Works matching DE "DNA models"

Results: 47

Simulating a burnt-bridges DNA motor with a coarse-grained DNA model.

Published in:

Natural Computing, 2014, v. 13, n. 4, p. 535, doi. 10.1007/s11047-013-9391-8

By:

Šulc, Petr;
Ouldridge, Thomas;
Romano, Flavio;
Doye, Jonathan;
Louis, Ard

Publication type:

Article

Rosalind Franklin and the Discovery of the Structure of DNA: Using Historical Narratives to Help Students Understand Nature of Science.

Published in:

Science & Education, 2021, v. 30, n. 3, p. 659, doi. 10.1007/s11191-020-00188-6

By:

Dai, Peng;
Williams, Cody Tyler;
Witucki, Allison Michelle;
Rudge, David Wÿss

Publication type:

Article

A quasi-dynamic model and a symplectic algorithm of super slender Kirchhoff rod.

Published in:

International Journal of Modeling, Simulation & Scientific Computing, 2017, v. 8, n. 3, p. -1, doi. 10.1142/S1793962317500374

By:

Yang, Dandan;
Huang, Jianfei;
Zhao, Weijia

Publication type:

Article

Film tension of liquid nano-film from molecular modeling.

Published in:

International Journal of Modern Physics B: Condensed Matter Physics; Statistical Physics; Applied Physics, 2017, v. 31, n. 4, p. -1, doi. 10.1142/S0217979217500163

By:

Peng, Tiefeng;
Yang, Siyuan;
Xiang, Fan;
Liang, Yunpei;
Li, Qibin;
Gao, Xuechao;
Liu, Sanjun

Publication type:

Article

A Coarse-Grained DNA Model Parameterized from Atomistic Simulations by Inverse Monte Carlo.

Published in:

Polymers (20734360), 2014, v. 6, n. 6, p. 1655, doi. 10.3390/polym6061655

By:

Korolev, Nikolay;
Di Luo;
Lyubartsev, Alexander P.;
Nordenskiöld, Lars

Publication type:

Article

Some Aspects of Nonlinearity and Self-Organization In Biosystems on Examples of Localized Excitations in the DNA Molecule and Generalized Fisher--KPP Model.

Published in:

Symmetry (20738994), 2018, v. 10, n. 3, p. 53, doi. 10.3390/sym10030053

By:

Shapovalov, A. V.;
Obukhov, V. V.

Publication type:

Article

DFT study of geometrical and vibrational features of a 3′,5′-deoxydisugar-monophosphate (dDSMP) DNA model in the presence of counterions and solvent.

Published in:

Journal of Molecular Modeling, 2018, v. 24, n. 4, p. 1, doi. 10.1007/s00894-018-3629-4

By:

Minguirbara, Alain;
Nsangou, Mama

Publication type:

Article

Combined action of C<sub>60</sub> fullerene with dimethyl-N-(benzoyl)amidophosphate or dimethyl-N-(phenylsulfonyl)amidophosphate on leukemia L1210 cells in silico and in vitro.

Published in:

Materialwissenschaft und Werkstoffechnik, 2016, v. 47, n. 2/3, p. 98, doi. 10.1002/mawe.201600471

By:

Grynyuk, I. I.;
Prylutska, S. V.;
Franskevych, D. V.;
Trush, V. A.;
Sliva, T. Y.;
Slobodyanik, M. S.;
Hurmach, V. V.;
Prylutskyy, Y. I.;
Matyshevska, O. P.;
Ritter, U.

Publication type:

Article

Parametric Resonance in a Mesoscopic Discrete DNA Model.

Published in:

Acta Applicandae Mathematicae, 2014, v. 132, n. 1, p. 391, doi. 10.1007/s10440-014-9925-9

By:

Lacitignola, D.;
Saccomandi, G.;
Sgura, I.

Publication type:

Article

Interaction of 2'-deoxyguanosine with cis-2-butene-1,4-dial: Computational approach to analysis of multistep chemical reactions.

