Works matching DE "DNA insertion elements"

Results: 744

Comparative genomics of Acinetobacter baumannii from Egyptian healthcare settings reveals high-risk clones and resistance gene mobilization.

Published in:

BMC Infectious Diseases, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12879-025-11185-x

By:

Salem, Salma;
Osama, Dina;
Abdelsalam, Nehal Adel;
Shata, Ahmed H.;
Mouftah, Shaimaa F.;
Elhadidy, Mohamed

Publication type:

Article

Diversity of mobile genetic elements in carbapenem-resistant Enterobacterales isolated from the intensive care units of a tertiary care hospital in Northeast India.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1543427

By:

Mitra, Shravani;
Naha, Sharmi;
Chakraborty, Joy;
De, Subhadeep;
Kaur, Harpreet;
Majumdar, Tapan;
Basu, Sulagna

Publication type:

Article

Impact of the 294 bp SINE Insertion in 5′UTR of the GLYATL3 Gene on Gene Expression and Phenotypic Variation.

Published in:

Animals (2076-2615), 2025, v. 15, n. 10, p. 1375, doi. 10.3390/ani15101375

By:

Zhou, Chenyu;
Qiao, Suwei;
Zheng, Yao;
Yu, Miao;
Chen, Hong;
Chen, Cai;
Moawad, Ali Shoaib;
Gao, Bo;
Song, Chengyi;
Wang, Xiaoyan

Publication type:

Article

Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 7, p. 435, doi. 10.1038/nrmicro3033

By:

van Opijnen, Tim;
Camilli, Andrew

Publication type:

Article

Archaea: Hot spots for Sulfolobus.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 2, p. 98, doi. 10.1038/nrmicro1109

By:

Molloy, Sheilagh

Publication type:

Article

Case report of failed tubal occlusion using Essure™ pbc (permanent birth control) hysteroscopic sterilisation procedure.

Published in:

2006

By:

Karthigasu, Krishnan A.;
Garry, Ray;
Hart, Roger

Publication type:

Letter

Polymorphism of glutathione S‐transferase P1 of dogs with mammary tumours.

Published in:

Veterinary & Comparative Oncology, 2023, v. 21, n. 2, p. 270, doi. 10.1111/vco.12885

By:

Fedets, Oleh M.;
Dmytruk, Kostyantyn V.;
Adaszek, Lukasz;
Kurlyak, Iryna M.;
Dmytruk, Olena V.;
Lisiecka, Urszula;
Winiarczyk, Stanislaw

Publication type:

Article

De Novo Design of Selective Quadruplex–Duplex Junction Ligands and Structural Characterisation of Their Binding Mode: Targeting the G4 Hot‐Spot.

Published in:

Chemistry - A European Journal, 2021, v. 27, n. 20, p. 6204, doi. 10.1002/chem.202005026

By:

Díaz‐Casado, Laura;
Serrano‐Chacón, Israel;
Montalvillo‐Jiménez, Laura;
Corzana, Francisco;
Bastida, Agatha;
Santana, Andrés G.;
González, Carlos;
Asensio, Juan Luis

Publication type:

Article

Development of a specific molecular tool for the detection of epidemiologically active mulberry causing-disease strains of Ralstonia solanacearum phylotype I (historically race 5-biovar 5) in China.

Published in:

European Journal of Plant Pathology, 2013, v. 137, n. 2, p. 377, doi. 10.1007/s10658-013-0249-9

By:

Pan, Z.;
Xu, J.;
Prior, P.;
Zhang, H.;
Chen, K.;
Tian, Q.;
Zhang, L.;
Liu, L.;
He, L.;
Feng, J.

Publication type:

Article

Genetic diversity among Brenneria nigrifluens strains in Iran.

