurđica

Publication type:

Article

Homologues of potato chromosome 5 show variable collinearity in the euchromatin, but dramatic absence of sequence similarity in the pericentromeric heterochromatin.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1578-1

By:

de Boer, Jan M.;
Datema, Erwin;
Xiaomin Tang;
Borm, Theo J. A.;
Bakker, Erin H.;
van Eck, Herman J.;
van Ham, Roeland C. H. J.;
de Jong, Hans;
Visser, Richard G. F.;
Bachem, Christian W. B.

Publication type:

Article

Gene promoters show chromosome-specificity and reveal chromosome territories in humans.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-278

By:

Gagniuc, Paul;
Ionescu-Tirgoviste, Constantin

Publication type:

Article

Euchromatin islands in large heterochromatin domains are enriched for CTCF binding and differentially DNA-methylated regions.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 566, doi. 10.1186/1471-2164-13-566

By:

Wen, Bo;
Wu, Hao;
Loh, Yuin-Han;
Briem, Eirikur;
Daley, George Q.;
Feinberg, Andrew P.

Publication type:

Article

A genomic overview of short genetic variations in a basal chordate, Ciona intestinalis.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 208, doi. 10.1186/1471-2164-13-208

By:

Yutaka Satou;
Tadasu Shin-i;
Yuji Kohara;
Nori Satoh;
Shota Chiba

Publication type:

Article

The DEK oncoprotein binds to highly and ubiquitously expressed genes with a dual role in their transcriptional regulation.

Published in:

Molecular Cancer, 2014, v. 13, p. 1, doi. 10.1186/1476-4598-13-215

By:

Sandén, Carl;
Järvstråt, Linnea;
Lennartsson, Andreas;
Brattås, Per Ludvik;
Nilsson, Björn;
Gullberg, Urban

Publication type:

Article

Mitogen-activated protein kinases concentrate in the vicinity of chromosomes and may regulate directly cellular patterning in Vicia faba embryos.

Published in:

Planta: An International Journal of Plant Biology, 2018, v. 248, n. 2, p. 307, doi. 10.1007/s00425-018-2905-y

By:

Winnicki, Konrad;
Żabka, Aneta;
Polit, Justyna Teresa;
Maszewski, Janusz

Publication type:

Article

Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes.

Published in:

Nature, 2012, v. 483, n. 7387, p. 82, doi. 10.1038/nature10843

By:

Hughes, Jennifer F.;
Skaletsky, Helen;
Brown, Laura G.;
Pyntikova, Tatyana;
Graves, Tina;
Fulton, Robert S.;
Dugan, Shannon;
Ding, Yan;
Buhay, Christian J.;
Kremitzki, Colin;
Wang, Qiaoyan;
Shen, Hua;
Holder, Michael;
Villasana, Donna;
Nazareth, Lynne V.;
Cree, Andrew;
Courtney, Laura;
Veizer, Joelle;
Kotkiewicz, Holland;
Cho, Ting-Jan

Publication type:

Article

Generating novel plant genetic variation via genome editing to escape the breeding lottery.

Published in:

In Vitro Cellular & Developmental Biology Plant, 2021, v. 57, n. 4, p. 627, doi. 10.1007/s11627-021-10213-0

By:

Schleif, Nathaniel;
Kaeppler, Shawn M.;
Kaeppler, Heidi F.

Publication type:

Article

Structural basis of thymidine-rich DNA recognition by Drosophila P75 PWWP domain.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-07895-2

By:

Jin, Zhaohui;
Meng, Zhe;
Liu, Yanchao;
Li, Chongyang;
Zhang, Xuedi;
Yin, Yue;
Gao, Guanjun;
Dou, Kun;
Huang, Ying

Publication type:

Article

Chromatin: Defining heterochromatin.

Published in:

Nature Reviews Molecular Cell Biology, 2012, v. 13, n. 11, p. 684, doi. 10.1038/nrm3450

By:

Du Toit, Andrea

Publication type:

Article

Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes.

Published in:

Plant Cell, 2016, v. 28, n. 2, p. 314, doi. 10.1105/tpc.15.00911

By:

Springer, Nathan M.;
Lisch, Damon;
Li, Qing

Publication type:

Article

Accessible DNA and Relative Depletion of H3K9me2 at Maize Loci Undergoing RNA-Directed DNA Methylation.

Published in:

Plant Cell, 2014, v. 26, n. 12, p. 4903, doi. 10.1105/tpc.114.130427

By:

Gent, Jonathan I.;
Madzima, Thelma F.;
Bader, Rechien;
Kent, Matthew R.;
Zhang, Xiaoyu;
Stam, Maike;
McGinnis, Karen M.;
Dawe, R. Kelly

Publication type:

Article

Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States.