Published in:

Biopolymers & Cell, 2014, v. 30, n. 3, p. 239, doi. 10.7124/bc.00089C

By:

Sviatenko, L. K.;
Gorb, L. G.;
Hovorun, D. M.;
Leszczynski, J.

Publication type:

Article

Model DNA for investigation of mechanism of nucleotide excision repair.

Published in:

Biopolymers & Cell, 2014, v. 30, n. 3, p. 167, doi. 10.7124/bc.000893

By:

Evdokimov, A. N.;
Lavrik, O. I.;
Petruseva, I. O.

Publication type:

Article

Characterization of the Neisseria meningitidis Helicase RecG.

Published in:

PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0164588

By:

Beyene, Getachew Tesfaye;
Balasingham, Seetha V.;
Frye, Stephan A.;
Namouchi, Amine;
Homberset, Håvard;
Kalayou, Shewit;
Riaz, Tahira;
Tønjum, Tone

Publication type:

Article

Darwin and Fisher meet at biotech: on the potential of computational molecular evolution in industry.

Published in:

BMC Evolutionary Biology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12862-015-0352-y

By:

Anisimova, Maria

Publication type:

Article

Polymer Solar Cells: Enhanced Charge Separation Efficiency in DNA Templated Polymer Solar Cells (Adv. Funct. Mater. 26/2018).

Published in:

2018

By:

Toschi, Francesco;
Catone, Daniele;
O'keeffe, Patrick;
Paladini, Alessandra;
Turchini, Stefano;
Dagar, Janardan;
Brown, Thomas M.

Publication type:

Cover Art

Enhanced Charge Separation Efficiency in DNA Templated Polymer Solar Cells.

Published in:

Advanced Functional Materials, 2018, v. 28, n. 26, p. 1, doi. 10.1002/adfm.201707126

By:

Toschi, Francesco;
Catone, Daniele;
O'keeffe, Patrick;
Paladini, Alessandra;
Turchini, Stefano;
Dagar, Janardan;
Brown, Thomas M.

Publication type:

Article

Hydrolytic cleavage of a DNA-model phosphodiester: a new inorganic–organic hybrid constructed from a Zn-cluster with a polyoxometalate.

Published in:

Journal of Coordination Chemistry, 2013, v. 66, n. 14, p. 2405, doi. 10.1080/00958972.2013.805323

By:

Li, Jie;
Huang, Yuan;
Han, Qiuxia

Publication type:

Article

REASONING IN THE FUZZY FRONT END OF INNOVATION: FRAMING THE PRODUCT DNA.

Published in:

International Journal of Innovation Management, 2018, v. 22, n. 5, p. N.PAG, doi. 10.1142/S1363919618400017

By:

HAASE, LOUISE MØLLER;
LAURSEN, LINDA NHU

Publication type:

Article

Three distinct pneumotypes characterize the microbiome of the lung in BALB/cJ mice.

Published in:

PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0180561

By:

Scheiermann, Julia;
Klinman, Dennis M.

Publication type:

Article

NoLogo: a new statistical model highlights the diversity and suggests new classes of Crm1-dependent nuclear export signals.

Published in:

BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2076-7

By:

Liku, Muluye E.;
Legere, Elizabeth-Ann;
Moses, Alan M.

Publication type:

Article

Solving Vertex Cover Problem Using DNA Tile Assembly Model.

Published in:

Journal of Applied Mathematics, 2013, p. 1, doi. 10.1155/2013/407816

By:

Zhihua Chen;
Tao Song;
Yufang Huang;
Xiaolong Shi

Publication type:

Article

DNA glycosylases search for and remove oxidized DNA bases.

Published in:

Environmental & Molecular Mutagenesis, 2013, v. 54, n. 9, p. 691, doi. 10.1002/em.21820

By:

Wallace, Susan S.

Publication type:

Article

Exploring the Genetic Underpinnings of Brain and Behavioral Disorders.

Published in:

Journal of Neurogenetics, 2014, v. 28, n. 1/2, p. 1, doi. 10.3109/01677063.2014.908875

By:

Yao, Wei-Dong;
Wu, Chun-Fang

Publication type:

Article

How We Forgot Who Discovered DNA: Why It Matters How You Communicate Your Results.

