Works matching DE "DNA-protein interactions"

Results: 1125

The AP2/ERF transcription factor OfERF2 promotes flavonoid biosynthesis in Osmanthus fragrans.

Published in:

Tree Genetics & Genomes, 2025, v. 21, n. 4, p. 1, doi. 10.1007/s11295-025-01704-x

By:

Hai, Xiangzhan;
Liu, Gege;
Lu, Miaomiao;
Fan, Rong;
Li, Ke;
Guo, Bingao;
Zhang, Huijuan;
Shang, Fude;
Han, Yuanji

Publication type:

Article

Hash-binding: DNA-protein binding prediction using hashing-based embedding.

Published in:

Neural Computing & Applications, 2025, v. 37, n. 21, p. 16905, doi. 10.1007/s00521-025-11349-5

By:

Ali, Sarwan;
Ali, Tamkanat E.;
Patterson, Murray

Publication type:

Article

Interpretable protein-DNA interactions captured by structure-sequence optimization.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.105565

By:

Yafan Zhang;
Silvernail, Irene;
Zhuyang Lin;
Xingcheng Lin

Publication type:

Article

Revealing the multi-target destruction induced by proanthocyanidins against Acetobacter sp. at the molecular level.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1624564

By:

Ren, Er-Fang;
Feng, Xiaoqin;
Feng, Yuanxin;
Li, Kai;
Zeng, Xin-An;
Wen, Qing-Hui;
Cai, Jin-Lin;
Han, Zhong;
Chen, Shan;
Niu, Debao

Publication type:

Article

Investigation of the Coordination Chemistry, Biomolecular Interactions, and Cytotoxicity of Heterocyclic Carboxamide Manganese(II) Complexes.

Published in:

European Journal of Inorganic Chemistry, 2025, v. 28, n. 19, p. 1, doi. 10.1002/ejic.202500234

By:

Tsaulwayo, Nokwanda;
Moabelo, Koena L.;
Xulu, Bheki A.;
Meyer, Mervin;
Ojwach, Stephen O.

Publication type:

Article

Insights into the Silver Camphorimine Complexes Interactions with DNA Based on Cyclic Voltammetry and Docking Studies.

Published in:

Molecules, 2025, v. 30, n. 13, p. 2817, doi. 10.3390/molecules30132817

By:

Costa, Joana P.;
Justino, Gonçalo C.;
Marques, Fernanda;
Carvalho, M. Fernanda N. N.

Publication type:

Article

S-Nitrosylation of p53 in Melanoma Cells Under Nitrosative Stress.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 13, p. 6512, doi. 10.3390/ijms26136512

By:

Grigoruta, Mariana;
Li, Li;
Chen, Leyuan;
Meng, Fancui;
Rosenblatt, Kevin P.;
Li, Yiliang;
Grimm, Elizabeth A.;
Qin, Yong

Publication type:

Article

A Single-Strand Annealing Protein Clamps DNA to Detect and Secure Homology.

Published in:

PLoS Biology, 2015, v. 13, n. 8, p. 1, doi. 10.1371/journal.pbio.1002213

By:

Ander, Marcel;
Subramaniam, Sivaraman;
Fahmy, Karim;
Stewart, A. Francis;
Schäffer, Erik

Publication type:

Article

Destabilizing DNA during Rejoining Enhances Fidelity of Repair.

Published in:

PLoS Biology, 2015, v. 13, n. 8, p. 1, doi. 10.1371/journal.pbio.1002214

By:

Robinson, Richard

Publication type:

Article

Bayesian Modeling of the Yeast SH3 Domain Interactome Predicts Spatiotemporal Dynamics of Endocytosis Proteins.

Published in:

PLoS Biology, 2009, v. 7, n. 10, p. 1, doi. 10.1371/journal.pbio.1000218

By:

Tonikian, Raffi;
Xiaofeng Xin;
Toret, Christopher P.;
Gfeller, David;
Landgraf, Christiane;
Panni, Simona;
Paoluzi, Serena;
Castagnoli, Luisa;
Currell, Bridget;
Seshagiri, Somasekar;
Haiyuan Yu;
Winsor, Barbara;
Vidal, Marc;
Gerstein, Mark B.;
Bader, Gary D.;
Volkmer, Rudolf;
Cesareni, Gianni;
Drubin, David G.;
Kim, Philip M.;
Sidhu, Sachdev S.

Publication type:

Article

Different Quaternary Structures of Human RECQ1 Are Associated with Its Dual Enzymatic Activity.

