Works matching DE "CYTOSINE"

Results: 1086

Loss of the abasic site sensor HMCES is synthetic lethal with the activity of the APOBEC3A cytosine deaminase in cancer cells.

Published in:

PLoS Biology, 2021, v. 19, n. 3, p. 1, doi. 10.1371/journal.pbio.3001176

By:

Biayna, Josep;
Garcia-Cao, Isabel;
Álvarez, Miguel M.;
Salvadores, Marina;
Espinosa-Carrasco, Jose;
McCullough, Marcel;
Supek, Fran;
Stracker, Travis H.

Publication type:

Article

Transcriptional Analysis of Microsatellites in Velvetbean Caterpillar Anticarsia gemmatalis Hübner, 1818.

Published in:

Cytogenetic & Genome Research, 2022, v. 162, n. 5, p. 273, doi. 10.1159/000527049

By:

Dias, Felipe Cordeiro;
de Souza, Rogério Fernandes;
Pezenti, Larissa Forim;
Dionisio, Jaqueline Fernanda;
Paulino, João Antônio Marques;
da Silva, Carlos Roberto Maximiano;
Sosa-Gómez, Daniel Ricardo;
da Rosa, Renata

Publication type:

Article

Inter-Cell and Inter-Chromosome Variability of 5-Hydroxymethylcytosine Patterns in Noncultured Human Embryonic and Extraembryonic Cells.

Published in:

Cytogenetic & Genome Research, 2018, v. 156, n. 3, p. 150, doi. 10.1159/000493906

By:

Efimova, Olga a.;
Pendina, anna a.;
Krapivin, Mikhail I.;
Kopat, Vladimir V.;
Tikhonov, andrei V.;
Petrovskaia-Kaminskaia, anastasiia V.;
Navodnikova, Polina M.;
Talantova, Olga E.;
Glotov, Oleg S.;
Baranov, Vladislav S.

Publication type:

Article

Crystal Structure and Properties of an Energetic Perchlorate Complex Compound with Copper and Cytosine.

Published in:

Propellants, Explosives, Pyrotechnics, 2021, v. 46, n. 5, p. 737, doi. 10.1002/prep.202000304

By:

Lewczuk, Rafał;
Rećko, Judyta;
Wojtulewski, Sławomir

Publication type:

Article

Alternations in VaSTS gene cytosine methylation and t-resveratrol production in response to UV-C irradiation in Vitis amurensis Rupr. cells.

Published in:

Plant Cell, Tissue & Organ Culture, 2016, v. 124, n. 1, p. 33, doi. 10.1007/s11240-015-0872-6

By:

Tyunin, Alexey;
Kiselev, Konstantin

Publication type:

Article

Rapid alterations of DNA sequence and cytosine methylation induced by somatic hybridization between Brassica oleracea L. var. italica and Brassica nigra (L.) Koch.

Published in:

Plant Cell, Tissue & Organ Culture, 2013, v. 115, n. 3, p. 395, doi. 10.1007/s11240-013-0371-6

By:

Sheng, Xiaoguang;
Zhao, Zhenqing;
Yu, Huifang;
Wang, Jiansheng;
Gu, Honghui

Publication type:

Article

Increased sensitivity of glioma cells to 5-fluorocytosine following photo-chemical internalization enhanced nonviral transfection of the cytosine deaminase suicide gene.

Published in:

Journal of Neuro-Oncology, 2014, v. 118, n. 1, p. 29, doi. 10.1007/s11060-014-1410-9

By:

Wang, Frederick;
Zamora, Genesis;
Sun, Chung-Ho;
Trinidad, Anthony;
Chun, Changho;
Kwon, Young;
Berg, Kristian;
Madsen, Steen;
Hirschberg, Henry

Publication type:

Article

TET family proteins: new players in gliomas.

Published in:

Journal of Neuro-Oncology, 2014, v. 116, n. 3, p. 429, doi. 10.1007/s11060-013-1328-7

By:

Bian, Er-Bao;
Zong, Gang;
Xie, Yong-Sheng;
Meng, Xiao-Ming;
Huang, Cheng;
Li, Jun;
Zhao, Bing

Publication type:

Article

F10 gene hypomethylation, a putative biomarker for glioma prognosis.