Published in:

European Journal of Plant Pathology, 2010, v. 128, n. 3, p. 303, doi. 10.1007/s10658-010-9667-0

By:

Falahi Charkhabi, Nargues;
Shams-bakhsh, Masoud;
Rahimian, Heshmat

Publication type:

Article

Chromosomal distribution of soybean retrotransposon SORE-1 suggests its recent preferential insertion into euchromatic regions.

Published in:

Chromosome Research, 2018, v. 26, n. 3, p. 199, doi. 10.1007/s10577-018-9579-y

By:

Nakashima, Kenta;
Abe, Jun;
Kanazawa, Akira

Publication type:

Article

Co-evolution between transposable elements and their hosts: a major factor in genome size evolution?

Published in:

Chromosome Research, 2011, v. 19, n. 6, p. 777, doi. 10.1007/s10577-011-9229-0

By:

Ågren, J.;
Wright, Stephen

Publication type:

Article

Estimating the fitness effect of an insertion sequence.

Published in:

Journal of Mathematical Biology, 2013, v. 66, n. 1/2, p. 95, doi. 10.1007/s00285-012-0504-2

By:

Bichsel, Manuel;
Barbour, A.;
Wagner, Andreas

Publication type:

Article

Population data of 30 insertion-deletion markers in four Chinese populations.

Published in:

International Journal of Legal Medicine, 2015, v. 129, n. 1, p. 53, doi. 10.1007/s00414-014-1091-0

By:

Shi, Meisen;
Liu, Yaju;
Bai, Rufeng;
Jiang, Lizhe;
Lv, Xiaojiao;
Ma, Shuhua

Publication type:

Article

Insertion-deletion polymorphisms-utilization on forensic analysis.

Published in:

International Journal of Legal Medicine, 2012, v. 126, n. 4, p. 491, doi. 10.1007/s00414-011-0588-z

By:

Costa Francez, Pablo;
Rodrigues, Elzemar;
Velasco, Afrânio;
Santos, Sidney

Publication type:

Article

X-linked insertion/deletion polymorphisms: forensic applications of a 33-markers panel.

Published in:

International Journal of Legal Medicine, 2010, v. 124, n. 6, p. 589, doi. 10.1007/s00414-010-0441-9

By:

Freitas, Natalle S. C.;
Resque, Rafael L.;
Ribeiro-Rodrigues, Elzemar M.;
Guerreiro, João F.;
Santos, Ney P. C.;
Ribeiro-dos-Santos, Ândrea;
Santos, Sidney

Publication type:

Article

In vivo Tn 5-based transposon mutagenesis of Streptomycetes.

Published in:

Applied Microbiology & Biotechnology, 2009, v. 83, n. 5, p. 979, doi. 10.1007/s00253-009-2047-z

By:

Petzke, Lutz;
Luzhetskyy, Andriy

Publication type:

Article

Insertion sequence-based cassette PCR: cultivation-independent isolation of γ-hexachlorocyclohexane-degrading genes from soil DNA.

Published in:

Applied Microbiology & Biotechnology, 2008, v. 79, n. 4, p. 627, doi. 10.1007/s00253-008-1463-9

By:

Fuchu, Genki;
Ohtsubo, Yoshiyuki;
Ito, Michihiro;
Miyazaki, Ryo;
Ono, Akira;
Nagata, Yuji;
Tsuda, Masataka

Publication type:

Article

ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3340, doi. 10.1093/bioinformatics/btx433

By:

Zhiqun Xie;
Haixu Tang

Publication type:

Article

Sprites: detection of deletions from sequencing data by re-aligning split reads.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. 1788, doi. 10.1093/bioinformatics/btw053

By:

Zhen Zhang;
Jianxin Wang;
Junwei Luo;
Xiaojun Ding;
Jiancheng Zhong;
Jun Wang;
Fang-Xiang Wu;
Yi Pan

Publication type:

Article

PopIns: population-scale detection of novel sequence insertions.

Published in:

Bioinformatics, 2016, v. 32, n. 7, p. 961, doi. 10.1093/bioinformatics/btv273

By:

Kehr, Birte;
Melsted, Paáll;
Halldórsson, Bjarni V.

