Works matching DE "EPISTASIS (Genetics)"

Results: 1306

An insulin-sensitive Drosophila insulin-like receptor mutant remodels methionine metabolism to extend lifespan.

Published in:

PLoS Genetics, 2025, v. 21, n. 6, p. 1, doi. 10.1371/journal.pgen.1011640

By:

Tatar, Marc;
Zheng, Wenjing;
Yadav, Shweta;
Yamamoto, Rochele;
Curtis-Joseph, Noelle;
Li, Shengxi;
Wang, Lin;
Parkhitko, Andrey A.

Publication type:

Article

The TRIP12 E3 ligase induces SWI/SNF component BRG1-β-catenin interaction to promote Wnt signaling.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60535-5

By:

Kassel, Sara;
Yuan, Kai;
Bunnag, Nawat;
Neitzel, Leif R.;
Lu, Wenhui;
Schwarzkopf, Anna;
Maines, Benjamin;
Loberg, Matthew A.;
Xu, George;
Adams, Amber;
McCray, Andrew D.;
Cho, Alex;
Rockouski, Mary;
Orton, Gemma;
Goldsmith, Lily;
Aronno, Md Mubtaseem Ahnaf;
Spencer, Zachary T.;
Khan, Omar M.;
Ye, Fei;
Williams, Charles

Publication type:

Article

Recombinant inbred line panels inform the genetic architecture and interactions of adaptive traits in Drosophila melanogasterOpen Access.

Published in:

G3: Genes | Genomes | Genetics, 2025, v. 15, n. 5, p. 1, doi. 10.1093/g3journal/jkaf051

By:

Ribeiro, Tiago da Silva;
Lollar, Matthew J;
Sprengelmeyer, Quentin D;
Huang, Yuheng;
Benson, Derek M;
Orr, Megan S;
Johnson, Zachary C;
Corbett-Detig, Russell B;
Pool, John E

Publication type:

Article

Evolutionary dynamics in the two-locus two-allele model with weak selection.

Published in:

Journal of Mathematical Biology, 2018, v. 76, n. 1/2, p. 151, doi. 10.1007/s00285-017-1140-7

By:

Pontz, Martin;
Hofbauer, Josef;
Bürger, Reinhard

Publication type:

Article

Bistability in two-locus models with selection, mutation, and recombination.

Published in:

Journal of Mathematical Biology, 2011, v. 62, n. 5, p. 763, doi. 10.1007/s00285-010-0352-x

By:

Su-Chan Park;
Krug, Joachim

Publication type:

Article

Multilocus selection in subdivided populations II. Maintenance of polymorphism under weak or strong migration.

Published in:

Journal of Mathematical Biology, 2009, v. 58, n. 6, p. 979, doi. 10.1007/s00285-008-0237-4

By:

Bürger, Reinhard

Publication type:

Article

Genetic architecture of yield and yield contributing traits in chickpea (Cicer arietinum L.).

Published in:

Discover Agriculture, 2024, p. 1, doi. 10.1007/s44279-024-00063-w

By:

Deb, A. C.;
Hasan, M. T.

Publication type:

Article

A fast and exhaustive method for heterogeneity and epistasis analysis based on multi-objective optimization.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2829, doi. 10.1093/bioinformatics/btx339

By:

Xiong Li

Publication type:

Article

CMDR based differential evolution identifies the epistatic interaction in genome-wide association studies.

Published in:

Bioinformatics, 2017, v. 33, n. 15, p. 2354, doi. 10.1093/bioinformatics/btx163

By:

Cheng-Hong Yang;
Li-Yeh Chuang;
Yu-Da Lin

Publication type:

Article

OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1198, doi. 10.1093/bioinformatics/btx077

By:

Diaz-Uriarte, Ramon

Publication type:

Article

SELAM: simulation of epistasis and local adaptation during admixture with mate choice.

Published in:

Bioinformatics, 2016, v. 32, n. 19, p. 3035, doi. 10.1093/bioinformatics/btw365

By:

Corbett-Detig, Russell;
Jones, Matt

Publication type:

Article

A unified model based multifactor dimensionality reduction framework for detecting gene--gene interactions.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i605, doi. 10.1093/bioinformatics/btw424

By:

Wenbao Yu;
Seungyeoun Lee;
Taesung Park

Publication type:

Article

JBASE: Joint Bayesian Analysis of Subphenotypes and Epistasis.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 203, doi. 10.1093/bioinformatics/btv504

By:

Colak, Recep;
TaeHyung Kim;
Kazan, Hilal;
Yoomi Oh;
Cruz, Miguel;
Valladares-Salgado, Adan;
Peralta, Jesus;
Escobedo, Jorge;
Parra, Esteban J.;
Kim, Philip M.;
Goldenberg, Anna

Publication type:

Article

eQTL epistasis: detecting epistatic effects and inferring hierarchical relationships of genes in biological pathways.

