Works matching DE "CYTOSINE"

Results: 1086

PlantDeepMeth: A Deep Learning Model for Predicting DNA Methylation States in Plants.

Published in:

Plants (2223-7747), 2025, v. 14, n. 11, p. 1724, doi. 10.3390/plants14111724

By:

Guo, Zhongwei;
Fan, Wenyuan;
Cai, Chengcheng;
Zhang, Kang;
Hou, Xilin;
Li, Ying;
Cheng, Feng

Publication type:

Article

Studies upon Fluorescent Modulation of Silver Nanoclusters Formed on Bifunctional DNA Template.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4914, doi. 10.3390/ijms26104914

By:

Filipczuk, Patrycja;
Fedoruk-Wyszomirska, Agnieszka;
Nowak-Karnowska, Joanna;
Pietralik-Molińska, Zuzanna;
Banachowicz, Ewa;
Kozak, Maciej;
Dembska, Anna

Publication type:

Article

Charting oxidized methylcytosines at base resolution.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 9, p. 656, doi. 10.1038/nsmb.3071

By:

Yardimci, Hasan;
Zhang, Yi

Publication type:

Article

5-Formylcytosine alters the structure of the DNA double helix.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 1, p. 44, doi. 10.1038/nsmb.2936

By:

Raiber, Eun-Ang;
Murat, Pierre;
Chirgadze, Dimitri Y;
Beraldi, Dario;
Luisi, Ben F;
Balasubramanian, Shankar

Publication type:

Article

Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 1, p. 64, doi. 10.1038/nsmb.2735

By:

Stroud, Hume;
Do, Truman;
Du, Jiamu;
Zhong, Xuehua;
Feng, Suhua;
Johnson, Lianna;
Patel, Dinshaw J;
Jacobsen, Steven E

Publication type:

Article

RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 9, p. 900, doi. 10.1038/nsmb.2357

By:

Tuorto, Francesca;
Liebers, Reinhard;
Musch, Tanja;
Schaefer, Matthias;
Hofmann, Sarah;
Kellner, Stefanie;
Frye, Michaela;
Helm, Mark;
Stoecklin, Georg;
Lyko, Frank

Publication type:

Article

5-formylcytosine and 5-carboxylcytosine reduce the rate and substrate specificity of RNA polymerase II transcription.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 8, p. 831, doi. 10.1038/nsmb.2346

By:

Kellinger, Matthew W;
Song, Chun-Xiao;
Chong, Jenny;
Lu, Xing-Yu;
He, Chuan;
Wang, Dong

Publication type:

Article

Therapeutic potential of the cytosine deaminase::uracil phosphoribosyl transferase/5‐fluorocytosine suicide system for canine melanoma.

Published in:

Veterinary & Comparative Oncology, 2022, v. 20, n. 2, p. 372, doi. 10.1111/vco.12780

By:

Allende, Jesica B.;
Finocchiaro, Liliana M. E.;
Glikin, Gerardo C.

Publication type:

Article

Long interspersed nucleotide element‐1 hypomethylation in canine malignant mucosal melanoma.

Published in:

Veterinary & Comparative Oncology, 2020, v. 18, n. 4, p. 854, doi. 10.1111/vco.12591

By:

Ishizaki, Teita;
Yamazaki, Jumpei;
Meagawa, Shinji;
Yokoyama, Nozomu;
Aoshima, Keisuke;
Takiguchi, Mitsuyoshi;
Kimura, Takashi

Publication type:

Article

The Full Cytosine‐Cytosine Base Paring: Self‐Assembly and Crystal Structure.