Published in:

PLoS Biology, 2007, v. 5, n. 2, p. 157, doi. 10.1371/journal.pbio.0050020

By:

Muzzolini, Laura;
Beuron, Fabienne;
Patwardhan, Ardan;
Popuri, Venkateswarlu;
Sheng Cui;
Niccolini, Benedetta;
Rappas, Mathieu;
Freemont, Paul S.;
Vindigni, Alessandro

Publication type:

Article

The Crystal Structure of the SV40 T-Antigen Origin Binding Domain in Complex with DNA.

Published in:

PLoS Biology, 2007, v. 5, n. 2, p. 144, doi. 10.1371/journal.pbio.0050023

By:

Meinke, Gretchen;
Phelan, Paul;
Moine, Stephanie;
Bochkareva, Elena;
Bochkarev, Alexey;
Bullock, Peter A.;
Bohm, Andrew

Publication type:

Article

The Structural Basis for Promoter --35 Element Recognition by the Group IV σ Factors.

Published in:

PLoS Biology, 2006, v. 4, n. 9, p. 1491, doi. 10.1371/journal.pbio.0040269

By:

Lane, William J.;
Darst, Seth A.

Publication type:

Article

Polycombing Drosophila for Dynamic Developmental Footprints.

Published in:

PLoS Biology, 2006, v. 4, n. 6, p. e177, doi. 10.1371/journal.pbio.0040177

By:

Hill, Emma

Publication type:

Article

A Functional Analysis of the Spacer of V(D)J Recombination Signal Sequences.

Published in:

PLoS Biology, 2003, v. 1, n. 10, p. 1, doi. 10.1371/journal.pbio.0000001

By:

Lee, Alfred Ian;
Fugmann, Sebastian D;
Cowell, Lindsay G;
Ptaszek, Leon M;
Kelsoe, Garnett;
Schatz, David G

Publication type:

Article

A Functional Analysis of the Spacer of V(D)J Recombination Signal Sequences.

Published in:

PLoS Biology, 2003, v. 1, n. 1, p. 56, doi. 10.1371/journal.pbio.0000001

By:

Lee, Alfred Ian;
Fugmann, Sebastian D.;
Cowell, Lindsay G.;
Ptaszek, Leon M.;
Kelsoe, Garnett;
Schatz, David G.

Publication type:

Article

The ecdysone receptor (ScEcR-A) binds DNA puffs at the start of DNA amplification in Sciara coprophila.

Published in:

Chromosome Research, 2013, v. 21, n. 4, p. 345, doi. 10.1007/s10577-013-9360-1

By:

Liew, Gerald;
Foulk, Michael;
Gerbi, Susan

Publication type:

Article

FeS-Induced Radical Formation and Its Effect on Plasmid DNA.

Published in:

Aquatic Geochemistry, 2011, v. 17, n. 4/5, p. 545, doi. 10.1007/s10498-010-9116-x

By:

Rickard, D.;
Hatton, B.;
Murphy, D. M.;
Butler, I. B.;
Oldroyd, A.;
Hann, A.

Publication type:

Article

Characterization of Adducts Formed in the Reactions of Methylglyoxal and Malonaldehyde with Lysine and Histidine Derivatives.

Published in:

Helvetica Chimica Acta, 2015, v. 98, n. 6, p. 842, doi. 10.1002/hlca.201400345

By:

Pluskota-Karwatka, Donata;
Pawłowska, Agata

Publication type:

Article

Involvement of the NADH oxidase-encoding noxA gene in oxidative stress responses in Corynebacterium glutamicum.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 3, p. 1363, doi. 10.1007/s00253-014-6327-x

By:

Park, Jung;
Kim, Younhee;
Lee, Heung-Shick

Publication type:

Article

Fluorescence resonance energy transfer (FRET)-based biosensors: visualizing cellular dynamics and bioenergetics.

Published in:

Applied Microbiology & Biotechnology, 2012, v. 96, n. 4, p. 895, doi. 10.1007/s00253-012-4449-6

By:

Zadran, Sohila;
Standley, Steve;
Wong, Kaylee;
Otiniano, Erick;
Amighi, Arash;
Baudry, Michel

Publication type:

Article

A novel high-throughput B1H-ChIP method for efficiently validating and screening specific regulator-target promoter interactions.

Published in:

Applied Microbiology & Biotechnology, 2012, v. 93, n. 3, p. 1257, doi. 10.1007/s00253-011-3748-7

By:

Zeng, Jumei;
Li, Yuqing;
Zhang, Shuguang;
He, Zheng-Guo

Publication type:

Article

High-affinity binding site for a specific nuclear protein in the human IgM gene.