Published in:

BioEssays, 2019, v. 41, n. 4, p. N.PAG, doi. 10.1002/bies.201900029

By:

Dahm, Ralf;
Banerjee, Mita

Publication type:

Article

Comparative performance of two whole-genome capture methodologies on ancient DNA Illumina libraries.

Published in:

Methods in Ecology & Evolution, 2015, v. 6, n. 6, p. 725, doi. 10.1111/2041-210X.12353

By:

Ávila‐Arcos, María C.;
Sandoval‐Velasco, Marcela;
Schroeder, Hannes;
Carpenter, Meredith L.;
Malaspinas, Anna‐Sapfo;
Wales, Nathan;
Peñaloza, Fernando;
Bustamante, Carlos D.;
Gilbert, M. Thomas P.;
Bunce, Michael

Publication type:

Article

Molecular Modeling of Indeno [1, 2-b] Quinoline-9, 11-Diones as Cytotoxic Agents.

Published in:

Iranian Journal of Pharmaceutical Research, 2018, v. 17, n. 4, p. 1249

By:

Miri, Ramin;
Bohlooli, Fatemeh;
Razzaghi-Asl, Nima;
Ebadi, Ahmad

Publication type:

Article

Light-emitting self-assembled peptide nucleic acids exhibit both stacking interactions and Watson-Crick base pairing.

Published in:

Nature Nanotechnology, 2015, v. 10, n. 4, p. 353, doi. 10.1038/nnano.2015.27

By:

Berger, Or;
Adler-Abramovich, Lihi;
Levy-Sakin, Michal;
Grunwald, Assaf;
Liebes-Peer, Yael;
Bachar, Mor;
Buzhansky, Ludmila;
Mossou, Estelle;
Forsyth, V. Trevor;
Schwartz, Tal;
Ebenstein, Yuval;
Frolow, Felix;
Shimon, Linda J. W.;
Patolsky, Fernando;
Gazit, Ehud

Publication type:

Article

Genomic population structure and prevalence of copy number variations in South African Nguni cattle.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2122-z

By:

Wang, Magretha Diane;
Dzama, Kennedy;
Hefer, Charles A.;
Muchadeyi, Farai C.

Publication type:

Article

Going Beyond the: Using modeling to teach DNA replication.

Published in:

Science Teacher, 2018, v. 85, n. 2, p. 47

By:

ROBERTSON, CAROL

Publication type:

Article

DNA structure-specific priming of ATR activation by DNA-PKcs.

Published in:

Journal of Cell Biology, 2013, v. 202, n. 3, p. 421, doi. 10.1083/jcb.201304139

By:

Vidal-Eychenié, Sophie;
Décaillet, Chantal;
Basbous, Jihane;
Constantinou, Angelos

Publication type:

Article

Comparing the Use of Two Different Model Approaches on Students' Understanding of DNA Models.

Published in:

Education Sciences, 2019, v. 9, n. 2, p. 115, doi. 10.3390/educsci9020115

By:

Mierdel, Julia;
Bogner, Franz X.

Publication type:

Article

SYNTHESISING SCIENTISTS.

Published in:

Biologist, 2017, v. 64, n. 3, p. 22

By:

Freemont, Paul

Publication type:

Article

Identifying DNA motifs based on match and mismatch alignment information.

Published in:

Journal of Mathematical Chemistry, 2013, v. 51, n. 7, p. 1720, doi. 10.1007/s10910-013-0175-2

By:

Shu, Jian-Jun;
Yong, Kian

Publication type:

Article

Models and algorithms for genome rearrangement with positional constraints.

Published in:

Algorithms for Molecular Biology, 2016, v. 11, p. 1, doi. 10.1186/s13015-016-0065-9

By:

Swenson, Krister M.;
Simonaitis, Pijus;
Blanchette, Mathieu

Publication type:

Article

Sliding of Proteins Non-specifically Bound to DNA: Brownian Dynamics Studies with Coarse-Grained Protein and DNA Models.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003990

By:

Ando, Tadashi;
Skolnick, Jeffrey

Publication type:

Article

Orthogonal Dual-Triggered Shape-Memory DNA-Based Hydrogels.