Published in:

Chemistry - A European Journal, 2023, v. 29, n. 24, p. 1, doi. 10.1002/chem.202203979

By:

Li, Zhongkui;
Song, Wenjing;
Zhu, Yanhong;
Yan, Li;
Zhong, Xue;
Zhang, Menglei;
Li, Hui

Publication type:

Article

Stabilization of the Triplet Biradical Intermediate of 5‐Methylcytosine Enhances Cyclobutane Pyrimidine Dimer (CPD) Formation in DNA.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 62, p. 14181, doi. 10.1002/chem.202002834

By:

Lee, Wook;
Matsika, Spiridoula

Publication type:

Article

Heterochiral DNA with Complementary Strands with α‐d and β‐d Configurations: Hydrogen‐Bonded and Silver‐Mediated Base Pairs with Impact of 7‐Deazapurines Replacing Purines.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 61, p. 13973, doi. 10.1002/chem.202002765

By:

Chai, Yingying;
Guo, Xiurong;
Leonard, Peter;
Seela, Frank

Publication type:

Article

1,8‐Dimercuri‐6‐Phenyl‐1H‐Carbazole as a Monofacial Dinuclear Organometallic Nucleobase.

Published in:

Chemistry - A European Journal, 2020, v. 26, n. 10, p. 2164, doi. 10.1002/chem.201905434

By:

Ukale, Dattatraya Uttam;
Tähtinen, Petri;
Lönnberg, Tuomas

Publication type:

Article

Repair of a Dimeric Azetidine Related to the Thymine-Cytosine (6 -4) Photoproduct by Electron Transfer Photoreduction.

Published in:

Angewandte Chemie, 2016, v. 128, n. 20, p. 6141, doi. 10.1002/ange.201601475

By:

Fraga ‐ Timiraos, Ana B.;
Lhiaubet ‐ Vallet, Virginie;
Miranda, Miguel A.

Publication type:

Article

Microhydration Effects on the Ultrafast Photodynamics of Cytosine: Evidences for a Possible Hydration-Site Dependence.

Published in:

Angewandte Chemie, 2015, v. 127, n. 49, p. 14985, doi. 10.1002/ange.201507524

By:

Ho, Jr ‐ Wei;
Yen, Hung ‐ Chien;
Shi, Hui ‐ Qi;
Cheng, Li ‐ Hao;
Weng, Chih ‐ Nan;
Chou, Wei ‐ Kuang;
Chiu, Chih ‐ Chung;
Cheng, Po ‐ Yuan

Publication type:

Article

Ultrasensitive Direct Quantification of Nucleobase Modifications in DNA by Surface-Enhanced Raman Scattering: The Case of Cytosine.

Published in:

Angewandte Chemie, 2015, v. 127, n. 46, p. 13854, doi. 10.1002/ange.201507682

By:

Morla ‐ Folch, Judit;
Xie, Hai ‐ nan;
Gisbert ‐ Quilis, Patricia;
Pedro, Sara Gómez ‐ de;
Pazos ‐ Perez, Nicolas;
Alvarez ‐ Puebla, Ramon A.;
Guerrini, Luca

Publication type:

Article

7-Aryl-7-deazaadenine 2′-Deoxyribonucleoside Triphosphates (dNTPs): Better Substrates for DNA Polymerases than dATP in Competitive Incorporations.

Published in:

Angewandte Chemie, 2014, v. 126, n. 29, p. 7682, doi. 10.1002/ange.201404742

By:

Kielkowski, Pavel;
Fanfrlík, Jindřich;
Hocek, Michal

Publication type:

Article

Regulated Incorporation of Two Different Metal Ions into Programmed Sites in a Duplex by DNA Polymerase Catalyzed Primer Extension.

Published in:

Angewandte Chemie, 2014, v. 126, n. 26, p. 6742, doi. 10.1002/ange.201311235

By:

Funai, Tatsuya;
Nakamura, Junko;
Miyazaki, Yuki;
Kiriu, Risa;
Nakagawa, Osamu;
Wada, Shun-ichi;
Ono, Akira;
Urata, Hidehito

Publication type:

Article

Programmierbare und hochaufgelöste In-vitro-Detektion von genomischem 5-Methylcytosin durch TALEs.

Published in:

Angewandte Chemie, 2014, v. 126, n. 23, p. 6113, doi. 10.1002/ange.201400436

By:

Kubik, Grzegorz;
Schmidt, Moritz J.;
Penner, Johanna E.;
Summerer, Daniel

Publication type:

Article

Influence of the Absolute Configuration of NPE-Caged Cytosine on DNA Single Base Pair Stability.

