Works matching DE "DEHALOCOCCOIDES"

Results: 42

Complete genome sequencing of Dehalococcoides sp. strain UCH007 using a differential reads picking method.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0095-9

By:

Uchino, Yoshihito;
Miura, Takamasa;
Hosoyama, Akira;
Ohji, Shoko;
Yamazoe, Atsushi;
Ito, Masako;
Takahata, Yoh;
Suzuki, Ken-ichiro;
Fujita, Nobuyuki

Publication type:

Article

Experimental validation of in silico model-predicted isocitrate dehydrogenase and phosphomannose isomerase from D ehalococcoides mccartyi.

Published in:

Microbial Biotechnology, 2016, v. 9, n. 1, p. 47, doi. 10.1111/1751-7915.12315

By:

Islam, M. Ahsanul;
Tchigvintsev, Anatoli;
Yim, Veronica;
Savchenko, Alexei;
Yakunin, Alexander F.;
Mahadevan, Radhakrishnan;
Edwards, Elizabeth A.

Publication type:

Article

Maths on microbes: adding microbial ecophysiology to metagenomics.

Published in:

Microbial Biotechnology, 2015, v. 8, n. 1, p. 21, doi. 10.1111/1751-7915.12233

By:

Röling, Wilfred F. M.

Publication type:

Article

In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes.

Published in:

Microbial Biotechnology, 2012, v. 5, n. 5, p. 642, doi. 10.1111/j.1751-7915.2012.00339.x

By:

Dugat-Bony, Eric;
Biderre-Petit, Corinne;
Jaziri, Faouzi;
David, Maude M.;
Denonfoux, Jérémie;
Lyon, Delina Y.;
Richard, Jean-Yves;
Curvers, Cyrille;
Boucher, Delphine;
Vogel, Timothy M.;
Peyretaillade, Eric;
Peyret, Pierre

Publication type:

Article

Role of bicarbonate as a pH buffer and electron sink in microbial dechlorination of chloroethenes.

Published in:

Microbial Cell Factories, 2012, v. 11, n. 1, p. 128, doi. 10.1186/1475-2859-11-128

By:

Delgado, Anca G.;
Parameswaran, Prathap;
Fajardo-Williams, Devyn;
Halden, Rolf U.;
Krajmalnik-Brown, Rosa

Publication type:

Article

Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 327, doi. 10.1186/1471-2164-13-327

By:

Hug, Laura A.;
Beiko, Robert G.;
Rowe, Annette R.;
Richardson, Ruth E.;
Edwards, Elizabeth A.

Publication type:

Article

Dehalococcoides and general bacterial ecology of differentially trichloroethene dechlorinating flow-through columns.

Published in:

Applied Microbiology & Biotechnology, 2017, v. 101, n. 11, p. 4799, doi. 10.1007/s00253-017-8180-1

By:

Mirza, Babur;
Sorensen, Darwin;
McGlinn, Daniel;
Dupont, R.;
McLean, Joan

Publication type:

Article

Development and application of a rapid, user-friendly, and inexpensive method to detect Dehalococcoides sp. reductive dehalogenase genes from groundwater.

Published in:

Applied Microbiology & Biotechnology, 2017, v. 101, n. 11, p. 4827, doi. 10.1007/s00253-017-8203-y

By:

Kanitkar, Yogendra;
Stedtfeld, Robert;
Hatzinger, Paul;
Hashsham, Syed;
Cupples, Alison

Publication type:

Article

Relating mRNA and protein biomarker levels in a Dehalococcoides and Methanospirillum-containing community.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 5, p. 2313, doi. 10.1007/s00253-014-6220-7

By:

Rowe, Annette;
Mansfeldt, Cresten;
Heavner, Gretchen;
Richardson, Ruth

Publication type:

Article

Successful operation of continuous reactors at short retention times results in high-density, fast-rate Dehalococcoides dechlorinating cultures.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 6, p. 2729, doi. 10.1007/s00253-013-5263-5

By:

Delgado, Anca;
Fajardo-Williams, Devyn;
Popat, Sudeep;
Torres, César;
Krajmalnik-Brown, Rosa

Publication type:

Article

Evaluation of solid polymeric organic materials for use in bioreactive sediment capping to stimulate the degradation of chlorinated aliphatic hydrocarbons.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 5, p. 2255, doi. 10.1007/s00253-013-5138-9

By:

Atashgahi, Siavash;
Maphosa, Farai;
Vrieze, Jo;
Haest, Pieter;
Boon, Nico;
Smidt, Hauke;
Springael, Dirk;
Dejonghe, Winnie

Publication type:

Article

Inferring Gene Networks for Strains of Dehalococcoides Highlights Conserved Relationships between Genes Encoding Core Catabolic and Cell-Wall Structural Proteins.

