Works about DNA-binding proteins

Results: 5000

Comparative analysis of DNA binding and abiotic stress tolerance of Dps All4145 and its homologs in Anabaena PCC 7120.

Published in:

Molecular Biology Reports, 2025, v. 52, n. 1, p. 1, doi. 10.1007/s11033-025-10590-4

By:

Singh, Shilpi;
Rai, Krishna Kumar;
Shankar, Alka;
Dubey, Santosh Kumar;
Raj, Alka;
Rai, Ruchi

Publication type:

Article

Heat-shock chaperone HSPB1 mitigates poly-glycine-induced neurodegeneration via restoration of autophagic flux.

Published in:

Autophagy, 2025, v. 21, n. 6, p. 1298, doi. 10.1080/15548627.2025.2466144

By:

Ding, Ning;
Song, Yijie;
Zhang, Yuhang;
Yu, Wei;
Li, Xinnan;
Li, Wei;
Li, Lei

Publication type:

Article

Effect of forkhead box protein P2-mediated activation of myosin light-chain kinase on the invasion and migration of endometrial cancer cells.

Published in:

CytoJournal, 2025, v. 22, p. 1, doi. 10.25259/Cytojournal_31_2025

By:

Chang, Suwen

Publication type:

Article

A fission yeast CENP-B homolog Abp1 prevents RNAi-mediated heterochromatin formation at ribosomal DNA repeats.

Published in:

Genetics, 2025, v. 230, n. 1, p. 1, doi. 10.1093/genetics/iyaf050

By:

Tsunemine, Satoru;
Mori, Miyuki;
Murakami, Yota

Publication type:

Article

Two different and robustly modeled DNA binding modes of Competence Protein ComP - systematic modeling with AlphaFold 3, RoseTTAFold2NA, Chai-1 and re-docking in HADDOCK.

Published in:

PLoS ONE, 2025, v. 20, n. 5, p. 1, doi. 10.1371/journal.pone.0315160

By:

Helsem, Stian Aleksander;
Alfsnes, Kristian;
Frye, Stephan A.;
Hesselberg Løvestad, Alexander;
Ambur, Ole Herman

Publication type:

Article

A Systems Approach To Brain Degeneration Part 3 - Mechanisms in Brain Degeneration.

Published in:

Nutritional Perspectives: Journal of the Council on Nutrition, 2021, v. 44, n. 1, p. 12

By:

Kobsar, Bradley

Publication type:

Article

Reducing Pain and Inflammation Naturally -- Part IV: Nutritional and Botanical Inhibition of NF-kappaB, the Major Intracellular Amplifier of the Inflammatory Cascade. A Practical Clinical Strategy Exemplifying Anti-Inflammatory Nutrigenomics.

Published in:

Nutritional Perspectives: Journal of the Council on Nutrition, 2005, v. 28, n. 3, p. 5

By:

Vasquez, Alex

Publication type:

Article

AIDS and non-AIDS diffuse large B-cell lymphomas express different antigen profiles.

Published in:

2006

By:

Madan, Rashna;
Gormley, Robert;
Dulau, Alina;
Dongsheng Xu;
Walsh, Daniel;
Ramesh, K. H.;
Cannizaro, Linda;
Tamas, Ecaterina F.;
Kumar, Pankaj;
Sparano, Joseph;
LeValley, Aaron;
Xiaonan Xue;
Bhattacharyya, Pritish K.;
Ioachim, Harry L.;
Ratech, Howard;
Xu, Dongsheng;
Xue, Xiaonan

Publication type:

journal article

Genetic analysis of sinonasal adenocarcinoma phenotypes: distinct alterations of histogenetic significance.

Published in:

2005

By:

Yom, Sue S.;
Rashid, Asif;
Rosenthal, David I.;
Elliott, Danielle D.;
Hanna, Ehab Y.;
Weber, Randal S.;
El-Naggar, Adel K.

Publication type:

journal article

Telomerase expression and proliferative activity suggest a stem cell role for thyroid solid cell nests.