Published in:

Angewandte Chemie, 2014, v. 126, n. 4, p. 1090, doi. 10.1002/ange.201307852

By:

Steinert, Hannah S.;
Schäfer, Florian;
Jonker, Hendrik R. A.;
Heckel, Alexander;
Schwalbe, Harald

Publication type:

Article

Evolutionary mechanism and biological functions of 8-mers containing CG dinucleotide in yeast.

Published in:

Chromosome Research, 2017, v. 25, n. 2, p. 173, doi. 10.1007/s10577-017-9554-z

By:

Zheng, Yan;
Li, Hong;
Wang, Yue;
Meng, Hu;
Zhang, Qiang;
Zhao, Xiaoqing

Publication type:

Article

Association of modified cytosines and the methylated DNA-binding protein MeCP2 with distinctive structural domains of lampbrush chromatin.

Published in:

Chromosome Research, 2012, v. 20, n. 8, p. 925, doi. 10.1007/s10577-012-9324-x

By:

Morgan, Garry;
Jones, Peter;
Bellini, Michel

Publication type:

Article

Simultaneous determination of guanine, adenine, thymine and cytosine with a simple electrochemical method.

Published in:

Journal of Solid State Electrochemistry, 2016, v. 20, n. 8, p. 2223, doi. 10.1007/s10008-016-3227-2

By:

Li, Hongying;
Wang, Xueliang;
Wang, Zhaoxia;
Zhao, Wei

Publication type:

Article

In silico structural modeling of multiple epigenetic marks on DNA.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 41, doi. 10.1093/bioinformatics/btx516

By:

Krawczyk, Konrad;
Demharter, Samuel;
Knapp, Bernhard;
Deane, Charlotte M;
Minary, Peter

Publication type:

Article

P3BSseq: parallel processing pipeline software for automatic analysis of bisulfite sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 428, doi. 10.1093/bioinformatics/btw633

By:

Luu, Phuc-Loi;
Gerovska, Daniela;
Arrospide-Elgarresta, Mikel;
Retegi-Carrión, Sugoi;
Schöler, Hans R.;
Araúzo-Bravo, Marcos J.

Publication type:

Article

OxyBS: estimation of 5-methylcytosine and 5-hydroxymethylcytosine from tandem-treated oxidative bisulfite and bisulfite DNA.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2505, doi. 10.1093/bioinformatics/btw158

By:

Houseman, E. Andres;
Johnson, Kevin C.;
Christensen, Brock C.

Publication type:

Article

meRanTK: methylated RNA analysis ToolKit.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 782, doi. 10.1093/bioinformatics/btv647

By:

Rieder, Dietmar;
Amort, Thomas;
Kugler, Elisabeth;
Lusser, Alexandra;
Trajanoski, Zlatko

Publication type:

Article

A trimming-and-retrieving alignment scheme for reduced representation bisulfite sequencing.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. 2040, doi. 10.1093/bioinformatics/btv089

By:

Xuefeng Wang;
Xiaoqing Yu;
Wei Zhu;
McCombie, W. Richard;
Antoniou, Eric;
Powers, R. Scott;
Davidson, Nicholas O.;
Li, Ellen;
Williams, Jennie

Publication type:

Article

Analysis of nanopore data using hidden Markov models.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. 1897, doi. 10.1093/bioinformatics/btv046

By:

Schreiber, Jacob;
Karplus, Kevin

Publication type:

Article

A cautionary note on using binary calls for analysis of DNA methylation.

Published in:

Bioinformatics, 2015, v. 31, n. 9, p. 1519, doi. 10.1093/bioinformatics/btv090

By:

Prochenka, Agnieszka;
Pokarowski, Piotr;
Gasperowicz, Piotr;
Kosińska, Joanna;
Stawiński, Piotr;
Zbieć-Piekarska, Renata;
Spólnicka, Magdalena;
Branicki, Wojciech;
Płoski, Rafał

Publication type:

Article

Multiscale DNA partitioning: statistical evidence for segments.