Published in:

PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0166234

By:

Mansfeldt, Cresten B.;
Heavner, Gretchen W.;
Rowe, Annette R.;
Hayete, Boris;
Church, Bruce W.;
Richardson, Ruth E.

Publication type:

Article

Single cell genomic study of Dehalococcoidetes species from deep-sea sediments of the Peruvian Margin.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 9, p. 1831, doi. 10.1038/ismej.2014.24

By:

Kaster, Anne-Kristin;
Mayer-Blackwell, Koshlan;
Pasarelli, Ben;
Spormann, Alfred M

Publication type:

Article

Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 2, p. 383, doi. 10.1038/ismej.2013.143

By:

Wasmund, Kenneth;
Schreiber, Lars;
Lloyd, Karen G;
Petersen, Dorthe G;
Schramm, Andreas;
Stepanauskas, Ramunas;
Jørgensen, Bo Barker;
Adrian, Lorenz

Publication type:

Article

Metagenomic analysis of a stable trichloroethene-degrading microbial community.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 9, p. 1702, doi. 10.1038/ismej.2012.15

By:

Brisson, Vanessa L;
West, Kimberlee A;
Lee, Patrick KH;
Tringe, Susannah G;
Brodie, Eoin L;
Alvarez-Cohen, Lisa

Publication type:

Article

A Long-Term Field Study of In Situ Bioremediation in a Fractured Conglomerate Trichloroethene Source Zone.

Published in:

Bioremediation Journal, 2015, v. 19, n. 1, p. 18, doi. 10.1080/10889868.2014.978836

By:

Verce, Matthew F.;
Madrid, Victor M.;
Gregory, Steven D.;
Demir, Zafer;
Singleton, Michael J.;
Salazar, Edmund P.;
Jackson, Paul J.;
Halden, Rolf U.;
Verce, Anja

Publication type:

Article

A H2-oxidizing, 1,2,3-trichlorobenzene-reducing multienzyme complex isolated from the obligately organohalide-respiring bacterium Dehalococcoides mccartyi strain CBDB1.

Published in:

Environmental Microbiology Reports, 2017, v. 9, n. 5, p. 618, doi. 10.1111/1758-2229.12560

By:

Hartwig, Stefanie;
Dragomirova, Nadya;
Kublik, Anja;
Türkowsky, Dominique;
von Bergen, Martin;
Lechner, Ute;
Adrian, Lorenz;
Sawers, R. Gary

Publication type:

Article

Diastereoisomer-Specific Biotransformation of Hexabromocyclododecanes by a Mixed Culture Containing Dehalococcoides mccartyi Strain 195.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01713

By:

Zhong, Yin;
Wang, Heli;
Yu, Zhiqiang;
Geng, Xinhua;
Chen, Chengyu;
Li, Dan;
Zhu, Xifen;
Zhen, Huajun;
Huang, Weilin;
Fennell, Donna E.;
Young, Lily Y.;
Peng, Ping’an

Publication type:

Article

The Complexome of Dehalococcoides mccartyi Reveals Its Organohalide Respiration-Complex Is Modular.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.01130

By:

Seidel, Katja;
Kühnert, Joana;
Adrian, Lorenz

Publication type:

Article

Chlorinated Electron Acceptor Abundance Drives Selection of Dehalococcoides mccartyi (D. mccartyi) Strains in Dechlorinating Enrichment Cultures and Groundwater Environments.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00812

By:

Pérez-de-Mora, Alfredo;
Lacourt, Anna;
McMaster, Michaye L.;
Xiaoming Liang;
Dworatzek, Sandra M.;
Edwards, Elizabeth A.

Publication type:

Article

Dehalococcoides as a Potential Biomarker Evidence for Uncharacterized Organohalides in Environmental Samples.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01677

By:

Qihong Lu;
Ling Yu;
Zhiwei Liang;
Qingyun Yan;
Zhili He;
Tiangang Luan;
Dawei Liang;
Shanquan Wang

Publication type:

Article

Biostimulation and Bioaugmentation to Enhance Reductive Dechlorination of TCE in a Long-Term Flow Through Column Study.

