Works matching DE "DNA modification %26 restriction"

Results: 219

Exploring Mobile Genetic Elements in Vibrio choleraeOpen Access.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 5, p. 1, doi. 10.1093/gbe/evaf079

By:

Dörr, Natália C Drebes;
Lemopoulos, Alexandre;
Blokesch, Melanie

Publication type:

Article

Advances in Diversity, Evolutionary Dynamics and Biotechnological Potential of Restriction-Modification Systems.

Published in:

Microorganisms, 2025, v. 13, n. 5, p. 1126, doi. 10.3390/microorganisms13051126

By:

Chen, Chen;
Zhang, Yue;
Wu, Hao;
Qiao, Jianjun;
Caiyin, Qinggele

Publication type:

Article

Restriction–Modification Systems Specific toward GGATC, GATGC, and GATGG. Part 1. Evolution and Ecology.

Published in:

Biochemistry (00062979), 2025, v. 90, n. 4, p. 502, doi. 10.1134/S0006297925600115

By:

Spirin, Sergey;
Rusinov, Ivan;
Makarikova, Olga;
Alexeevski, Andrei;
Karyagina, Anna

Publication type:

Article

Epigenetics at the epicenter of a revolution in ARTs.

Published in:

Journal of Assisted Reproduction & Genetics, 2018, v. 35, n. 6, p. 931, doi. 10.1007/s10815-018-1245-y

By:

Albertini, David F.

Publication type:

Article

PsasM2I, a Type II Restriction-Modification System in Pseudomonas savastanoi pv. savastanoi: Differential Distribution of Carrier Strains in the Environment and the Evolutionary History of Homologous RM Systems in the Pseudomonas syringae Complex.

Published in:

Microbial Ecology, 2014, v. 68, n. 4, p. 842, doi. 10.1007/s00248-014-0451-0

By:

Cinelli, Tamara;
Moscetti, Ilaria;
Marchi, Guido

Publication type:

Article

Identification of differentially methylated loci using wavelet-based functional mixed models.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 664, doi. 10.1093/bioinformatics/btv659

By:

Wonyul Lee;
Morris, Jeffrey S.

Publication type:

Article

A parallel and sensitive software tool for methylation analysis on multicore platforms.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3130, doi. 10.1093/bioinformatics/btv357

By:

Tárraga, Joaquín;
Pérez, Mariano;
Ordunña, Juan M.;
Duato, José;
Medina, Ignacio;
Dopazo, Joaquín

Publication type:

Article

MethylAid: visual and interactive quality control of large Illumina 450k datasets.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3435, doi. 10.1093/bioinformatics/btu566

By:

van Iterson, Maarten;
Tobi, Elmar W.;
Slieker, Roderick C.;
den Hollander, Wouter;
Luijk, René;
Slagboom, P. Eline;
Heijmans, Bastiaan T.

Publication type:

Article

LINE-1 transcription in round spermatids is associated with accretion of 5-carboxylcytosine in their open reading frames.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02217-8

By:

Blythe, Martin J.;
Kocer, Ayhan;
Rubio-Roldan, Alejandro;
Giles, Tom;
Abakir, Abdulkadir;
Ialy-Radio, Côme;
Wheldon, Lee M.;
Bereshchenko, Oxana;
Bruscoli, Stefano;
Kondrashov, Alexander;
Drevet, Joël R.;
Emes, Richard D.;
Johnson, Andrew D.;
McCarrey, John R.;
Gackowski, Daniel;
Olinski, Ryszard;
Cocquet, Julie;
Garcia-Perez, Jose L.;
Ruzov, Alexey

Publication type:

Article

Complete genome sequence of Helicobacter pylori B128 7.13 and a single‐step method for the generation of unmarked mutations.

Published in:

Helicobacter, 2019, v. 24, n. 4, p. N.PAG, doi. 10.1111/hel.12587

By:

Dawson, Emma M.;
Dunne, Karl A.;
Richardson, Emily J.;
Praszkier, Judyta;
Alfawaz, Dana;
Woelfel, Simon;
De Paoli, Amanda;
Chaudhry, Hassan;
Henderson, Ian R.;
Ferrero, Richard L.;
Rossiter, Amanda E.

Publication type:

Article

Horizontal transfer and phylogenetic distribution of the immune evasion factor tarP.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.951333

By:

Gerlach, David;
Sieber, Raphael N.;
Larsen, Jesper;
Krusche, Janes;
De Castro, Cristina;
Baumann, Juliane;
Molinaro, Antonio;
Peschel, Andreas

Publication type:

Article

Comparative analysis reveals distinctive genomic features of Taiwan hot-spring cyanobacterium Thermosynechococcus sp. TA-1.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.932840

By:

Yen-I Cheng;
Yu-Chen Lin;
Jyh-Yih Leu;
Chih-Horng Kuo;
Hsiu-An Chu

Publication type:

Article

Comparative Genomics of Thaumarchaeota From Deep-Sea Sponges Reveal Their Niche Adaptation.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.869834

By:

Peng Wang;
Minchun Li;
Liang Dong;
Cheng Zhang;
Wei Xie

Publication type:

Article

Genomic Analysis of Molecular Bacterial Mechanisms of Resistance to Phage Infection.