Published in:

Bioinformatics, 2014, v. 30, n. 16, p. 2255, doi. 10.1093/bioinformatics/btu180

By:

Futschik, Andreas;
Hotz, Thomas;
Munk, Axel;
Sieling, Hannes

Publication type:

Article

MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays.

Published in:

Bioinformatics, 2012, v. 28, n. 22, p. 2930, doi. 10.1093/bioinformatics/bts562

By:

Seifert, Michael;
Cortijo, Sandra;
Colomé-Tatché, Maria;
Johannes, Frank;
Roudier, François;
Colot, Vincent

Publication type:

Article

Fast and sensitive mapping of bisulfite-treated sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 13, p. 1698, doi. 10.1093/bioinformatics/bts254

By:

Otto, Christian;
Stadler, Peter F.;
Hoffmann, Steve

Publication type:

Article

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads.

Published in:

Bioinformatics, 2012, v. 28, n. 13, p. 1795, doi. 10.1093/bioinformatics/bts264

By:

Harris, Elena Y.;
Ponts, Nadia;
Le Roch, Karine G.;
Lonardi, Stefano

Publication type:

Article

CONTRA: copy number analysis for targeted resequencing.

Published in:

Bioinformatics, 2012, v. 28, n. 10, p. 1307, doi. 10.1093/bioinformatics/bts146

By:

Li, Jason;
Lupat, Richard;
Amarasinghe, Kaushalya C.;
Thompson, Ella R.;
Doyle, Maria A.;
Ryland, Georgina L.;
Tothill, Richard W.;
Halgamuge, Saman K.;
Campbell, Ian G.;
Gorringe, Kylie L.

Publication type:

Article

Psychosis and its Linear Outcomes: Huntington's Disease.

Published in:

Annals of Indian Psychiatry, 2023, v. 7, n. 2, p. 170, doi. 10.4103/aip.aip_195_22

By:

Gupta, Dimple;
Bhardwaj, Akansha;
Ankur, Abhinav;
Ambaliya, Chirag

Publication type:

Article

Integrative multi-omic analysis identifies genetically influenced DNA methylation biomarkers for breast and prostate cancers.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03540-4

By:

Sathyanarayanan, Anita;
Tanha, Hamzeh M.;
Mehta, Divya;
Nyholt, Dale R.

Publication type:

Article

Engineered Campylobacter jejuni Cas9 variant with enhanced activity and broader targeting range.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03149-7

By:

Nakagawa, Ryoya;
Ishiguro, Soh;
Okazaki, Sae;
Mori, Hideto;
Tanaka, Mamoru;
Aburatani, Hiroyuki;
Yachie, Nozomu;
Nishimasu, Hiroshi;
Nureki, Osamu

Publication type:

Article

Cytosine and adenine deaminase base-editors induce broad and nonspecific changes in gene expression and splicing.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02406-5

By:

Fan, Jiao;
Ding, Yige;
Ren, Chao;
Song, Ziguo;
Yuan, Jie;
Chen, Qiuzhen;
Du, Chenchen;
Li, Chao;
Wang, Xiaolong;
Shu, Wenjie

Publication type:

Article

不同产地地参核苷类成分的UPLC-MS-MS 定性定量分析.

Published in:

Food Research & Development, 2022, v. 43, n. 17, p. 160, doi. 10.12161/j.issn.1005-6521.2022.17.022

By:

黄小兰;
何旭峰;
周祥德;
赵顺鑫;
杨勤;
肖琦;
周浓

Publication type:

Article

STUDYING THE EVOLUTION OF NUCLEOBASES IN MARS-LIKE CONDITIONS: IMPACTS OF PERCHLORATES ON URACIL AND CYTOSINE UNDER ULTRA-VIOLET IRRADIATION.

Published in:

LPI Contribution, 2019, p. 1

By:

CHAOUCHE-MECHIDAL, N.;
STALPORT, F.;
COTTIN, H.;
AUDOUX, T.;
ROUQUETTE, L.;
LASNE, J.;
SZOPA, C.;
COLL, P.

Publication type:

Article

Oil Palm Fruits Ripeness Classification Based on the Characteristics of Protein, Lipid, Carotene, and Guanine/Cytosine from the Raman Spectra.