Published in:

2004

By:

Preto, Ana;
Cameselle-Teijeiro, José;
Moldes-Boullosa, Julio;
Soares, Paula;
Cameselle-Teijeiro, Jorge F.;
Silva, Paula;
Reis-Filho, Jorge S.;
Reyes-Santías, Rosa M.;
Alfonsín-Barreiro, Natividad;
Forteza, Jerónimo;
Sobrinho-Simões, Manuel;
Cameselle-Teijeiro, José;
Reyes-Santías, Rosa M;
Alfonsín-Barreiro, Natividad;
Forteza, Jerónimo;
Sobrinho-Simões, Manuel

Publication type:

journal article

Altered expression and molecular abnormalities of cell-cycle-regulatory proteins in rhabdomyosarcoma.

Published in:

2004

By:

Takahashi, Yukiko;
Oda, Yoshinao;
Kawaguchi, Ken-ichi;
Tamiya, Sadafumi;
Yamamoto, Hidetaka;
Suita, Sachiyo;
Tsuneyoshi, Masazumi

Publication type:

journal article

Molecular characterization of uterine clear cell carcinoma.

Published in:

Modern Pathology, 2004, v. 17, n. 5, p. 530, doi. 10.1038/modpathol.3800057

By:

Hee-Jung An, Giuseppe;
Logani, Sanjay;
Isacson, Christina;
Ellenson, Lora H.

Publication type:

Article

Electrostatic Repulsion Governs TDP-43 C-terminal Domain Aggregation.

Published in:

2016

By:

Mompeán, Miguel;
Chakrabartty, Avijit;
Buratti, Emanuele;
Laurents, Douglas V.

Publication type:

Opinion

Structure of Type IIL Restriction-Modification Enzyme MmeI in Complex with DNA Has Implications for Engineering New Specificities.

Published in:

PLoS Biology, 2016, v. 14, n. 4, p. 1, doi. 10.1371/journal.pbio.1002442

By:

Callahan, Scott J.;
Luyten, Yvette A.;
Gupta, Yogesh K.;
Wilson, Geoffrey G.;
Roberts, Richard J.;
Morgan, Richard D.;
Aggarwal, Aneel K.

Publication type:

Article

ALS-Causing Mutations Significantly Perturb the Self-Assembly and Interaction with Nucleic Acid of the Intrinsically Disordered Prion-Like Domain of TDP-43.

Published in:

PLoS Biology, 2016, v. 14, n. 1, p. 1, doi. 10.1371/journal.pbio.1002338

By:

Lim, Liangzhong;
Wei, Yuanyuan;
Lu, Yimei;
Song, Jianxing

Publication type:

Article

Tuning up STAT1.

Published in:

PLoS Biology, 2015, v. 13, n. 7, p. 1, doi. 10.1371/journal.pbio.1002201

By:

Sedwick, Caitlin

Publication type:

Article

A FRET-Based DNA Biosensor Tracks OmpR-Dependent Acidification of Salmonella during Macrophage Infection.

Published in:

PLoS Biology, 2015, v. 13, n. 4, p. 1, doi. 10.1371/journal.pbio.1002116

By:

Chakraborty, Smarajit;
Mizusaki, Hideaki;
Kenney, Linda J.

Publication type:

Article

A Trihelix DNA Binding Protein Counterbalances Hypoxia-Responsive Transcriptional Activation in Arabidopsis.

Published in:

PLoS Biology, 2014, v. 12, n. 9, p. 1, doi. 10.1371/journal.pbio.1001950

By:

Giuntoli, Beatrice;
Lee, Seung Cho;
Licausi, Francesco;
Kosmacz, Monika;
Oosumi, Teruko;
van Dongen, Joost T.;
Bailey-Serres, Julia;
Perata, Pierdomenico

Publication type:

Article

In TFIIH, XPD Helicase Is Exclusively Devoted to DNA Repair.

Published in:

PLoS Biology, 2014, v. 12, n. 9, p. 1, doi. 10.1371/journal.pbio.1001954

By:

Kuper, Jochen;
Braun, Cathy;
Elias, Agnes;
Michels, Gudrun;
Sauer, Florian;
Schmitt, Dominik R.;
Poterszman, Arnaud;
Egly, Jean-Marc;
Kisker, Caroline

Publication type:

Article

Live Cell Imaging Unveils Multiple Domain Requirements for In Vivo Dimerization of the Glucocorticoid Receptor.