Published in:

Nature, 1985, p. 289, doi. 10.1038/314289a0

By:

Hennighausen, Lothar;
Siebenlist, Ulrich;
Danner, David;
Leder, Philip;
Rawlins, Dan;
Rosenfeld, Philip;
Kelly Jr, Thomas

Publication type:

Article

Taken with a grain of salt.

Published in:

Nature, 1985, p. 223, doi. 10.1038/314223a0

By:

Zakian, Virginia A.

Publication type:

Article

Comparison of Empirical Zn 2+ Models in Protein–DNA Complexes.

Published in:

Biophysica, 2023, v. 3, n. 1, p. 214, doi. 10.3390/biophysica3010014

By:

Volkenandt, Senta;
Imhof, Petra

Publication type:

Article

球孢白僵菌转录因子 BbMSN2 与其结合基序变体的结合特性分析.

Published in:

Mycosystema, 2022, v. 41, n. 11, p. 1858, doi. 10.13346/j.mycosystema.220077

By:

宋驰;
郭凌媛;
钱斌;
Nemat O. Keyhani;
冀宏

Publication type:

Article

Sumoylation of the Plant Clock Transcription Factor CCA1 Suppresses DNA Binding.

Published in:

Journal of Biological Rhythms, 2017, v. 32, n. 6, p. 570, doi. 10.1177/0748730417737695

By:

Hansen, Louise L.;
Imrie, Lisa;
Le Bihan, Thierry;
van den Burg, Harrold A.;
van Ooijen, Gerben

Publication type:

Article

Effects of feeding diets naturally contaminated with Fusarium mycotoxins on protein metabolism in late gestation and lactation of first-parity sows.

Published in:

Journal of Animal Science, 2010, v. 88, n. 3, p. 998, doi. 10.2527/jas.2008-1633

By:

Díaz-Llano, G.;
Smith, T. K.;
Boermans, H. J.;
Caballero-Cortes, C.;
Friendship, R.

Publication type:

Article

Co-immunization with DNA and protein mixture: A safe and efficacious immunotherapeutic strategy for Alzheimer's disease in PDAPP mice.

Published in:

Scientific Reports, 2015, p. 7771, doi. 10.1038/srep07771

By:

Shi, DanYang;
Liu, Si;
Yu, Yun-Zhou;
Wang, Hai-Chao;
Xu, Qing;
Sun, Zhi-Wei

Publication type:

Article

A deletion variant within the FGF5 gene in goats is associated with gene expression levels and cashmere growth.

Published in:

Animal Genetics, 2022, v. 53, n. 5, p. 657, doi. 10.1111/age.13239

By:

Li, Yefang;
Song, Shen;
Zhang, Zhengkai;
Liu, Xuexue;
Zhang, Yanli;
E, Guangxin;
Ma, Yuehui;
Jiang, Lin

Publication type:

Article

Navigating the transcriptional roadmap regulating plant secondary cell wall deposition.

Published in:

Frontiers in Plant Science, 2013, v. 4, p. 1, doi. 10.3389/fpls.2013.00325

By:

Hussey, Steven G.;
Mizrachi, Eshchar;
Creux, Nicky M.;
Myburg, Alexander A.

Publication type:

Article

The Role of Histone Lysine Methylation in the Response of Mammalian Cells to Ionizing Radiation.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.639602

By:

Di Nisio, Elena;
Lupo, Giuseppe;
Licursi, Valerio;
Negri, Rodolfo

Publication type:

Article

The Role of Histone Lysine Methylation in the Response of Mammalian Cells to Ionizing Radiation.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.639602

By:

Di Nisio, Elena;
Lupo, Giuseppe;
Licursi, Valerio;
Negri, Rodolfo

Publication type:

Article

Effects of DNA Methylation on TFs in Human Embryonic Stem Cells.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.639461

By:

Luo, Ximei;
Zhang, Tianjiao;
Zhai, Yixiao;
Wang, Fang;
Zhang, Shumei;
Wang, Guohua

Publication type:

Article

Integrating Peak Colocalization and Motif Enrichment Analysis for the Discovery of Genome-Wide Regulatory Modules and Transcription Factor Recruitment Rules.

Published in:

Frontiers in Genetics, 2020, p. 1, doi. 10.3389/fgene.2020.00072

By:

Ronzio, Mirko;
Zambelli, Federico;
Dolfini, Diletta;
Mantovani, Roberto;
Pavesi, Giulio

Publication type:

Article

Single‐molecule tethered particle motion to study protein‐DNA interaction.