Published in:

Journal of Neuro-Oncology, 2012, v. 107, n. 3, p. 479, doi. 10.1007/s11060-011-0775-2

By:

Liu, Xiaoping;
Tang, Hailin;
Wang, Zeyou;
Huang, Chen;
Zhang, Zuping;
She, Xiaoling;
Wu, Minghua;
Li, Guiyuan

Publication type:

Article

Salt tolerance and alterations in cytosine methylation in the interspecific hybrids of Fraxinus velutina and Fraxinus mandshurica.

Published in:

Euphytica, 2015, v. 205, n. 3, p. 721, doi. 10.1007/s10681-015-1432-1

By:

Zeng, Fan-Suo;
Li, Lei-Lei;
Liang, Nan-Song;
Wang, Xuan;
Li, Xiang;
Zhan, Ya-Guang

Publication type:

Article

Calculation on spectrum of direct DNA damage induced by low-energy electrons including dissociative electron attachment.

Published in:

Radiation & Environmental Biophysics, 2017, v. 56, n. 1, p. 99, doi. 10.1007/s00411-016-0681-2

By:

Liu, Wei;
Tan, Zhenyu;
Zhang, Liming;
Champion, Christophe

Publication type:

Article

Cervicovaginal microbiota disorder combined with the change of cytosine phosphate guanine motif- toll like receptor 9 axis was associated with cervical cancerization.

Published in:

Journal of Cancer Research & Clinical Oncology, 2023, v. 149, n. 19, p. 17371, doi. 10.1007/s00432-023-05453-z

By:

Zheng, Xiao;
Hu, Nan;
Liu, Jiamin;
Zhao, Kailu;
Li, Huimin;
Wang, Jiahao;
Zhang, Mingxuan;
Zhang, Le;
Song, Li;
Lyu, Yuanjing;
Cui, Meng;
Ding, Ling;
Wang, Jintao

Publication type:

Article

DNA-Templated Fluorescent Silver Nanoclusters Inhibit Bacterial Growth While Being Non-Toxic to Mammalian Cells.

Published in:

Molecules, 2021, v. 26, n. 13, p. 4045, doi. 10.3390/molecules26134045

By:

Rolband, Lewis;
Yourston, Liam;
Chandler, Morgan;
Beasock, Damian;
Danai, Leyla;
Kozlov, Seraphim;
Marshall, Nolan;
Shevchenko, Oleg;
Krasnoslobodtsev, Alexey V.;
Afonin, Kirill A.

Publication type:

Article

Synthesis and Antiviral Evaluation of 3′-Fluoro-5′-norcarbocyclic Nucleoside Phosphonates Bearing Uracil and Cytosine as Potential Antiviral Agents.

Published in:

Molecules, 2020, v. 25, n. 16, p. 3708, doi. 10.3390/molecules25163708

By:

Geant, Pierre-Yves;
Uttaro, Jean-Pierre;
Périgaud, Christian;
Mathé, Christophe;
Seley-Radtke, Katherine

Publication type:

Article

SERS Studies of Adsorption on Gold Surfaces of Mononucleotides with Attached Hexanethiol Moiety: Comparison with Selected Single-Stranded Thiolated DNA Fragments.

Published in:

Molecules, 2019, v. 24, n. 21, p. 3921, doi. 10.3390/molecules24213921

By:

Pyrak, Edyta;
Jaworska, Aleksandra;
Kudelski, Andrzej;
Malek, Kamilla

Publication type:

Article

Monitoring of pH Using an i-Motif-Forming Sequence Containing a Fluorescent Cytosine Analogue, tC.

Published in:

Molecules, 2019, v. 24, n. 5, p. 952, doi. 10.3390/molecules24050952

By:

Bielecka, Patrycja;
Dembska, Anna;
Juskowiak, Bernard

Publication type:

Article

Study of Photochemical Cytosine to Uracil Transition via Ultrafast Photo-Cross-Linking Using Vinylcarbazole Derivatives in Duplex DNA.