Publication type:

Article

ISQuest: finding insertion sequences in prokaryotic sequence fragment data.

Published in:

Bioinformatics, 2015, v. 31, n. 21, p. 3406, doi. 10.1093/bioinformatics/btv388

By:

Biswas, Abhishek;
Gauthier, David T.;
Ranjan, Desh;
Zubair, Mohammad

Publication type:

Article

MindTheGap: integrated detection and assembly of short and long insertions.

Published in:

Bioinformatics, 2014, v. 30, n. 24, p. 3451, doi. 10.1093/bioinformatics/btu545

By:

Rizk, Guillaume;
Gouin, Anaïs;
Chikhi, Rayan;
Lemaitre, Claire

Publication type:

Article

A sequence comparison and gene expression data integration add-on for the Pathway Tools software.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2283, doi. 10.1093/bioinformatics/bts431

By:

Krempl, Peter M.;
Mairhofer, Juergen;
Striedner, Gerald;
Thallinger, Gerhard G.

Publication type:

Article

Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV.

Published in:

Bioinformatics, 2011, v. 27, n. 19, p. 2648, doi. 10.1093/bioinformatics/btr462

By:

Sathirapongsasuti, Jarupon Fah;
Lee, Hane;
Horst, Basil A. J.;
Brunner, Georg;
Cochran, Alistair J.;
Binder, Scott;
Quackenbush, John;
Nelson, Stanley F.

Publication type:

Article

The variant call format and VCFtools.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2156

By:

Danecek, Petr;
Auton, Adam;
Abecasis, Goncalo;
Albers, Cornelis A.;
Banks, Eric;
DePristo, Mark A.;
Handsaker, Robert E.;
Lunter, Gerton;
Marth, Gabor T.;
Sherry, Stephen T.;
McVean, Gilean;
Durbin, Richard

Publication type:

Article

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2865, doi. 10.1093/bioinformatics/btp394

By:

Kai Ye;
Schulz, Marcel H.;
Long, Quan;
Apweiler, Rolf;
Ning, Zemin

Publication type:

Article

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1451, doi. 10.1093/bioinformatics/btp187

By:

P. Librado;
J. Rozas

Publication type:

Article

GenomeVx: simple web-based creation of editable circular chromosome maps.

Published in:

Bioinformatics, 2008, v. 24, n. 6, p. 861, doi. 10.1093/bioinformatics/btm598

By:

Gavin C. Conant;
Kenneth H. Wolfe

Publication type:

Article

Coloring picture fuzzy graphs through their cuts and its computation.

Published in:

International Journal of Advances in Intelligent Informatics, 2021, v. 7, n. 1, p. 63, doi. 10.26555/ijain.v7i1.612

By:

Rosyida, Isnaini;
Suryono, Suryono

Publication type:

Article

Use of Recurrence Plots to Find Mutations in Deoxyribonucleic Acid Sequences.

Published in:

Complex Systems, 2023, v. 32, n. 1, p. 89, doi. 10.25088/ComplexSystems.32.1.89

By:

Rivas-Cisneros, D. E.

Publication type:

Article

Effect of Supplementation of Probiotic and their DNA alone or in Combination with Glyburide on Hyperglycemic Swiss Albino Mice.

Published in:

International Journal of Chemical & Pharmaceutical Analysis, 2015, v. 2, n. 2, p. 71

By:

Randhawa, Mansimran Kaur;
Bhatia, Aruna;
Balgir, Praveen Pal

Publication type:

Article

DNA Modification Patterns within the Transposable Elements of the Fig (Ficus carica L.) Genome.

Published in:

Plants (2223-7747), 2021, v. 10, n. 3, p. 451, doi. 10.3390/plants10030451

By:

Usai, Gabriele;
Vangelisti, Alberto;
Simoni, Samuel;
Giordani, Tommaso;
Natali, Lucia;
Cavallini, Andrea;
Mascagni, Flavia;
Albertini, Emidio

Publication type:

Article

Rice MULEs Transpose in Yeast.