Published in:

Chemistry - A European Journal, 2016, v. 22, n. 41, p. 14504, doi. 10.1002/chem.201603653

By:

Yu, Xu;
Hu, Yuwei;
Kahn, Jason S.;
Cecconello, Alessandro;
Willner, Itamar

Publication type:

Article

New DNA coalescent models and old population genetics software.

Published in:

ICES Journal of Marine Science / Journal du Conseil, 2016, v. 73, n. 9, p. 2178, doi. 10.1093/icesjms/fsw076

By:

Grant, W. Stewart;
Árnason, Einar;
Eldon, Bjarki

Publication type:

Article

Covariance analysis for temporal data, with applications to DNA modelling.

Published in:

Stat, 2017, v. 6, n. 1, p. 218, doi. 10.1002/sta4.149

By:

Dryden, Ian;
Hill, Blake;
Wang, Hao;
Laughton, Charles

Publication type:

Article

Synthetic biology: Six pack and stack.

Published in:

Nature Chemistry, 2015, v. 7, n. 8, p. 617, doi. 10.1038/nchem.2313

By:

Jung, Cheulhee;
Ellington, Andrew D.

Publication type:

Article

Comparison of direct DNA strand break simulated with different DNA models.

Published in:

Radiation Protection Dosimetry, 2013, v. 156, n. 3, p. 283, doi. 10.1093/rpd/nct074

By:

Xie, Wenzhang;
Li, Junli;
Li, Chunyan;
Qiu, Rui;
Yan, Congchong;
Zeng, Zhi

Publication type:

Article

OnScreen DNA Model.

Published in:

2014

By:

Brown, Thomas

Publication type:

Product Review

The Position of DNA Cleavage by TALENs and Cell Synchronization Influences the Frequency of Gene Editing Directed by Single-Stranded Oligonucleotides.

Published in:

PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096483

By:

Rivera-Torres, Natalia;
Strouse, Bryan;
Bialk, Pawel;
Niamat, Rohina A.;
Kmiec, Eric B.

Publication type:

Article

Tepid showing for genomics X prize.

Published in:

Nature, 2013, v. 497, n. 7451, p. 546, doi. 10.1038/497546a

By:

Check Hayden, Erika

Publication type:

Article

Nicotinamide Suppresses the DNA Damage Sensitivity of Saccharomyces cerevisiae Independently of Sirtuin Deacetylases.

Published in:

Genetics, 2016, v. 204, n. 2, p. 569, doi. 10.1534/genetics.116.193524

By:

Rössl, Anthony;
Bentley-DeSousa, Amanda;
Yi-Chieh Tseng;
Nwosu, Christine;
Downey, Michael

Publication type:

Article

Coarse-grained simulation of DNA using LAMMPS.

Published in:

European Physical Journal E -- Soft Matter, 2018, v. 41, n. 5, p. 1, doi. 10.1140/epje/i2018-11669-8

By:

Henrich, Oliver;
Gutiérrez Fosado, Yair Augusto;
Curk, Tine;
Ouldridge, Thomas E.

Publication type:

Article

Charge transport in a DNA model with solvent interaction.

Published in:

Journal of Biological Physics, 2018, v. 44, n. 3, p. 483, doi. 10.1007/s10867-018-9503-x

By:

Ngoubi, H.;
Ben-Bolie, G. H.;
Kofané, T. C.

Publication type:

Article

Charge transport in DNA model with vibrational and rotational coupling motions.

Published in:

Journal of Biological Physics, 2017, v. 43, n. 3, p. 341, doi. 10.1007/s10867-017-9455-6

By:

Ngoubi, H.;
Ben-Bolie, G.;
Kofané, T.

Publication type:

Article

High-order nonlinear excitations in the Joyeux-Buyukdagli model of DNA.

Published in:

Journal of Biological Physics, 2016, v. 42, n. 2, p. 213, doi. 10.1007/s10867-015-9402-3

By:

Yao, Ying-Bo;
Wang, Xiao-Yun;
Tang, Bing

Publication type:

Article