Published in:

PLoS Biology, 2014, v. 12, n. 3, p. 1, doi. 10.1371/journal.pbio.1001813

By:

Presman, Diego M.;
Ogara, M. Florencia;
Stortz, Martín;
Alvarez, Lautaro D.;
Pooley, John R.;
Schiltz, R. Louis;
Grøntved, Lars;
Johnson, Thomas A.;
Mittelstadt, Paul R.;
Ashwell, Jonathan D.;
Ganesan, Sundar;
Burton, Gerardo;
Levi, Valeria;
Hager, Gordon L.;
Pecci, Adali

Publication type:

Article

The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-κB.

Published in:

PLoS Biology, 2013, v. 11, n. 12, p. 1, doi. 10.1371/journal.pbio.1001750

By:

Ahmed, Yasar Luqman;
Gerke, Jennifer;
Park, Hee-Soo;
Bayram, Özgür;
Neumann, Piotr;
Ni, Min;
Dickmanns, Achim;
Kim, Sun Chang;
Yu, Jae-Hyuk;
Braus, Gerhard H.;
Ficner, Ralf

Publication type:

Article

Topology and Dynamics of the Zebrafish Segmentation Clock Core Circuit.

Published in:

PLoS Biology, 2012, v. 10, n. 7, p. 1, doi. 10.1371/journal.pbio.1001364

By:

Schröter, Christian;
Ares, Saúl;
Morelli, Luis G.;
Isakova, Alina;
Hens, Korneel;
Soroldoni, Daniele;
Gajewski, Martin;
Jülicher, Frank;
Maerkl, Sebastian J.;
Deplancke, Bart;
Oates, Andrew C.

Publication type:

Article

Regulation of Nucleotide Excision Repair by UV-DDB: Prioritization of Damage Recognition to Internucleosomal DNA.

Published in:

PLoS Biology, 2011, v. 9, n. 10, p. 1, doi. 10.1371/journal.pbio.1001183

By:

Fei, Jia;
Kaczmarek, Nina;
Luch, Andreas;
Glas, Andreas;
Carell, Thomas;
Naegeli, Hanspeter

Publication type:

Article

-643C > T RANKL gene polymorphism is associated with osteoporosis in Tunisian postmenopausal women.

Published in:

2017

By:

Sassi, R.;
Sahli, H.;
Cheour, E.;
Sellami, S.;
El Gaaied, A. Ben Ammar

Publication type:

journal article

Clinical features of the behavioural variant of frontotemporal dementia that are useful for predicting underlying pathological subtypes of frontotemporal lobar degeneration.

Published in:

Psychogeriatrics, 2018, v. 18, n. 4, p. 307, doi. 10.1111/psyg.12334

By:

Kobayashi, Zen;
Arai, Tetsuaki;
Kawakami, Ito;
Yokota, Osamu;
Hosokawa, Masato;
Oshima, Kenichi;
Niizato, Kazuhiro;
Shiraishi, Atsushi;
Akiyama, Haruhiko;
Mizusawa, Hidehiro

Publication type:

Article

Predictive Recognition of DNA-binding Proteins Based on Pre-trained Language Model BERT.

Published in:

Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 6, p. 1, doi. 10.1142/S0219720023500282

By:

Ma, Yue;
Pei, Yongzhen;
Li, Changguo

Publication type:

Article

Mining of structural motifs in proteins using artificial bee colony optimization framework for druggability.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 5, p. 1, doi. 10.1142/S0219720021500256

By:

Suma, L. S.;
Vinod Chandra, S. S.

