Works matching DE "DNA supercoiling"

Results: 53

Interplay between DNA supercoiling and transcription elongation.

Published in:

Transcription (2154-1264), 2014, v. 5, n. 3, p. N.PAG, doi. 10.4161/trns.28636

By:

Ma, Jie;
Wang, Michelle

Publication type:

Article

Interplay between DNA supercoiling and transcription elongation.

Published in:

2014

By:

Jie Ma;
Wang, Michelle D.

Publication type:

Opinion

Differential contributions of the latch in Thermotoga maritima reverse gyrase to the binding of single-stranded DNA before and after ATP hydrolysis.

Published in:

Biological Chemistry, 2014, v. 395, n. 1, p. 83, doi. 10.1515/hsz-2013-0177

By:

del Toro Duany, Yoandris;
Ganguly, Agneyo;
Klostermeier, Dagmar

Publication type:

Article

The helix turns at 60: writhing free in chromosomes.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 3, p. 251, doi. 10.1038/nsmb.2533

By:

Sinden, Richard R

Publication type:

Article

Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 3, p. 387, doi. 10.1038/nsmb.2509

By:

Naughton, Catherine;
Avlonitis, Nicolaos;
Corless, Samuel;
Prendergast, James G;
Mati, Ioulia K;
Eijk, Paul P;
Cockroft, Scott L;
Bradley, Mark;
Ylstra, Bauke;
Gilbert, Nick

Publication type:

Article

Structure of a topoisomerase II-DNA-nucleotide complex reveals a new control mechanism for ATPase activity.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 11, p. 1147, doi. 10.1038/nsmb.2388

By:

Schmidt, Bryan H;
Osheroff, Neil;
Berger, James M

Publication type:

Article

Specifically bound BZIP transcription factors modulate DNA supercoiling transitions.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-75711-4

By:

Hörberg, Johanna;
Reymer, Anna

Publication type:

Article

How We Forgot Who Discovered DNA: Why It Matters How You Communicate Your Results.

Published in:

BioEssays, 2019, v. 41, n. 4, p. N.PAG, doi. 10.1002/bies.201900029

By:

Dahm, Ralf;
Banerjee, Mita

Publication type:

Article

In vitro DNA damage characterisation studies on plasmid pBR322 after exposure to γ radiation by Co.

Published in:

Journal of Radioanalytical & Nuclear Chemistry, 2012, v. 291, n. 3, p. 661, doi. 10.1007/s10967-011-1437-8

By:

Jaiswal, Vedansha;
Misra, Pragati;
Shukla, P.;
Ramteke, P.;
Tiku, A.

Publication type:

Article

Application of virtual screening and molecular dynamics for the analysis of selectivity of inhibitors of HU proteins targeted to the DNA-recognition site.

Published in:

Crystallography Reports, 2017, v. 62, n. 6, p. 903, doi. 10.1134/S1063774517060244

By:

Talyzina, A.;
Agapova, Yu.;
Podshivalov, D.;
Timofeev, V.;
Sidorov-Biryukov, D.;
Rakitina, T.

Publication type:

Article

Accumulation of AID in immunoglobulin variable genes in the absence of Topoisomerase I.

Published in:

Turkish Journal of Immunology, 2016, v. 4, p. 22

By:

Saribasak, Huseyin;
Maul, Robert W.;
Cao, Zheng;
Gearhart, Patricia J.

Publication type:

Article

studies of DNa-binding and DNa-cutting mechanism of an azamacrocyclic cerium complex with carboxyl branch.

Published in:

Progress in Reaction Kinetics & Mechanism, 2013, v. 38, n. 3, p. 283, doi. 10.3184/146867813X13738207456695

By:

Feng, Fa-mei;
Cai, Shu-lan;
Liu, Fu-an;
Xie, Jia-qing

Publication type:

Article

Relaxation of DNA supercoiling leads to increased invasion of epithelial cells and protein secretion by Campylobacter jejuni.

Published in:

Molecular Microbiology, 2017, v. 104, n. 1, p. 92, doi. 10.1111/mmi.13614

By:

Scanlan, Eoin;
Ardill, Laura;
Whelan, Matthew V. X.;
Shortt, Claire;
Nally, Jarlath E.;
Bourke, Billy;
Ó Cróinín, Tadhg

Publication type:

Article

Structure of the native supercoiled flagellar hook as a universal joint.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13252-9

By:

Kato, Takayuki;
Makino, Fumiaki;
Miyata, Tomoko;
Horváth, Péter;
Namba, Keiichi

Publication type:

Article

Cryo-EM structure of the complete E. coli DNA gyrase nucleoprotein complex.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12914-y

By:

Vanden Broeck, Arnaud;
Lotz, Christophe;
Ortiz, Julio;
Lamour, Valérie

Publication type:

Article

Transcription-coupled DNA supercoiling in defined protein systems and in E. coli topA mutant strains.