Published in:

Bioinformatics, 2015, v. 31, n. 5, p. 656, doi. 10.1093/bioinformatics/btu727

By:

Kang, Mingon;
Zhang, Chunling;
Chun, Hyung-Wook;
Ding, Chris;
Liu, Chunyu;
Gao, Jean

Publication type:

Article

MACOED: a multi-objective ant colony optimization algorithm for SNP epistasis detection in genome-wide association studies.

Published in:

Bioinformatics, 2015, v. 31, n. 5, p. 634, doi. 10.1093/bioinformatics/btu702

By:

Jing, Peng-Jie;
Shen, Hong-Bin

Publication type:

Article

Graph-regularized dual Lasso for robust eQTL mapping.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i139, doi. 10.1093/bioinformatics/btu293

By:

Cheng, Wei;
Zhang, Xiang;
Guo, Zhishan;
Shi, Yu;
Wang, Wei

Publication type:

Article

Gene network inference by probabilistic scoring of relationships from a factorized model of interactions.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i246, doi. 10.1093/bioinformatics/btu287

By:

Žitnik, Marinka;
Zupan, Blaž

Publication type:

Article

Corrigendum of ‘High throughput analysis of epistasis in genome-wide association studies with BiForce’.

Published in:

2013

By:

Gyenesei, Attila;
Semple, Colin A.M.;
Haley, Chris S.;
Wei, Wen-Hua

Publication type:

Erratum

Gene–gene interaction analysis for the survival phenotype based on the Cox model.

Published in:

Bioinformatics, 2012, v. 28, n. 18, p. i582, doi. 10.1093/bioinformatics/bts415

By:

Lee, Seungyeoun;
Kwon, Min-Seok;
Oh, Jung Mi;
Park, Taesung

Publication type:

Article

High-throughput analysis of epistasis in genome-wide association studies with BiForce.

Published in:

Bioinformatics, 2012, v. 28, n. 15, p. 1957, doi. 10.1093/bioinformatics/bts304

By:

Gyenesei, Attila;
Moody, Jonathan;
Semple, Colin A.M.;
Haley, Chris S.;
Wei, Wen-Hua

Publication type:

Article

Comments on ‘An empirical comparison of several recent epistatic interaction detection methods’.

Published in:

2012

By:

Wan, Xiang;
Yang, Can;
Yu, Weichuan

Publication type:

Letter

Detecting genome-wide epistases based on the clustering of relatively frequent items.

Published in:

Bioinformatics, 2012, v. 28, n. 1, p. 5, doi. 10.1093/bioinformatics/btr603

By:

Xie, Minzhu;
Li, Jing;
Jiang, Tao

Publication type:

Article

Response: an empirical comparison of several recent epistatic interaction detection methods.

Published in:

2012

By:

Wang, Yue;
Liu, Guimei;
Feng, Mengling;
Wong, Limsoon

Publication type:

Letter

An empirical comparison of several recent epistatic interaction detection methods.

Published in:

Bioinformatics, 2011, v. 27, n. 21, p. 2936, doi. 10.1093/bioinformatics/btr512

By:

Wang, Yue;
Liu, Guimei;
Feng, Mengling;
Wong, Limsoon

Publication type:

Article

Detecting epistatic effects in association studies at a genomic level based on an ensemble approach.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i222

By:

Li, Jing;
Horstman, Benjamin;
Chen, Yixuan

Publication type:

Article

Epistasis detection on quantitative phenotypes by exhaustive enumeration using GPUs.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. i214, doi. 10.1093/bioinformatics/btr218

By:

Kam-Thong, Tony;
Pütz, Benno;
Karbalai, Nazanin;
Müller−Myhsok, Bertram;
Borgwardt, Karsten

Publication type:

Article

EpiGPU: exhaustive pairwise epistasis scans parallelized on consumer level graphics cards.