Published in:

Journal of the Chinese Chemical Society, 2023, v. 70, n. 6, p. 1314, doi. 10.1002/jccs.202300051

By:

Fan, Hsiu‐Fang

Publication type:

Article

Evidence for the absence of mutations at GJB3, GJB4 and LOR in progressive symmetrical erythrokeratodermia.

Published in:

Clinical & Experimental Dermatology, 2011, v. 36, n. 4, p. 399, doi. 10.1111/j.1365-2230.2010.03974.x

By:

Wei, S.;
Zhou, Y.;
Zhang, T. D.;
Huang, Z. M.;
Zhang, X. B.;
Zhu, H. L.;
Liang, B. H.;
Lin, L.;
Deng, L.

Publication type:

Article

Improving prediction performance of general protein language model by domain-adaptive pretraining on DNA-binding protein.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52293-7

By:

Zeng, Wenwu;
Dou, Yutao;
Pan, Liangrui;
Xu, Liwen;
Peng, Shaoliang

Publication type:

Article

Improving prediction performance of general protein language model by domain-adaptive pretraining on DNA-binding protein.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52293-7

By:

Zeng, Wenwu;
Dou, Yutao;
Pan, Liangrui;
Xu, Liwen;
Peng, Shaoliang

Publication type:

Article

Integrating ChIP-seq with other functional genomics data.

Published in:

Briefings in Functional Genomics, 2018, v. 17, n. 2, p. 104, doi. 10.1093/bfgp/ely002

By:

Shan Jiang;
Mortazavi, Ali

Publication type:

Article

ChIP-ping the branches of the tree: functional genomics and the evolution of eukaryotic gene regulation.

Published in:

Briefings in Functional Genomics, 2018, v. 17, n. 2, p. 116, doi. 10.1093/bfgp/ely004

By:

Marinov, Georgi K.;
Kundaje, Anshul

Publication type:

Article

Insights from resolving protein--DNA interactions at near base-pair resolution.

Published in:

Briefings in Functional Genomics, 2018, v. 17, n. 2, p. 80, doi. 10.1093/bfgp/elx043

By:

Venters, Bryan J.

Publication type:

Article

Enzymatic methods for genome-wide profiling of protein binding sites.

Published in:

Briefings in Functional Genomics, 2018, v. 17, n. 2, p. 138, doi. 10.1093/bfgp/elx030

By:

Policastro, Robert A.;
Zentner, Gabriel E.

Publication type:

Article

Modeling protein-DNA binding via high-throughput in vitro technologies.

Published in:

Briefings in Functional Genomics, 2017, v. 16, n. 3, p. 171, doi. 10.1093/bfgp/elw030

By:

Orenstein, Yaron;
Shamir, Ron

Publication type:

Article

Structure-based modeling of protein: DNA specificity.

Published in:

Briefings in Functional Genomics, 2015, v. 14, n. 1, p. 39, doi. 10.1093/bfgp/elu044

By:

Joyce, Adam P.;
Zhang, Chi;
Bradley, Philip;
Havranek, James J.

Publication type:

Article

Genome-wide approaches to understanding behaviour in Drosophila melanogaster.

Published in:

Briefings in Functional Genomics, 2012, v. 11, n. 5, p. 395, doi. 10.1093/bfgp/els031

By:

Neville, Megan;
Goodwin, Stephen F.

Publication type:

Article

Viruses with U-DNA: New Avenues for Biotechnology.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 5, p. 875, doi. 10.3390/v13050875

By:

Nagy, Kinga K.;
Skurnik, Mikael;
Vértessy, Beáta G.;
Azeredo, Joana

Publication type:

Article

Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding.

Published in:

Epigenetics & Chromatin, 2018, v. 11, p. 1, doi. 10.1186/s13072-018-0174-4

By:

Rao, Satyanarayan;
Chiu, Tsu-Pei;
Kribelbauer, Judith F.;
Mann, Richard S.;
Bussemaker, Harmen J.;
Rohs, Remo

Publication type:

Article

BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates.

Published in:

Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13072-015-0028-2

By:

Ramachandran, Parameswaran;
Palidwor, Gareth A.;
Perkins, Theodore J.

Publication type:

Article

Correlations between DNA methylation levels and nucleosome enrichment in the human genome.

Published in:

2013

By:

Collings, Clayton K.;
Anderson, John N.

Publication type:

Conference Paper/Materials