Published in:

IUBMB Life, 2013, v. 65, n. 7, p. 615, doi. 10.1002/iub.1179

By:

Fulcrand, Geraldine;
Zhi, Xiaoduo;
Leng, Fenfei

Publication type:

Article

Investigating DNA supercoiling in eukaryotic genomes.

Published in:

Briefings in Functional Genomics, 2017, v. 16, n. 6, p. 379, doi. 10.1093/bfgp/elx007

By:

Corless, Samuel;
Gilbert, Nick

Publication type:

Article

The benefit of DNA supercoiling during replication.

Published in:

Biochemical Society Transactions, 2013, v. 41, n. 2, p. 646, doi. 10.1042/BST20120281

By:

Schvartzman, Jorge B.;
Martínez-Robles, María-Luisa;
Hernández, Pablo;
Krimer, Dora B.

Publication type:

Article

Determining the topology of stable protein-DNA complexes.

Published in:

Biochemical Society Transactions, 2013, v. 41, n. 2, p. 601, doi. 10.1042/BST20130004

By:

Darcy, Isabel K.;
Vazquez, Mariel

Publication type:

Article

The topology of plasmid-monomerizing Xer site-specific recombination.

Published in:

Biochemical Society Transactions, 2013, v. 41, n. 2, p. 589, doi. 10.1042/BST20120340

By:

Colloms, Sean D.

Publication type:

Article

Studies of bacterial topoisomerases I and III at the single-molecule level.

Published in:

Biochemical Society Transactions, 2013, v. 41, n. 2, p. 571, doi. 10.1042/BST20120297

By:

Terekhova, Ksenia;
Marko, John F.;
Mondragón, Alfonso

Publication type:

Article

Dynamical simulations of DNA supercoiling and compression.

Published in:

Biochemical Society Transactions, 2013, v. 41, n. 2, p. 554, doi. 10.1042/BST20120316

By:

Swigon, David;
Sookkyung Lim;
Yongsam Kim

Publication type:

Article

Co-operative roles for DNA supercoiling and nucleoid-associated proteins in the regulation of bacterial transcription.

Published in:

Biochemical Society Transactions, 2013, v. 41, n. 2, p. 542, doi. 10.1042/BST20120222

By:

Dorman, Charles J.

Publication type:

Article

Transcription facilitated genome-wide recruitment of topoisomerase I and DNA gyrase.

Published in:

PLoS Genetics, 2017, v. 13, n. 5, p. 1, doi. 10.1371/journal.pgen.1006754

By:

Ahmed, Wareed;
Sala, Claudia;
Hegde, Shubhada R.;
Jha, Rajiv Kumar;
Cole, Stewart T.;
Nagaraja, Valakunja

Publication type:

Article

Mycobacterium tuberculosis DNA gyrase possesses two functional GyrA-boxes.

Published in:

Biochemical Journal, 2013, v. 455, n. 3, p. 285, doi. 10.1042/BJ20130430

By:

BOUIGE, Aurélie;
DARMON, Amélie;
PITON, Jérémie;
ROUE, Mélanie;
PETRELLA, St'ephanie;
CAPTON, Estelle;
FORTERRE, Patrick;
AUBRY, Alexandra;
MAYER, Claudine

Publication type:

Article

Supercoiling of an excised genomic island represses effector gene expression to prevent activation of host resistance.

Published in:

Molecular Microbiology, 2018, v. 110, n. 3, p. 444, doi. 10.1111/mmi.14111

By:

Neale, Helen C.;
Jackson, Robert W.;
Preston, Gail M.;
Arnold, Dawn L.

Publication type:

Article

Negative supercoiling of DNA by gyrase is inhibited in <italic>Salmonella enterica</italic> serovar Typhimurium during adaptation to acid stress.

Published in:

Molecular Microbiology, 2018, v. 107, n. 6, p. 734, doi. 10.1111/mmi.13911

By:

Colgan, Aoife M.;
Quinn, Heather J.;
Kary, Stefani C.;
Mitchenall, Lesley A.;
Maxwell, Anthony;
Cameron, Andrew D. S.;
Dorman, Charles J.

Publication type:

Article

Characterization of Recombinant Human DNA Topoisomerase IIIα Activity Expressed in Yeast1.