Published in:

Bioinformatics, 2011, v. 27, n. 11, p. 1462, doi. 10.1093/bioinformatics/btr172

By:

Hemani, Gibran;
Theocharidis, Athanasios;
Wei, Wenhua;
Haley, Chris

Publication type:

Article

eCEO: an efficient Cloud Epistasis cOmputing model in genome-wide association study.

Published in:

Bioinformatics, 2011, v. 27, n. 8, p. 1045, doi. 10.1093/bioinformatics/btr091

By:

Wang, Zhengkui;
Wang, Yue;
Tan, Kian-Lee;
Wong, Limsoon;
Agrawal, Divyakant

Publication type:

Article

TEAM: efficient two-locus epistasis tests in human genome-wide association study.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i217, doi. 10.1093/bioinformatics/btq186

By:

Xiang Zhang;
Shunping Huang;
Fei Zou;
Wei Wang

Publication type:

Article

FastEpistasis: a high performance computing solution for quantitative trait epistasis.

Published in:

Bioinformatics, 2010, v. 26, n. 11, p. 1468, doi. 10.1093/bioinformatics/btq147

By:

Schüpbach, Thierry;
Xenarios, Ioannis;
Bergmann, Sven;
Kapur, Karen

Publication type:

Article

Multifactor dimensionality reduction for graphics processing units enables genome-wide testing of epistasis in sporadic ALS.

Published in:

Bioinformatics, 2010, v. 26, n. 5, p. 694, doi. 10.1093/bioinformatics/btq009

By:

Greene, Casey S.;
Sinnott-Armstrong, Nicholas A.;
Himmelstein, Daniel S.;
Park, Paul J.;
Moore, Jason H.;
Harris, Brent T.

Publication type:

Article

Predictive rule inference for epistatic interaction detection in genome-wide association studies.

Published in:

Bioinformatics, 2010, v. 26, n. 1, p. 30, doi. 10.1093/bioinformatics/btp622

By:

Xiang Wan;
Can Yang;
Qiang Yang;
Hong Xue;
Tang, Nelson L. S.;
Weichuan Yu

Publication type:

Article

Modeling sequence-sequence interactions for drug response.

Published in:

Bioinformatics, 2007, v. 23, n. 10, p. 1251, doi. 10.1093/bioinformatics/btm110

By:

Min Lin;
Hongying Li;
Wei Hou;
Julie A. Johnson;
Rongling Wu

Publication type:

Article

SNPassoc: an R package to perform whole genome association studies.

Published in:

Bioinformatics, 2007, v. 23, n. 5, p. 654, doi. 10.1093/bioinformatics/btm025

By:

Juan R. González;
Lluís Armengol;
Xavier Solé;
Elisabet Guinó;
Josep M. Mercader;
Xavier Estivill;
Víctor Moreno

Publication type:

Article

Epistasis and quantitative traits: using model organisms to study gene-gene interactions.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 1, p. 22, doi. 10.1038/nrg3627

By:

Mackay, Trudy F. C.

Publication type:

Article

GENE EFFECTS IMPLIED IN MANIFESTATION OF THE SOME QUANTITATIVE TRAITS AT THE TOMATO.

Published in:

Lucrari Stiintifice, Universitatea de Stiinte Agricole Si Medicina Veterinara Ion Ionescu de la Brad Iasi, Seria Horticultura, 2018, v. 61, n. 2, p. 43

By:

Galina, LUPAŞCU;
Nadejda, MIHNEA

Publication type:

Article

SimHOEPI: A resampling simulator for generating single nucleotide polymorphism data with a high‐order epistasis model.

Published in:

Quantitative Biology, 2024, v. 12, n. 2, p. 197, doi. 10.1002/qub2.42

By:

Li, Yahan;
Cai, Xinrui;
Shang, Junliang;
Zhang, Yuanyuan;
Liu, Jin‐Xing

Publication type:

Article

Nuclear-mitochondrial epistasis: a gene's eye view of genomic conflict.

Published in:

Ecology & Evolution (20457758), 2016, v. 6, n. 18, p. 6460, doi. 10.1002/ece3.2345

By:

Wade, Michael J.;
Drown, Devin M.

Publication type:

Article

The Enigmatic Etiology of Oculo-Auriculo-Vertebral Spectrum (OAVS): An Exploratory Gene Variant Interaction Approach in Candidate Genes.