Published in:

Plant Cell, 2014, v. 26, n. 6, p. 2351, doi. 10.1105/tpc.114.124578

By:

Sequeira-Mendes, Joana;
Aragüez, Irene;
Peiró, Ramón;
Mendez-Giraldez, Raul;
Zhang, Xiaoyu;
Jacobsen, Steven E.;
Bastolla, Ugo;
Gutierrez, Crisanto

Publication type:

Article

Arabidopsis SET DOMAIN GROUP2 Is Required for H3K4 Trimethylation and Is Crucial for Both Sporophyte and Gametophyte Development.

Published in:

Plant Cell, 2010, v. 22, n. 10, p. 3232, doi. 10.1105/tpc.110.079962

By:

Berr, Alexandre;
McCallum, Emily J.;
Ménard, Rozenn;
Meyer, Denise;
Fuchs, Jörg;
Dong, Aiwu;
Shen, Wen-Hui

Publication type:

Article

Amelogenin Downregulates Interferon Gamma-Induced Major Histocompatibility Complex Class II Expression Through Suppression of Euchromatin Formation in the Class II Transactivator Promoter IV Region in Macrophages.

Published in:

Frontiers in Immunology, 2020, v. 11, p. 1, doi. 10.3389/fimmu.2020.00709

By:

Yotsumoto, Karen;
Sanui, Terukazu;
Tanaka, Urara;
Yamato, Hiroaki;
Alshargabi, Rehab;
Shinjo, Takanori;
Nakao, Yuki;
Watanabe, Yukari;
Hayashi, Chikako;
Taketomi, Takaharu;
Fukuda, Takao;
Nishimura, Fusanori

Publication type:

Article

Chromatin associations in Arabidopsis interphase nuclei.

Published in:

Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00389

By:

Schubert, Veit;
Rudnik, Radoslaw;
Schubert, Ingo

Publication type:

Article

Epigenetic modulation via the C-terminal tail of H2A.Z.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-53514-9

By:

Imre, László;
Nánási Jr, Péter;
Benhamza, Ibtissem;
Enyedi, Kata Nóra;
Mocsár, Gábor;
Bosire, Rosevalentine;
Hegedüs, Éva;
Niaki, Erfaneh Firouzi;
Csóti, Ágota;
Darula, Zsuzsanna;
Csősz, Éva;
Póliska, Szilárd;
Scholtz, Beáta;
Mező, Gábor;
Bacsó, Zsolt;
Timmers, H. T. Marc;
Kusakabe, Masayuki;
Balázs, Margit;
Vámosi, György;
Ausio, Juan

Publication type:

Article

Double-strand breaks in facultative heterochromatin require specific movements and chromatin changes for efficient repair.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-53313-2

By:

Wensveen, Marieke R.;
Dixit, Aditya A.;
van Schendel, Robin;
Kendek, Apfrida;
Lambooij, Jan-Paul;
Tijsterman, Marcel;
Colmenares, Serafin U.;
Janssen, Aniek

Publication type:

Article

Widespread chromatin context-dependencies of DNA double-strand break repair proteins.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49232-x

By:

Vergara, Xabier;
Manjón, Anna G.;
de Haas, Marcel;
Morris, Ben;
Schep, Ruben;
Leemans, Christ;
Friskes, Anoek;
Beijersbergen, Roderick L.;
Sanders, Mathijs A.;
Medema, René H.;
van Steensel, Bas

Publication type:

Article

Impact of lymphocyte culture media on the number of metaphases and chromosome band resolution.

Published in:

Advances in Hygiene & Experimental Medicine / Postepy Higieny i Medycyny Doswiadczalnej, 2016, v. 70, p. 1095, doi. 10.5604/17322693.1221785

By:

Chomik, Piotr;
Gryzinska, Magdalena;
Batkowska, Justyna;
Jezewska-Witkowska, Grazyna;
Kocki, Janusz

Publication type:

Article

A decade of understanding spatio-temporal regulation of DNA repair by the nuclear architecture<sup>1</sup>.

Published in:

Biochemistry & Cell Biology, 2016, v. 94, n. 5, p. 433, doi. 10.1139/bcb-2016-0085

By:

Saad, Hicham;
Cobb, Jennifer A.

Publication type:

Article

ABSTRACTS.

Published in:: 2016
Publication type:: Abstract

Comparative 3D genome architecture in vertebrates.

Published in:

BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01301-7

By:

Li, Diyan;
He, Mengnan;
Tang, Qianzi;
Tian, Shilin;
Zhang, Jiaman;
Li, Yan;
Wang, Danyang;
Jin, Long;
Ning, Chunyou;
Zhu, Wei;
Hu, Silu;
Long, Keren;
Ma, Jideng;
Liu, Jing;
Zhang, Zhihua;
Li, Mingzhou

Publication type:

Article