Published in:

Journal of Biochemistry, 2000, v. 127, n. 6, p. 1109, doi. 10.1093/oxfordjournals.jbchem.a022705

By:

Hotoda, Nika;
Hanai, Ryo

Publication type:

Article

Low-Energy Ion-Species-Dependent Induction of DNA Double-Strand Breaks: Ion Energy and Fluence Thresholds.

Published in:

Radiation Research, 2017, v. 188, n. 4, p. 426, doi. 10.1667/RR14721.1

By:

Thopan, Prutchayawoot;
Yu, Liangdeng;
Brown, Ian G.;
Tippawan, Udomrat

Publication type:

Article

First Report of a Peroxiredoxin Homologue in Jellyfish: Molecular Cloning, Expression and Functional Characterization of CcPrx4 from Cyanea capillata.

Published in:

Marine Drugs, 2014, v. 12, n. 1, p. 214, doi. 10.3390/md12010214

By:

Zengliang Ruan;
Guoyan Liu;
Beilei Wang;
Yonghong Zhou;
Jia Lu;
Qianqian Wang;
Jie Zhao;
Liming Zhang

Publication type:

Article

In vitro biological evaluation of novel broad-spectrum isothiazolone inhibitors of bacterial type II topoisomerases.

Published in:

2016

By:

Charrier, Cédric;
Salisbury, Anne-Marie;
Savage, Victoria J.;
Moyo, Emmanuel;
Forward, Henry;
Ooi, Nicola;
Cheung, Jonathan;
Metzger, Richard;
McGarry, David;
Walker, Rolf;
Cooper, Ian R.;
Ratcliffe, Andrew J.;
Stokes, Neil R.

Publication type:

journal article

Genome organization: Supercoiled roles.

Published in:

Nature Reviews Genetics, 2013, v. 14, n. 4, p. 238, doi. 10.1038/nrg3452

By:

Stower, Hannah

Publication type:

Article

Radical-induced purine lesion formation is dependent on DNA helical topology.

Published in:

Free Radical Research, 2016, v. 50, p. S91, doi. 10.1080/10715762.2016.1244820

By:

Terzidis, Michael A.;
Prisecaru, Andreea;
Molphy, Zara;
Barron, Niall;
Randazzo, Antonio;
Dumont, Elise;
Krokidis, Marios G.;
Kellett, Andrew;
Chatgilialoglu, Chryssostomos

Publication type:

Article

Bullied no more: when and how DNA shoves proteins around.

Published in:

Quarterly Reviews of Biophysics, 2012, v. 45, n. 3, p. 257, doi. 10.1017/S0033583512000054

By:

Fogg, Jonathan M.;
Randall, Graham L.;
Pettitt, B. Montgomery;
Sumners, De Witt L.;
Harris, Sarah A.;
Zechiedrich, Lynn

Publication type:

Article

Regulatory Effect of DNA Topoisomerase I on T3SS Activity, Antibiotic Susceptibility and Quorum- Sensing-Independent Pyocyanin Synthesis in Pseudomonas aeruginosa.

Published in:

International Journal of Molecular Sciences, 2019, v. 20, n. 5, p. 1116, doi. 10.3390/ijms20051116

By:

Yan, Rong;
Hu, Shikun;
Ma, Ning;
Song, Peiqing;
Liang, Qingqing;
Zhang, Huiqun;
Li, Yanqi;
Shen, Lixin;
Duan, Kangmin;
Chen, Lin

Publication type:

Article

DNA Supercoiling, Topoisomerases, and Cohesin: Partners in Regulating Chromatin Architecture?

Published in:

International Journal of Molecular Sciences, 2018, v. 19, n. 3, p. 884, doi. 10.3390/ijms19030884

By:

Björkegren, Camilla;
Baranello, Laura

Publication type:

Article

Unique features of apicoplast DNA gyrases from Toxoplasma gondii and Plasmodium falciparum.

Published in:

BMC Bioinformatics, 2014, v. 15, n. 1, p. 703, doi. 10.1186/s12859-014-0416-9

By:

Soshichiro Nagano;
Ting-Yu Lin;
Reddy, Jyotheeswara;
Heddle, Jonathan Gardiner

Publication type:

Article

Minicircle DNA purification using a CIM® DEAE-1 monolithic support.

Published in:

Journal of Separation Science, 2016, v. 39, n. 18, p. 3544, doi. 10.1002/jssc.201600375

By:

Diamantino, Tatiana;
Pereira, Patrícia;
Queiroz, João A.;
Sousa, Ângela;
Sousa, Fani

Publication type:

Article

Effect of chromatographic conditions and plasmid DNA size on the dynamic binding capacity of a monolithic support.