Published in:

Plant Cell, 2015, v. 27, n. 1, p. 5, doi. 10.1105/tpc.114.136143

By:

Mach, Jennifer

Publication type:

Article

Repair of Site-Specific DNA Double-Strand Breaks in Barley Occurs via Diverse Pathways Primarily Involving the Sister Chromatid.

Published in:

Plant Cell, 2014, v. 26, n. 5, p. 2156, doi. 10.1105/tpc.114.126607

By:

Vu, Giang T.H.;
Cao, Hieu X.;
Watanabe, Koichi;
Hensel, Goetz;
Blattner, Frank R.;
Kumlehn, Jochen;
Schubert, Ingo

Publication type:

Article

High-Throughput Genotyping of Green Algal Mutants Reveals Random Distribution of Mutagenic Insertion Sites and Endonucleolytic Cleavage of Transforming DNA.

Published in:

Plant Cell, 2014, v. 26, n. 4, p. 1398, doi. 10.1105/tpc.114.124099

By:

Zhang, Ru;
Patena, Weronika;
Armbruster, Ute;
Gang, Spencer S.;
Blum, Sean R.;
Jonikas, Martin C.

Publication type:

Article

Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids.

Published in:

Plant Cell, 2012, v. 24, n. 3, p. 875, doi. 10.1105/tpc.111.094870

By:

Shen, Huaishun;
He, Hang;
Li, Jigang;
Chen, Wei;
Wang, Xuncheng;
Guo, Lan;
Peng, Zhiyu;
He, Guangming;
Zhong, Shangwei;
Qi, Yijun;
Terzaghi, William;
Deng, Xing Wang

Publication type:

Article

On Some Factorizations of Semi-Metric Cones and Quality Estimates of Heuristic Metrics in Data Analysis Problems.

Published in:

Doklady Mathematics, 2020, v. 101, n. 3, p. 257, doi. 10.1134/S1064562420030230

By:

Rudakov, K. V.

Publication type:

Article

GEN-SNiP: An Online Tool to Find Polymorphisms in a Genome.

Published in:

In Silico Biology, 2009, v. 9, n. 5/6, p. 333, doi. 10.3233/ISB-2009-0401

By:

Whyte, David B.;
Nair, Gopakumar Gopalakrishnan;
Nair, Achuthsankar S.;
Oommen, Oommen V.

Publication type:

Article

Human Retrotransposons and Effective Computational Detection Methods for Next-Generation Sequencing Data.

Published in:

Life (2075-1729), 2022, v. 12, n. 10, p. 1583, doi. 10.3390/life12101583

By:

Lee, Haeun;
Min, Jun Won;
Mun, Seyoung;
Han, Kyudong

Publication type:

Article

DNA Sequence Conservation and Diversity in Transposable Element IS605 ofHelicobacter pylori.

Published in:

Helicobacter, 1998, v. 3, n. 2, p. 79

By:

Höök-Nikanne, Johanna;
Berg, Douglas E.;
Peek, Richard M.;
Kersulyte, Dange;
Tummuru, Murali K. R.;
Blaser, Martin J.

Publication type:

Article

Toxic/Bioactive Peptide Synthesis Genes Rearranged by Insertion Sequence Elements Among the Bloom-Forming Cyanobacteria Planktothrix.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.901762

By:

Entfellner, Elisabeth;
Ruibao Li;
Yiming Jiang;
Jinlong Ru;
Blom, Jochen;
Li Deng;
Kurmayer, Rainer

Publication type:

Article

Comparative Genomic Analysis of the Lettuce Bacterial Leaf Spot Pathogen, Xanthomonas hortorum pv. vitians , to Investigate Race Specificity.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.840311

By:

Rosenthal, Emma;
Potnis, Neha;
Bull, Carolee T.