Published in:

Molecules, 2018, v. 23, n. 4, p. 828, doi. 10.3390/molecules23040828

By:

Sethi, Siddhant;
Nakamura, Shigetaka;
Fujimoto, Kenzo

Publication type:

Article

A 7-Deazaadenosylaziridine Cofactor for Sequence-Specific Labeling of DNA by the DNA Cytosine-C5 Methyltransferase M.HhaI.

Published in:

Molecules, 2015, v. 20, n. 11, p. 20805, doi. 10.3390/molecules201119723

By:

Kunkel, Falk;
Lurz, Rudi;
Weinhold, Elmar

Publication type:

Article

Fluorescent Sensor for PH Monitoring Based on an i-Motif- – Switching Aptamer Containing a Tricyclic Cytosine Analogue (tC).

Published in:

Molecules, 2015, v. 20, n. 10, p. 18511, doi. 10.3390/molecules201018511

By:

Bielecka, Patrycja;
Juskowiak, Bernard

Publication type:

Article

Carboxylated Acyclonucleosides: Synthesis and RNase A Inhibition.

Published in:

Molecules, 2015, v. 20, n. 4, p. 5924, doi. 10.3390/molecules20045924

By:

Chakraborty, Kaustav;
Dasgupta, Swagata;
Pathak, Tanmaya

Publication type:

Article

Optical Characterization of Oligonucleotide DNA Influenced by Magnetic Fields.

Published in:

Molecules, 2013, v. 18, n. 10, p. 11797, doi. 10.3390/molecules181011797

By:

Banihashemian, Seyedeh Maryam;
Periasamy, Vengadesh;
Mohammadi, Seyed Mohammad Hossein Mousa Kazemi;
Ritikos, Richard;
Rahman, Saadah Abdul

Publication type:

Article

Protective Effect of CpG-Oligodeoxynucleotides Against Low- and High-LET Irradiation.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2014, v. 34, n. 5, p. 1663, doi. 10.1159/000366368

By:

Zhang, Chao;
Zheng, Min;
Zhu, Xiang-Hui;
Li, Sha;
Ni, Jin;
Li, Bai-Long;
Liu, Hu;
Gao, Fu;
Cai, Jian-Ming

Publication type:

Article

Luminescence of Cytosine Vapor in an Electric Discharge.

Published in:

Journal of Applied Spectroscopy, 2020, v. 87, n. 2, p. 256, doi. 10.1007/s10812-020-00993-5

By:

Shafranyosh, M. I.;
Zapatokova, M.;
Sukhoviya, M. I.;
Shafranyosh, I. I.;
Svida, Yu. Yu.

Publication type:

Article

Luminescence of cytosine vapor excited by slow electrons.

Published in:

Journal of Applied Spectroscopy, 2013, v. 80, n. 1, p. 43, doi. 10.1007/s10812-013-9718-3

By:

Shpenik, O.;
Erdevdy, N.;
Zvenighorodsky, V.;
Romanova, L.

Publication type:

Article

Persistent minimal sequences of SARS-CoV-2.

Published in:

Bioinformatics, 2020, v. 36, n. 21, p. 5129, doi. 10.1093/bioinformatics/btaa686

By:

Pratas, Diogo;
Silva, Jorge M

Publication type:

Article

Finding de novo methylated DNA motifs.

Published in:

Bioinformatics, 2019, v. 35, n. 18, p. 3287, doi. 10.1093/bioinformatics/btz079

By:

Ngo, Vu;
Wang, Mengchi;
Wang, Wei

Publication type:

Article

Inference and visualization of DNA damage patterns using a grade of membership model.

Published in:

Bioinformatics, 2019, v. 35, n. 8, p. 1292, doi. 10.1093/bioinformatics/bty779

By:

Al-Asadi, Hussein;
Dey, Kushal K;
Novembre, John;
Stephens, Matthew

Publication type:

Article

A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.