Publication type:

Article

DBP-GAPred: An intelligent method for prediction of DNA-binding proteins types by enhanced evolutionary profile features with ensemble learning.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 4, p. 1, doi. 10.1142/S0219720021500189

By:

Barukab, Omar;
Ali, Farman;
Khan, Sher Afzal

Publication type:

Article

CRITERIA FOR AN UPDATED CLASSIFICATION OF HUMAN TRANSCRIPTION FACTOR DNA-BINDING DOMAINS.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 1, p. -1, doi. 10.1142/S0219720013400076

By:

WINGENDER, EDGAR

Publication type:

Article

FROM BINDING MOTIFS IN CHIP-SEQ DATA TO IMPROVED MODELS OF TRANSCRIPTION FACTOR BINDING SITES.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 1, p. -1, doi. 10.1142/S0219720013400040

By:

KULAKOVSKIY, IVAN;
LEVITSKY, VICTOR;
OSHCHEPKOV, DMITRY;
BRYZGALOV, LEONID;
VORONTSOV, ILYA;
MAKEEV, VSEVOLOD

Publication type:

Article

DISPOM: A DISCRIMINATIVE DE-NOVO MOTIF DISCOVERY TOOL BASED ON THE JSTACS LIBRARY.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 1, p. -1, doi. 10.1142/S0219720013400064

By:

GRAU, JAN;
KEILWAGEN, JENS;
GOHR, ANDRÉ;
PAPONOV, IVAN A.;
POSCH, STEFAN;
SEIFERT, MICHAEL;
STRICKERT, MARC;
GROSSE, IVO

Publication type:

Article

PREDICTION OF DNA-BINDING RESIDUES FROM SEQUENCE FEATURES.

Published in:

Journal of Bioinformatics & Computational Biology, 2006, v. 4, n. 6, p. 1141, doi. 10.1142/S0219720006002387

By:

LIANGJIANG WANG;
BROWN, SUSAN J.

Publication type:

Article

COMPARISON OF STATISTICAL SIGNIFICANCE CRITERIA.

Published in:

Journal of Bioinformatics & Computational Biology, 2006, v. 4, n. 2, p. 537

By:

RÉgnier, Mireille;
Vandenbogaert, Mathias

Publication type:

Article

RAFT Controlled Synthesis of Biodegradable Polymer Brushes on Graphene for DNA Binding and Release.

Published in:

Macromolecular Chemistry & Physics, 2013, v. 214, n. 20, p. 2266, doi. 10.1002/macp.201300338

By:

Liu, Jixian;
Liu, Zhen;
Luo, Xiong;
Zong, Xidan;
Liu, Jingquan

Publication type:

Article

Enhancing the Features of DNA Mimic Foldamers for Structural Investigations.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 16, p. 1, doi. 10.1002/chem.202303650

By:

Corvaglia, Valentina;
Wu, Jiaojiao;
Deepak, Deepak;
Loos, Manuel;
Huc, Ivan

Publication type:

Article

Synechocystis mutants defective in manganese uptake regulatory system, ManSR, are hypersensitive to strong light.

Published in:

Photosynthesis Research, 2016, v. 130, n. 1-3, p. 11, doi. 10.1007/s11120-015-0214-x

By:

Zorina, Anna;
Sinetova, Maria;
Kupriyanova, Elena;
Mironov, Kirill;
Molkova, Irina;
Nazarenko, Lyudmila;
Zinchenko, Vladislav;
Los, Dmitry

Publication type:

Article

Characterization of two naturally truncated, Ssb-like proteins from the nitrogen-fixing cyanobacterium, Anabaena sp. PCC7120.

Published in:

Photosynthesis Research, 2013, v. 117, n. 1-3, p. 147, doi. 10.1007/s11120-013-9904-4

By:

Kirti, Anurag;
Rajaram, Hema;
Apte, Shree Kumar

Publication type:

Article

Letter to the Editor: Assignment of 1H, 13C and 15N resonances of the ARID domain of P270.

Published in:

Journal of Biomolecular NMR, 2003, v. 27, n. 3, p. 277, doi. 10.1023/A:1025434004184

By:

Kim, Suhkmann;
Zhu, Lingyang;
Yu, Bin;
Chen, Yuan

Publication type:

Article

Solution structure of the coiled-coil trimerization domain from lung surfactant protein D.

Published in:

Journal of Biomolecular NMR, 2002, v. 24, n. 2, p. 89, doi. 10.1023/A:1020980006628

By:

Kovacs, Helena;
O'Donoghue, Sean I.;
Hoppe, Hans-Jürgen;
Comfort, David;
Reid, Kenneth B.M.;
Campbell, Iain D.;
Nilges, Michael

Publication type:

Article

Letter to the Editor: 1H, 15N and 13C resonance assignments for the DNA-binding domain of myocyte nuclear factor (Foxk1).