Published in:

Life (2075-1729), 2022, v. 12, n. 11, p. 1723, doi. 10.3390/life12111723

By:

Estandia-Ortega, Bernardette;
Reyna-Fabián, Miriam Erandi;
Velázquez-Aragón, José Antonio;
González-del Angel, Ariadna;
Fernández-Hernández, Liliana;
Alcántara-Ortigoza, Miguel Angel

Publication type:

Article

Predicting epistasis: an experimental test of metabolic control theory with bacterial transcription and translation.

Published in:

Journal of Evolutionary Biology, 2010, v. 23, n. 3, p. 488, doi. 10.1111/j.1420-9101.2009.01888.x

By:

MacLEAN, R. C.

Publication type:

Article

Age-dependent mutational effects curtail the evolution of senescence by antagonistic pleiotropy.

Published in:

Journal of Evolutionary Biology, 2009, v. 22, n. 12, p. 2409, doi. 10.1111/j.1420-9101.2009.01849.x

By:

MOORAD, J. A.;
HALL, D. W.

Publication type:

Article

Intergenomic epistasis causes asynchronous hatch times in whitefish hybrids, but only when parental ecotypes differ.

Published in:

Journal of Evolutionary Biology, 2009, v. 22, n. 11, p. 2305, doi. 10.1111/j.1420-9101.2009.01846.x

By:

WOODS, P. J.;
MÜLLER, R.;
SEEHAUSEN, O.

Publication type:

Article

Epistasis and the evolutionary dynamics of measured genotypic values during simulated serial bottlenecks.

Published in:

Journal of Evolutionary Biology, 2009, v. 22, n. 8, p. 1658, doi. 10.1111/j.1420-9101.2009.01776.x

By:

JARVIS, J. P.;
CHEVERUD, J. M.

Publication type:

Article

Multiplicative interaction between the two major mechanisms of permethrin resistance, kdr and cytochrome P450-monooxygenase detoxification, in mosquitoes.

Published in:

Journal of Evolutionary Biology, 2009, v. 22, n. 2, p. 416, doi. 10.1111/j.1420-9101.2008.01661.x

By:

HARDSTONE, M. C.;
LEICHTER, C. A.;
SCOTT, J. G.

Publication type:

Article

QTL mapping of inbreeding-related cold sensitivity and conditional lethality in Drosophila melanogaster.

Published in:

Journal of Evolutionary Biology, 2008, v. 21, n. 5, p. 1236, doi. 10.1111/j.1420-9101.2008.01572.x

By:

Vermeulen, C. J.;
Bijlsma, R.;
Loeschcke, V.

Publication type:

Article

Thermal evolution of pre-adult life history traits, geometric size and shape, and developmental stability in Drosophila subobscura.

Published in:

Journal of Evolutionary Biology, 2006, v. 19, n. 6, p. 2006, doi. 10.1111/j.1420-9101.2006.01139.x

By:

Santos, M.;
Brites, D.;
Laayouni, H.

Publication type:

Article

Chromosomal basis of viability differences in Tigriopus californicus interpopulation hybrids.

Published in:

Journal of Evolutionary Biology, 2006, v. 19, n. 6, p. 2040, doi. 10.1111/j.1420-9101.2006.01145.x

By:

Harrison, J. S.;
Edmands, S.

Publication type:

Article

Variation in the intensity of inbreeding depression among successive life-cycle stages and generations in gynodioecious Silene vulgaris (Caryophyllaceae).

Published in:

Journal of Evolutionary Biology, 2006, v. 19, n. 6, p. 1995, doi. 10.1111/j.1420-9101.2006.01147.x

By:

Glaettli, M.;
Goudet, J.

Publication type:

Article

Genetics of host plant use and life history in the comma butterfly across Europe: varying modes of inheritance as a potential reproductive barrier.

Published in:

Journal of Evolutionary Biology, 2006, v. 19, n. 6, p. 1882, doi. 10.1111/j.1420-9101.2006.01174.x

By:

Nygren, G. H.;
Nylin, S.;
Stefanescu, C.

Publication type:

Article

A measure of the within-chromosome synergistic epistasis for Drosophila viability.

Published in:

Journal of Evolutionary Biology, 2005, v. 18, n. 4, p. 1130, doi. 10.1111/j.1420-9101.2005.00892.x

By:

Rosa, J. M.;
Camacho, S.;
GarcíA-Dorado, A.

Publication type:

Article