Published in:

Plants (2223-7747), 2022, v. 11, n. 15, p. 1936, doi. 10.3390/plants11151936

By:

Tzuan, Gabriel Tan Hong;
Hashim, Fazida Hanim;
Raj, Thinal;
Baseri Huddin, Aqilah;
Sajab, Mohd Shaiful

Publication type:

Article

利用胞嘧啶碱基编辑器高效制备奶牛 BLG 基因敲除胚胎的研究.

Published in:

Journal of Nanjing Agricultural University / Nanjuing Nongye Daxue Xuebao, 2024, v. 47, n. 6, p. 1159, doi. 10.7685/jnau.202309010

By:

丁修虎;
丁强;
王悦;
夏淑雯;
赵芳;
陈坤琳;
吴家顺;
何南;
仲跻峰;
王慧利;
李惠侠

Publication type:

Article

Which factors shape the rice DNA methylome?

Published in:

Plant Cell, 2021, v. 33, n. 9, p. 2904, doi. 10.1093/plcell/koab171

By:

Bischof, Sylvain

Publication type:

Article

Redistribution of CHH Methylation and Small Interfering RNAs across the Genome of Tomato ddm1 Mutants.

Published in:

Plant Cell, 2018, v. 30, n. 7, p. 1628, doi. 10.1105/tpc.18.00167

By:

Corem, Shira;
Doron-Faigenboim, Adi;
Jouffroy, Ophélie;
Maumus, Florian;
Arazi, Tzahi;
Bouché, Nicolas

Publication type:

Article

DNA Crossover Motifs Associated with Epigenetic Modifications Delineate Open Chromatin Regions in Arabidopsis.

Published in:

Plant Cell, 2015, v. 27, n. 9, p. 2427, doi. 10.1105/tpc.15.00391

By:

Shilo, Shay;
Melamed-Bessudo, Cathy;
Dorone, Yanniv;
Barkai, Naama;
Levy, Avraham A.

Publication type:

Article

GC-FID determination of nucleobases guanine, adenine, cytosine, and thymine from DNA by precolumn derivatization with isobutyl chloroformate.

Published in:

Journal of Analytical Science & Technology, 2016, v. 7, n. 1, p. 1, doi. 10.1186/s40543-016-0090-9

By:

Brohi, Rafi;
Khuhawar, Muhammad;
Khuhawar, Taj

Publication type:

Article

Identification of novel DNA-methylated genes that correlate with human prostate cancer and high-grade prostatic intraepithelial neoplasia.

Published in:

Prostate Cancer & Prostatic Diseases, 2013, v. 16, n. 4, p. 292, doi. 10.1038/pcan.2013.21

By:

Devaney, J M;
Wang, S;
Funda, S;
Long, J;
Taghipour, D J;
Tbaishat, R;
Furbert-Harris, P;
Ittmann, M;
Kwabi-Addo, B

Publication type:

Article

Characterization of the c9orf72 GC-rich low complexity sequence in two cohorts of Italian and Turkish ALS cases.

Published in:

Amyotrophic Lateral Sclerosis & Frontotemporal Degeneration, 2018, v. 19, n. 5/6, p. 426, doi. 10.1080/21678421.2018.1440407

By:

Corrado, Lucia;
Locci, Clarissa;
Bagarotti, Alessandra;
Barizzone, Nadia;
Cotella, Diego;
D'alfonso, Sandra;
Tiloca, Cinzia;
Colombrita, Claudia;
Ticozzi, Nicola;
Ratti, Antonia;
Silani, Vincenzo;
Hamzeiy, Hamid;
Nazli Basak, AYSE;
De marchi, Fabiola;
Mazzini, Letizia

Publication type:

Article

Computational Insights in DNA Methylation: Catalytic and Mechanistic Elucidations for Forming 3-Methyl Cytosine.

Published in:

Journal of Chemistry, 2022, p. 1, doi. 10.1155/2022/2673396

By:

Almatarneh, Mansour H.;
Kayed, Ghada G.;
Altarawneh, Mohammednoor;
Zhao, Yuming;
Verma, Amita

Publication type:

Article