Published in:

Frontiers in Microbiology, 2022, v. 12, p. 1, doi. 10.3389/fmicb.2021.784949

By:

Ambroa, Antón;
Blasco, Lucia;
López, María;
Pacios, Olga;
Bleriot, Inés;
Fernández-García, Laura;
González de Aledo, Manuel;
Ortiz-Cartagena, Concha;
Millard, Andrew;
Tomás, María

Publication type:

Article

The complete genome sequence of unculturable Mycoplasma faucium obtained through clinical metagenomic next-generation sequencing.

Published in:

Frontiers in Cellular & Infection Microbiology, 2024, p. 1, doi. 10.3389/fcimb.2024.1368923

By:

Sabat, Artur J.;
Durfee, Tim;
Baldwin, Schuyler;
Akkerboom, Viktoria;
Voss, Andreas;
Friedrich, Alexander W.;
Bathoorn, Erik

Publication type:

Article

The Ethics of Germline Gene Editing.

Published in:

Journal of Applied Philosophy, 2017, v. 34, n. 4, p. 498, doi. 10.1111/japp.12249

By:

Gyngell, Christopher;
Douglas, Thomas;
Savulescu, Julian

Publication type:

Article

Harnessing epigenome modifications for better crops.

Published in:

Journal of Experimental Botany, 2016, v. 67, n. 9, p. 2535, doi. 10.1093/jxb/erw143

By:

Giovannoni, James

Publication type:

Article

The Evolutionary History of a DNA Methylase Reveals Frequent Horizontal Transfer and Within-Gene Recombination.

Published in:

Genes, 2023, v. 14, n. 2, p. 288, doi. 10.3390/genes14020288

By:

Gosselin, Sophia P.;
Arsenault, Danielle R.;
Jennings, Catherine A.;
Gogarten, Johann Peter

Publication type:

Article

Synergistic Activity of Mobile Genetic Element Defences in Streptococcus pneumoniae.

Published in:

Genes, 2019, v. 10, n. 9, p. 707, doi. 10.3390/genes10090707

By:

Kwun, Min Jung;
Oggioni, Marco R.;
Bentley, Stephen D.;
Fraser, Christophe;
Croucher, Nicholas J.

Publication type:

Article

The Patchy Distribution of Restriction–Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria.

Published in:

Genes, 2019, v. 10, n. 3, p. 233, doi. 10.3390/genes10030233

By:

Fullmer, Matthew S.;
Ouellette, Matthew;
Louyakis, Artemis S.;
Papke, R. Thane;
Gogarten, Johann Peter

Publication type:

Article

Enhancing the Anticancer Efficacy of Immunotherapy through Combination with Histone Modification Inhibitors.

Published in:

Genes, 2018, v. 9, n. 12, p. 633, doi. 10.3390/genes9120633

By:

Sun, Wanyu;
Lv, Shuting;
Li, Hong;
Cui, Wei;
Wang, Lihui

Publication type:

Article

A Model Stacking Framework for Identifying DNA Binding Proteins by Orchestrating Multi-View Features and Classifiers.

Published in:

Genes, 2018, v. 9, n. 8, p. 394, doi. 10.3390/genes9080394

By:

Liu, Xiu-Juan;
Gong, Xiu-Jun;
Yu, Hua;
Xu, Jia-Hui

Publication type:

Article

Ability of PITX2 methylation to predict survival in patients with prostate cancer.

Published in:

OncoTargets & Therapy, 2015, v. 8, p. 3507, doi. 10.2147/OTT.S83914

By:

Jiu-zhi Li;
Yu Zhang;
Bin Wen;
Ming Li;
Yu-jie Wang

Publication type:

Article

European Group on Ethics in Science and New Technologies (EGE) Statement on Gene Editing.

Published in:: Jahrbuch für Wissenschaft und Ethik, 2017, v. 21, n. 1, p. 241, doi. 10.1515/jwiet-2017-0114
Publication type:: Article

The Academy of Medical Sciences, Association of Medical Research Charities, Cancer Research UK, Biotechnology and Biological Sciences Research Council, Medical Research Council, Progress Educational Trust, Wellcome Trust, Wellcome Trust Sanger Institute (UK) Genome Editing in Human Cells - Initial Joint Statement

Published in:: Jahrbuch für Wissenschaft und Ethik, 2017, v. 21, n. 1, p. 245, doi. 10.1515/jwiet-2017-0115
Publication type:: Article

Transcriptional landscape of the pMP7017 megaplasmid and its impact on the Bifidobacterium breveUCC2003 transcriptome.