Published in:: Bioinformatics, 2018, v. 34, n. 16, p. 2715, doi. 10.1093/bioinformatics/bty174
Publication type:: Article

Arioc: GPU-accelerated alignment of short bisulfite-treated reads.

Published in:

Bioinformatics, 2018, v. 34, n. 15, p. 2673, doi. 10.1093/bioinformatics/bty167

By:

Wilton, Richard;
Li, Xin;
Feinberg, Andrew P;
Szalay, Alexander S

Publication type:

Article

Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 8, p. 1414, doi. 10.1093/bioinformatics/btx778

By:

Graña, Osvaldo;
López-Fernández, Hugo;
Fdez-Riverola, Florentino;
Pisano, David González;
Glez-Peña, Daniel

Publication type:

Article

In silico structural modeling of multiple epigenetic marks on DNA.

Published in:

Bioinformatics, 2018, v. 34, n. 1, p. 41, doi. 10.1093/bioinformatics/btx516

By:

Krawczyk, Konrad;
Demharter, Samuel;
Knapp, Bernhard;
Deane, Charlotte M;
Minary, Peter

Publication type:

Article

P3BSseq: parallel processing pipeline software for automatic analysis of bisulfite sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 3, p. 428, doi. 10.1093/bioinformatics/btw633

By:

Luu, Phuc-Loi;
Gerovska, Daniela;
Arrospide-Elgarresta, Mikel;
Retegi-Carrión, Sugoi;
Schöler, Hans R.;
Araúzo-Bravo, Marcos J.

Publication type:

Article

OxyBS: estimation of 5-methylcytosine and 5-hydroxymethylcytosine from tandem-treated oxidative bisulfite and bisulfite DNA.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2505, doi. 10.1093/bioinformatics/btw158

By:

Houseman, E. Andres;
Johnson, Kevin C.;
Christensen, Brock C.

Publication type:

Article

meRanTK: methylated RNA analysis ToolKit.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 782, doi. 10.1093/bioinformatics/btv647

By:

Rieder, Dietmar;
Amort, Thomas;
Kugler, Elisabeth;
Lusser, Alexandra;
Trajanoski, Zlatko

Publication type:

Article

A trimming-and-retrieving alignment scheme for reduced representation bisulfite sequencing.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. 2040, doi. 10.1093/bioinformatics/btv089

By:

Xuefeng Wang;
Xiaoqing Yu;
Wei Zhu;
McCombie, W. Richard;
Antoniou, Eric;
Powers, R. Scott;
Davidson, Nicholas O.;
Li, Ellen;
Williams, Jennie

Publication type:

Article

Analysis of nanopore data using hidden Markov models.

Published in:

Bioinformatics, 2015, v. 31, n. 12, p. 1897, doi. 10.1093/bioinformatics/btv046

By:

Schreiber, Jacob;
Karplus, Kevin

Publication type:

Article

A cautionary note on using binary calls for analysis of DNA methylation.

Published in:

Bioinformatics, 2015, v. 31, n. 9, p. 1519, doi. 10.1093/bioinformatics/btv090

By:

Prochenka, Agnieszka;
Pokarowski, Piotr;
Gasperowicz, Piotr;
Kosińska, Joanna;
Stawiński, Piotr;
Zbieć-Piekarska, Renata;
Spólnicka, Magdalena;
Branicki, Wojciech;
Płoski, Rafał

Publication type:

Article

Multiscale DNA partitioning: statistical evidence for segments.

Published in:

Bioinformatics, 2014, v. 30, n. 16, p. 2255, doi. 10.1093/bioinformatics/btu180

By:

Futschik, Andreas;
Hotz, Thomas;
Munk, Axel;
Sieling, Hannes

Publication type:

Article

MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays.

Published in:

Bioinformatics, 2012, v. 28, n. 22, p. 2930, doi. 10.1093/bioinformatics/bts562

By:

Seifert, Michael;
Cortijo, Sandra;
Colomé-Tatché, Maria;
Johannes, Frank;
Roudier, François;
Colot, Vincent

Publication type:

Article

Fast and sensitive mapping of bisulfite-treated sequencing data.