Published in:

Ground Water Monitoring & Remediation, 2015, v. 35, n. 3, p. 76, doi. 10.1111/gwmr.12113

By:

McLean, Joan E.;
Ervin, Jared;
Jing Zhou;
Sorensen, Darwin L.;
Dupont, R. Ryan

Publication type:

Article

Performance of Full-Scale Enhanced Reductive Dechlorination in Clay Till.

Published in:

Ground Water Monitoring & Remediation, 2013, v. 33, n. 1, p. 48, doi. 10.1111/j.1745-6592.2012.01405.x

By:

Damgaard, Ida;
Bjerg, Poul L.;
Jacobsen, Carsten S;
Tsitonaki, Aikaterini;
Kerrn‐Jespersen, Henriette;
Broholm, Mette M.

Publication type:

Article

Modeling Dehalococcoides sp. Augmented Bioremediation in a Single Fracture System.

Published in:

Ground Water Monitoring & Remediation, 2012, v. 32, n. 3, p. 75, doi. 10.1111/j.1745-6592.2011.01392.x

By:

Torlapati, Jagadish;
Clement, T. Prabhakar;
Schaefer, Charles E.;
Lee, Kang-Kun

Publication type:

Article

PCE dechlorination by non- Dehalococcoides in a microbial electrochemical system.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2016, v. 43, n. 8, p. 1095, doi. 10.1007/s10295-016-1791-1

By:

Yu, Jaecheul;
Park, Younghyun;
Nguyen, Van;
Lee, Taeho

Publication type:

Article

Predominance of Dehalococcoides in the presence of different sulfate concentrations.

Published in:

Water, Air & Soil Pollution, 2014, v. 225, n. 1, p. 1, doi. 10.1007/s11270-013-1785-9

By:

Panagiotakis, Iraklis;
Mamais, Daniel;
Pantazidou, Marina;
Rossetti, Simona;
Aulenta, Federico;
Tandoi, Valter

Publication type:

Article

Occurrence of Dehalococcoides and Reductive Dehalogenase Genes in Microcosms, a Constructed Wetland and Groundwater from a Chlorinated Ethene Contaminated Field Site as Indicators for In Situ Reductive Dehalogenation.

Published in:

Water, Air & Soil Pollution, 2013, v. 224, n. 11, p. 1, doi. 10.1007/s11270-013-1768-x

By:

Mészáros, Éva;
Imfeld, Gwenaël;
Nikolausz, Marcell;
Nijenhuis, Ivonne

Publication type:

Article

A comparative genomics and reductive dehalogenase gene transcription study of two chloroethene-respiring bacteria, Dehalococcoides mccartyi strains MB and 11a.

Published in:

Scientific Reports, 2015, p. 15204, doi. 10.1038/srep15204

By:

Low, Adrian;
Shen, Zhiyong;
Cheng, Dan;
Rogers, Matthew J.;
Lee, Patrick K. H.;
He, Jianzhong

Publication type:

Article

SPINE: SParse eIgengene NEtwork Linking Gene Expression Clusters in Dehalococcoides mccartyi to Perturbations in Experimental Conditions.

Published in:

PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0118404

By:

Mansfeldt, Cresten B.;
Logsdon, Benjamin A.;
Debs, Garrett E.;
Richardson, Ruth E.

Publication type:

Article

Selective Enrichment Yields Robust Ethene-Producing Dechlorinating Cultures from Microcosms Stalled at cis-Dichloroethene.

Published in:

PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0100654

By:

Delgado, Anca G.;
Kang, Dae-Wook;
Nelson, Katherine G.;
Fajardo-Williams, Devyn;
Miceli III, Joseph F.;
Done, Hansa Y.;
Popat, Sudeep C.;
Krajmalnik-Brown, Rosa

Publication type:

Article

New Insights into Dehalococcoides mccartyi Metabolism from a Reconstructed Metabolic Network-Based Systems-Level Analysis of D. mccartyi Transcriptomes.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094808

By:

Islam, M. Ahsanul;
Waller, Alison S.;
Hug, Laura A.;
Provart, Nicholas J.;
Edwards, Elizabeth A.;
Mahadevan, Radhakrishnan

Publication type:

Article

Polychlorinated biphenyl (PCB) anaerobic degradation in marine sediments: microcosm study and role of autochthonous microbial communities.