Published in:

Microbial Biotechnology, 2024, v. 17, n. 1, p. 1, doi. 10.1111/1751-7915.14405

By:

Dineen, Rebecca L.;
Bottacini, Francesca;
O'Connell‐Motherway, Mary;
van Sinderen, Douwe

Publication type:

Article

Delineation of a lactococcal conjugation system reveals a restriction‐modification evasion system.

Published in:

Microbial Biotechnology, 2023, v. 16, n. 6, p. 1250, doi. 10.1111/1751-7915.14221

By:

Ortiz Charneco, Guillermo;
Kelleher, Philip;
Buivydas, Andrius;
Dashko, Sofia;
de Waal, Paul P.;
van Peij, Noël N. M. E.;
Roberts, Richard J.;
Mahony, Jennifer;
van Sinderen, Douwe

Publication type:

Article

An in vivo screen identifies ependymoma oncogenes and tumor-suppressor genes.

Published in:

Nature Genetics, 2015, v. 47, n. 8, p. 878, doi. 10.1038/ng.3323

By:

Mohankumar, Kumarasamypet M;
Currle, David S;
White, Elsie;
Boulos, Nidal;
Dapper, Jason;
Eden, Christopher;
Nimmervoll, Birgit;
Thiruvenkatam, Radhika;
Connelly, Michele;
Kranenburg, Tanya A;
Neale, Geoffrey;
Olsen, Scott;
Wang, Yong-Dong;
Finkelstein, David;
Wright, Karen;
Gupta, Kirti;
Ellison, David W;
Thomas, Arzu Onar;
Gilbertson, Richard J

Publication type:

Article

2‐Allyl‐ and Propargylamino‐dATPs for Site‐Specific Enzymatic Introduction of a Single Modification in the Minor Groove of DNA.

Published in:

Chemistry - A European Journal, 2018, v. 24, n. 56, p. 14938, doi. 10.1002/chem.201803973

By:

Matyašovský, Ján;
Pohl, Radek;
Hocek, Michal

Publication type:

Article

Novel pseudo-staphylococcal cassette chromosome mec element (φSCCmecT55) in MRSA ST9.

Published in:

2019

By:

Jiang, Nansong;
Li, Jun;
Feßler, Andrea T;
Wang, Yang;
Schwarz, Stefan;
Wu, Congming

Publication type:

Letter

Evolution of Restriction–Modification Systems Consisting of One Restriction Endonuclease and Two DNA Methyltransferases.

Published in:

Biochemistry (00062979), 2023, v. 88, n. 2, p. 253, doi. 10.1134/S0006297923020086

By:

Fokina, Anastasiya S.;
Karyagina, Anna S.;
Rusinov, Ivan S.;
Moshensky, Denis M.;
Spirin, Sergey A.;
Alexeevski, Andrey V.

Publication type:

Article

Rational development of transformation in Clostridium thermocellum ATCC 27405 via complete methylome analysis and evasion of native restriction–modification systems.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2019, v. 46, n. 9/10, p. 1435, doi. 10.1007/s10295-019-02218-x

By:

Riley, Lauren A.;
Ji, Lexiang;
Schmitz, Robert J.;
Westpheling, Janet;
Guss, Adam M.

Publication type:

Article

Structural basis for broad anti-phage immunity by DISARM.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30673-1

By:

Bravo, Jack P. K.;
Aparicio-Maldonado, Cristian;
Nobrega, Franklin L.;
Brouns, Stan J. J.;
Taylor, David W.

Publication type:

Article

Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding.

Published in:

Epigenetics & Chromatin, 2018, v. 11, p. 1, doi. 10.1186/s13072-018-0174-4

By:

Rao, Satyanarayan;
Chiu, Tsu-Pei;
Kribelbauer, Judith F.;
Mann, Richard S.;
Bussemaker, Harmen J.;
Rohs, Remo

Publication type:

Article

Epigenetic regulatory functions of DNA modifications: 5-methylcytosine and beyond.

Published in:

Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13072-015-0016-6

By:

Breiling, Achim;
Lyko, Frank

Publication type:

Article

Correction: DNA methylation and transcriptional noise.

Published in:: 2014
Publication type:: Correction Notice

DNA methylation and transcriptional noise.

Published in:

Epigenetics & Chromatin, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-8935-6-9

By:

Iksoo Huh;
Jia Zeng;
Taesung Park;
Soojin V. Yi

Publication type:

Article

Analysis of the Campylobacter jejuni Genome by SMRT DNA Sequencing Identifies Restriction-Modification Motifs.