Published in:

Journal of Biomolecular NMR, 2002, v. 24, n. 1, p. 75, doi. 10.1023/A:1020616926152

By:

Chuang, Woei-Jer;
Yeh, I-Ju;
Hsieh, Yu-Huei;
Liu, Pei-Phen;
Chen, Shu-Wan;
Jeng, Wen-Yih

Publication type:

Article

Letter to the Editor: 1H, 13C and 15N resonance assignments and secondary structure of ADR6 DNA-binding domain.

Published in:

Journal of Biomolecular NMR, 2001, v. 21, n. 2, p. 187, doi. 10.1023/A:1012434510376

By:

Tu, Xiaoming;
Wu, Jihui;
Xu, Yingqi;
Shi, Yunyu

Publication type:

Article

A DNA-scaffold platform enhances a multi-enzymatic cycling reaction.

Published in:

Biotechnology Letters, 2018, v. 40, n. 4, p. 667, doi. 10.1007/s10529-018-2517-4

By:

Mashimo, Yasumasa;
Mie, Masayasu;
Kobatake, Eiry

Publication type:

Article

Dof transcription factors in carrot: genome-wide analysis and their response to abiotic stress.

Published in:

Biotechnology Letters, 2016, v. 38, n. 1, p. 145, doi. 10.1007/s10529-015-1966-2

By:

Huang, Wei;
Huang, Ying;
Li, Meng-yao;
Wang, Feng;
Xu, Zhi-sheng;
Xiong, Ai-sheng

Publication type:

Article

Proteome analysis of Escherichia coli periplasmic proteins in response to over-expression of recombinant human interferon α2b.

Published in:

Biotechnology Letters, 2014, v. 36, n. 7, p. 1479, doi. 10.1007/s10529-014-1504-7

By:

Heidary, Somayyeh;
Rahim, Raha;
Eissazadeh, Samira;
Moeini, Hassan;
Chor, Adam;
Abdullah, Mohd

Publication type:

Article

In vitro preparation of amelogenin nanoparticles carrying nucleic acids.

Published in:

Biotechnology Letters, 2014, v. 36, n. 6, p. 1349, doi. 10.1007/s10529-014-1492-7

By:

Bonde, Johan;
Bülow, Leif

Publication type:

Article

In vitro evolution of glutathione S-transferase using a plasmid display system based on the GAL4 DNA-binding domain.

Published in:

Biotechnology Letters, 2013, v. 35, n. 9, p. 1455, doi. 10.1007/s10529-013-1223-5

By:

Choi, Yoo;
Yoo, Young

Publication type:

Article

Streptomycin production by Streptomyces griseus can be modulated by a mechanism not associated with change in the adpA component of the A-factor cascade.

Published in:

Biotechnology Letters, 2007, v. 29, n. 1, p. 57, doi. 10.1007/s10529-006-9216-2

By:

Hong, Bin;
Phornphisutthimas, Somkiat;
Tilley, Emma;
Baumberg, Simon;
McDowall, Kenneth J.

Publication type:

Article

Cloning and DNA-binding properties of ethylene response factor, LeERF1 and LeERF2, in tomato.

Published in:

Biotechnology Letters, 2005, v. 27, n. 6, p. 423, doi. 10.1007/s10529-005-1777-y

By:

Zhang Hongxing;
Zhu Benzhong;
Yu Bianyun;
Hao Yanling;
Fu Daqi;
Xu Wentao;
Luo Yunbo

Publication type:

Article

In vitroDNA-binding properties of a manganese response regulator (ManR) fromAnabaenasp.

Published in:

Biotechnology Letters, 2005, v. 27, n. 4, p. 233, doi. 10.1007/s10529-004-8296-0

By:

Wei Huang;
Qingyu Wu

Publication type:

Article

The complex whiJ locus mediates environmentally sensitive repression of development of Streptomyces coelicolor A3(2).

Published in:

Antonie van Leeuwenhoek, 2010, v. 98, n. 2, p. 225, doi. 10.1007/s10482-010-9443-3

By:

Aínsa, José;
Bird, Nick;
Ryding, N.;
Findlay, Kim;
Chater, Keith

Publication type:

Article