Publication type:

Article

Management of dysfunctional covered self-expandable metallic stents in patients with malignant distal biliary obstruction.

Published in:

Journal of Gastroenterology, 2013, v. 48, n. 11, p. 1300, doi. 10.1007/s00535-013-0751-z

By:

Togawa, Osamu;
Isayama, Hiroyuki;
Tsujino, Takeshi;
Nakai, Yousuke;
Kogure, Hirofumi;
Hamada, Tsuyoshi;
Sasaki, Takashi;
Yashima, Yoko;
Yagioka, Hiroshi;
Arizumi, Toshihiko;
Ito, Yukiko;
Matsubara, Saburo;
Yamamoto, Natsuyo;
Sasahira, Naoki;
Hirano, Kenji;
Toda, Nobuo;
Tada, Minoru;
Koike, Kazuhiko

Publication type:

Article

Oxacillinase-484–Producing Enterobacterales, France, 2018–2023.

Published in:

Emerging Infectious Diseases, 2024, v. 30, n. 10, p. 2178, doi. 10.3201/eid3010.240814

By:

Emeraud, Cécile;
Bernabeu, Sandrine;
Girlich, Delphine;
Rezzoug, Inès;
Jousset, Agnès B.;
Birer, Aurélien;
Naas, Thierry;
Bonnin, Rémy A.;
Dortet, Laurent

Publication type:

Article

Inter-Professional Education, Inter-Professional Practice and Team Science: Learning Together; Working Together.

Published in:

Education in Medicine Journal, 2018, v. 10, n. 4, p. 81, doi. 10.21315/eimj2018.10.4.8

By:

Lateef, Fatimah

Publication type:

Article

T-DNA alleles of the receptor kinase THESEUS1 with opposing effects on cell wall integrity signaling.

Published in:

Journal of Experimental Botany, 2017, v. 68, n. 16, p. 4583, doi. 10.1093/jxb/erx263

By:

Merz, David;
Richter, Julia;
Gonneau, Martine;
Sanchez-Rodriguez, Clara;
Eder, Tobias;
Sormani, Rodnay;
Martin, Marjolaine;
Hématy, Kian;
Höfte, Herman;
Hauser, Marie-Theres

Publication type:

Article

SINE Retrotransposon variation drives Ecotypic disparity in natural populations of Coilia nasus.

Published in:

Mobile DNA, 2020, v. 11, n. 1, p. 1, doi. 10.1186/s13100-019-0198-8

By:

Liu, Dong;
Yang, Jinquan;
Tang, Wenqiao;
Zhang, Xing;
Royster, Clay Matthew;
Zhang, Ming

Publication type:

Article

Alu insertion polymorphisms shared by Papio baboons and Theropithecus gelada reveal an intertwined common ancestry.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0187-y

By:

Walker, Jerilyn A.;
Jordan, Vallmer E.;
Storer, Jessica M.;
Steely, Cody J.;
Gonzalez-Quiroga, Paulina;
Beckstrom, Thomas O.;
Rewerts, Lydia C.;
St. Romain, Corey P.;
Rockwell, Catherine E.;
Rogers, Jeffrey;
Jolly, Clifford J.;
Konkel, Miriam K.;
The Baboon Genome Analysis Consortium;
Harris, R. Alan;
Raveendran, Muthuswamy;
Liu, Yue;
Murali, Shwetha;
Vilgalys, Tauras P.;
Thomas, Gregg W. C.;
Pagel, Kymberleigh A.

Publication type:

Article

Characterization of a functional insertion sequence ISSau2 from Staphylococcus aureus.

Published in:

Mobile DNA, 2018, v. 9, p. 1, doi. 10.1186/s13100-018-0108-5

By:

Wang, Liangliang;
Si, Wei;
Xue, Huping;
Zhao, Xin

Publication type:

Article