Published in:

PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0118533

By:

O’Loughlin, Jason L.;
Eucker, Tyson P.;
Chavez, Juan D.;
Samuelson, Derrick R.;
Neal-McKinney, Jason;
Gourley, Christopher R.;
Bruce, James E.;
Konkel, Michael E.

Publication type:

Article

In Vivo Mutational Characterization of DndE Involved in DNA Phosphorothioate Modification.

Published in:

PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0107981

By:

Lai, Chongde;
Wu, Xiaolin;
Chen, Chao;
Huang, Teng;
Xiong, Xiaolin;
Wu, Shuangju;
Gu, Meijia;
Deng, Zixin;
Chen, Xi;
Chen, Shi;
Wang, Lianrong

Publication type:

Article

Structural and Mutagenic Analysis of the RM Controller Protein C.Esp1396I.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0098365

By:

Martin, Richard N. A.;
McGeehan, John E.;
Kneale, Geoff

Publication type:

Article

Identification of Restriction-Modification Systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT Sequencing and Associated Methylome Analysis.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094875

By:

O′Connell Motherway, Mary;
Watson, Debbie;
Bottacini, Francesca;
Clark, Tyson A.;
Roberts, Richard J.;
Korlach, Jonas;
Garault, Peggy;
Chervaux, Christian;
van Hylckama Vlieg, Johan E. T.;
Smokvina, Tamara;
van Sinderen, Douwe

Publication type:

Article

Flexibility of the Linker between the Domains of DNA Methyltransferase SsoII Revealed by Small-Angle X-Ray Scattering: Implications for Transcription Regulation in SsoII Restriction–Modification System.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0093453

By:

Konarev, Petr V.;
Kachalova, Galina S.;
Ryazanova, Alexandra Yu;
Kubareva, Elena A.;
Karyagina, Anna S.;
Bartunik, Hans D.;
Svergun, Dmitri I.

Publication type:

Article

Mapping and Validation of the Major Sex-Determining Region in Nile Tilapia (Oreochromis niloticus L.) Using RAD Sequencing.

Published in:

PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0068389

By:

Palaiokostas, Christos;
Bekaert, Michaël;
Khan, Mohd G. Q.;
Taggart, John B.;
Gharbi, Karim;
McAndrew, Brendan J.;
Penman, David J.

Publication type:

Article

An Efficient Low Cost Method for Gene Transfer to T Lymphocytes.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0060298

By:

Chicaybam, Leonardo;
Sodre, Andressa Laino;
Curzio, Bianca Azevedo;
Bonamino, Martin Hernan

Publication type:

Article

Transcriptional Suppression, DNA Methylation, and Histone Deacetylation of the Regulator of G-Protein Signaling 10 (RGS10) Gene in Ovarian Cancer Cells.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0060185

By:

Ali, Mourad W.;
Cacan, Ercan;
Liu, Yuying;
Pierce, Jennifer Young;
Creasman, William T.;
Murph, Mandi M.;
Govindarajan, Rajgopal;
Eblen, Scott T.;
Greer, Susanna F.;
Hooks, Shelley B.

Publication type:

Article

Genome editing for understanding and improving the brain.

Published in:

2019

By:

Dan, Bernard

Publication type:

Editorial

Genomic dissection of the most prevalent Listeria monocytogenes clone, sequence type ST87, in China.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6399-1

By:

Wang, Yan;
Luo, Lijuan;
Li, Qun;
Wang, Hong;
Wang, Yiqian;
Sun, Hui;
Xu, Jianguo;
Lan, Ruiting;
Ye, Changyun

Publication type:

Article

A Type I Restriction Modification System Influences Genomic Evolution Driven by Horizontal Gene Transfer in Paenibacillus polymyxa.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.709571

By:

Chen, Ziyan;
Shen, Minjia;
Mao, Chengyao;
Wang, Chenyu;
Yuan, Panhong;
Wang, Tingzhang;
Sun, Dongchang

Publication type:

Article

The Hyperthermophilic Restriction-Modification Systems of Thermococcus kodakarensis Protect Genome Integrity.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.657356

By:

Zatopek, Kelly M.;
Burkhart, Brett W.;
Morgan, Richard D.;
Gehring, Alexandra M.;
Scott, Kristin A.;
Santangelo, Thomas J.;
Gardner, Andrew F.

Publication type:

Article

New Insights into 5hmC DNA Modification: Generation, Distribution and Function.

Published in:

Frontiers in Genetics, 2017, p. 1, doi. 10.3389/fgene.2017.00100

By:

Dong-Qiao Shi;
Ali, Iftikhar;
Jun Tang;
Wei-Cai Yang

Publication type:

Article