Published in:

Environmental Science & Pollution Research, 2016, v. 23, n. 13, p. 12613, doi. 10.1007/s11356-015-4960-2

By:

Matturro, Bruna;
Ubaldi, Carla;
Grenni, Paola;
Caracciolo, Anna;
Rossetti, Simona

Publication type:

Article

PCBs attenuation and abundance of Dehalococcoides spp., bphC, CheA, and flic genes in typical polychlorinated biphenyl-polluted soil under floody and dry soil conditions.

Published in:

Environmental Science & Pollution Research, 2016, v. 23, n. 4, p. 3907, doi. 10.1007/s11356-015-5577-1

By:

Hashmi, Muhammad;
Qin, Zhihui;
Yao, Xiaoyan;
Ahmed, Zulkifl;
Xiaomei, Su;
Shen, Chaofeng;
Tang, Xianjin

Publication type:

Article

Chloroethene degradation and expression of Dehalococcoides dehalogenase genes in cultures originating from Yangtze sediments.

Published in:

Environmental Science & Pollution Research, 2015, v. 22, n. 4, p. 3138, doi. 10.1007/s11356-014-3574-4

By:

Kranzioch, Irene;
Ganz, Selina;
Tiehm, Andreas

Publication type:

Article

Dechlorination and organohalide-respiring bacteria dynamics in sediment samples of the Yangtze Three Gorges Reservoir.

Published in:

Environmental Science & Pollution Research, 2013, v. 20, n. 10, p. 7046, doi. 10.1007/s11356-013-1545-9

By:

Kranzioch, Irene;
Stoll, Claudia;
Holbach, Andreas;
Chen, Hao;
Wang, Lijing;
Zheng, Binghui;
Norra, Stefan;
Bi, Yonghong;
Schramm, Karl-Werner;
Tiehm, Andreas

Publication type:

Article

Modelling Microbial Dechlorination of Trichloroethene: Investigating the Trade-off Between Quality of Fit and Parameter Reliability.

Published in:

Bulletin of Environmental Contamination & Toxicology, 2015, v. 94, n. 3, p. 295, doi. 10.1007/s00128-014-1436-x

By:

Kandris, K.;
Antoniou, K.;
Pantazidou, M.;
Mamais, D.

Publication type:

Article

Effects of Different Electron Donor Feeding Patterns on TCE Reductive Dechlorination Performance.

Published in:

Bulletin of Environmental Contamination & Toxicology, 2015, v. 94, n. 3, p. 289, doi. 10.1007/s00128-015-1462-3

By:

Panagiotakis, I.;
Antoniou, K.;
Mamais, D.;
Pantazidou, M.

Publication type:

Article

Growth of Dehalococcoides mccartyi species in an autotrophic consortium producing limited acetate.

Published in:

Biodegradation, 2018, v. 29, n. 5, p. 487, doi. 10.1007/s10532-018-9846-9

By:

Ding, Chang;
Alvarez-Cohen, Lisa;
He, Jianzhong

Publication type:

Article

Anaerobic biotransformation of hexachlorocyclohexane isomers by Dehalococcoides species and an enrichment culture.

Published in:

Biodegradation, 2018, v. 29, n. 4, p. 409, doi. 10.1007/s10532-018-9838-9

By:

Bashir, Safdar;
Kuntze, Kevin;
Vogt, Carsten;
Nijenhuis, Ivonne

Publication type:

Article

Reassessment of PCR primers targeting 16S rRNA genes of the organohalide-respiring genus Dehalogenimonas.

Published in:

Biodegradation, 2014, v. 25, n. 5, p. 747, doi. 10.1007/s10532-014-9696-z

By:

Chen, Jie;
Bowman, Kimberly;
Rainey, Fred;
Moe, William

Publication type:

Article

Diversity of dechlorination pathways and organohalide respiring bacteria in chlorobenzene dechlorinating enrichment cultures originating from river sludge.

Published in:

Biodegradation, 2014, v. 25, n. 5, p. 757, doi. 10.1007/s10532-014-9697-y

By:

Vandermeeren, Pieter;
Herrmann, Steffi;
Cichocka, Danuta;
Busschaert, Pieter;
Lievens, Bart;
Richnow, Hans-Hermann;
Springael, Dirk

Publication type:

Article

Soil composition at the aquifer level, groundwater quality and the presence of Dehalococcoides ethenogenes at Dover AFB.

Published in:

Environmental Earth Sciences, 2014, v. 71, n. 9, p. 4157, doi. 10.1007/s12665-013-2806-0

By:

Demarest, LeRoy

Publication type:

Article