Published in:

Journal of Separation Science, 2014, v. 37, n. 17, p. 2284, doi. 10.1002/jssc.201400127

By:

Bicho, Diana;
Sousa, Ângela;
Sousa, Fani;
Queiroz, João;
Tomaz, Cãndida

Publication type:

Article

Purification of supercoiled plasmid DNA from clarified bacterial lysate by arginine-affinity chromatography: Effects of spacer arms and ligand density.

Published in:

Journal of Separation Science, 2014, v. 37, n. 12, p. 1386, doi. 10.1002/jssc.201400092

By:

Bai, Jin‐Shan;
Bai, Shu;
Shi, Qing‐Hong;
Sun, Yan

Publication type:

Article

Supercoiled plasmid DNA purification by integrating membrane technology with a monolithic chromatography.

Published in:

Journal of Separation Science, 2014, v. 37, n. 11, p. 1229, doi. 10.1002/jssc.201301160

By:

Nunes, Catherine;
Sousa, Ângela;
Nunes, José C.;
Morão, António M.;
Sousa, Fani;
Queiroz, João A.

Publication type:

Article

Human topoisomerase inhibition and DNA/BSA binding of Ru(II)- SCAR complexes as potential anticancer candidates for oral application.

Published in:

BioMetals, 2017, v. 30, n. 3, p. 321, doi. 10.1007/s10534-017-0008-z

By:

De Grandis, Rone;
Camargo, Mariana;
Silva, Monize;
Lopes, Érica;
Padilha, Elias;
Resende, Flávia;
Peccinini, Rosângela;
Pavan, Fernando;
Desideri, Alessandro;
Batista, Alzir;
Varanda, Eliana

Publication type:

Article

Structural diversity of supercoiled DNA.

Published in:

Scientific Reports, 2015, p. 8440, doi. 10.1038/ncomms9440

By:

Irobalieva, Rossitza N.;
Fogg, Jonathan M.;
Catanese, Daniel J.;
Sutthibutpong, Thana;
Chen, Muyuan;
Barker, Anna K.;
Ludtke, Steven J.;
Harris, Sarah A.;
Schmid, Michael F.;
Chiu, Wah;
Zechiedrich, Lynn

Publication type:

Article

An Inverted Repeat in the <i>ospC</i> Operator Is Required for Induction in <i>Borrelia burgdorferi</i>.

Published in:

PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0068799

By:

Drecktrah, Dan;
Hall, Laura S.;
Hoon-Hanks, Laura L.;
Samuels, D. Scott

Publication type:

Article

Hsmar1 Transposition Is Sensitive to the Topology of the Transposon Donor and the Target.

Published in:

PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0053690

By:

Bouuaert, Corentin Claeys;
Chalmers, Ronald

Publication type:

Article

NAP1-Assisted Nucleosome Assembly on DNA Measured in Real Time by Single-Molecule Magnetic Tweezers.

Published in:

PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0046306

By:

Vlijm, Rifka;
Smitshuijzen, Jeremy S. J.;
Lusser, Alexandra;
Dekker, Cees;
Dalal, Yamini

Publication type:

Article

Direct Observation of Strand Passage by DNA-Topoisomerase and Its Limited Processivity.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0034920

By:

Yogo, Katsunori;
Ogawa, Taisaku;
Hayashi, Masahito;
Harada, Yoshie;
Nishizaka, Takayuki;
Kinosita Jr., Kazuhiko

Publication type:

Article

Evaluation of Two Models for Human Topoisomerase I Interaction with dsDNA and Camptothecin Derivatives.

Published in:

PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0024314

By:

Laco, Gary S.

Publication type:

Article

Enhancement of PCR Detection Limit by Single-Tube Restriction Endonuclease-PCR (RE-PCR).

Published in:

Molecular Diagnosis & Therapy, 2016, v. 20, n. 3, p. 297, doi. 10.1007/s40291-016-0195-2

By:

Datta, Sibnarayan;
Budhauliya, Raghvendra;
Chatterjee, Soumya;
Vanlalhmuaka;
Veer, Vijay;
Chakravarty, Runu

Publication type:

Article

Rates of Gyrase Supercoiling and Transcription Elongation Control Supercoil Density in a Bacterial Chromosome.

Published in:

PLoS Genetics, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.pgen.1002845

By:

Rovinskiy, Nikolay;
Agbleke, Andrews Akwasi;
Chesnokova, Olga;
Pang, Zhenhua;
Higgins, N. Patrick

Publication type:

Article