Published in:

Bioinformatics, 2012, v. 28, n. 13, p. 1698, doi. 10.1093/bioinformatics/bts254

By:

Otto, Christian;
Stadler, Peter F.;
Hoffmann, Steve

Publication type:

Article

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads.

Published in:

Bioinformatics, 2012, v. 28, n. 13, p. 1795, doi. 10.1093/bioinformatics/bts264

By:

Harris, Elena Y.;
Ponts, Nadia;
Le Roch, Karine G.;
Lonardi, Stefano

Publication type:

Article

CONTRA: copy number analysis for targeted resequencing.

Published in:

Bioinformatics, 2012, v. 28, n. 10, p. 1307, doi. 10.1093/bioinformatics/bts146

By:

Li, Jason;
Lupat, Richard;
Amarasinghe, Kaushalya C.;
Thompson, Ella R.;
Doyle, Maria A.;
Ryland, Georgina L.;
Tothill, Richard W.;
Halgamuge, Saman K.;
Campbell, Ian G.;
Gorringe, Kylie L.

Publication type:

Article

Bifunctional Role of Fe(II)/2OG-Dependent TET Family 5-Methylcytosine Dioxygenases and ALKBH2,3 in Modified Cytosine Demethylation.

Published in:

BioChem, 2022, v. 2, n. 3, p. 171, doi. 10.3390/biochem2030012

By:

Dey, Aninda Sundar

Publication type:

Article

Integrative Molecular Analysis of DNA Methylation Dynamics Unveils Molecules with Prognostic Potential in Breast Cancer.

Published in:

BioMedInformatics, 2023, v. 3, n. 2, p. 434, doi. 10.3390/biomedinformatics3020029

By:

Mehmood, Rashid;
Alsaleh, Alanoud;
Want, Muzamil Y.;
Ahmad, Ijaz;
Siraj, Sami;
Ishtiaq, Muhammad;
Alshehri, Faizah A.;
Naseem, Muhammad;
Yasuhara, Noriko

Publication type:

Article

Comprehensive evaluation and prediction of editing outcomes for near-PAMless adenine and cytosine base editors.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07078-5

By:

Zhou, Xiaoyu;
Gao, Jingjing;
Luo, Liheng;
Huang, Changcai;
Wu, Jiayu;
Wang, Xiaoyue

Publication type:

Article

The implications of APOBEC3-mediated C-to-U RNA editing for human disease.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06239-w

By:

Van Norden, Melissa;
Falls, Zackary;
Mandloi, Sapan;
Segal, Brahm H.;
Baysal, Bora E.;
Samudrala, Ram;
Elkin, Peter L.

Publication type:

Article

Antagonistic interactions safeguard mitotic propagation of genetic and epigenetic information in zebrafish.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-023-05692-3

By:

Lawir, Divine-Fondzenyuy;
Soza-Ried, Cristian;
Iwanami, Norimasa;
Siamishi, Iliana;
Bylund, Göran O.;
O´Meara, Connor;
Sikora, Katarzyna;
Kanzler, Benoît;
Johansson, Erik;
Schorpp, Michael;
Cauchy, Pierre;
Boehm, Thomas

Publication type:

Article

Chromatin: Retrotransposons and heterochromatin spreading.

Published in:

Nature Reviews Genetics, 2013, v. 14, n. 2, p. 79, doi. 10.1038/nrg3422

By:

Burgess, Darren J.

Publication type:

Article

Epigenomics: dissecting the roles of Pol V.

Published in:

2012

By:

Jones, Bryony

Publication type:

journal article

Positive/negative ion-switching-based LC–MS/MS method for quantification of cytosine derivatives produced by the TET-family 5-methylcytosine dioxygenases.

Published in:

Biology Methods & Protocols, 2020, v. 5, n. 1, p. 1, doi. 10.1093/biomethods/bpaa019

By:

Dey, Aninda Sundar;
Ayon, Navid J;
Bhattacharya, Chayan;
Gutheil, William G;
Mukherji, Mridul

Publication type:

Article