Works matching DE "COMPUTERS in biology"

Results: 970

Physically-based simulation of plant leaf growth.

Published in:

Computer Animation & Virtual Worlds, 2004, v. 15, n. 3/4, p. 237, doi. 10.1002/cav.26

By:

Wang, Iris R.;
Wan, Justin W. L.;
Baranoski, Gladimir V. G.

Publication type:

Article

The State of Bioinformatics Kits.

Published in:

2009

By:

OSBORNE, BRIAN

Publication type:

Opinion

Three Key Ingredients to Cost-Effective Clinical System Interoperability.

Published in:

Bio-IT World, 2009, v. 8, n. 1, p. 30

By:

RUBINSTEIN, RON

Publication type:

Article

The Evolving Boon of Bioinformatics.

Published in:

Bio-IT World, 2006, v. 5, n. 1, p. 1

By:

Weil, Nancy

Publication type:

Article

What's 'Post' About Postgenomic?

Published in:

Bio-IT World, 2005, v. 4, n. 8, p. 17

By:

Frederickson, Robert M.

Publication type:

Article

Birney Receives Franklin Award.

Published in:

Bio-IT World, 2005, v. 4, n. 6, p. 16

By:

McDonough, Maureen

Publication type:

Article

2005 Bio-IT World Conference + Expo.

Published in:

Bio-IT World, 2005, v. 4, n. 6, p. 10

By:

Bostrom, Johan

Publication type:

Article

Modeling Analytics: Fully Integrated.

Published in:: 2005
Publication type:: Product Review

MathWorks Rolls Out New Analysis Tools.

Published in:: 2005
Publication type:: Product Review

Make Room for Microsoft.

Published in:

Bio-IT World, 2005, v. 4, n. 2, p. 1

By:

Salamone, Salvatore

Publication type:

Article

Distributing the Workload.

Published in:

Bio-IT World, 2004, v. 3, n. 9, p. S-22

By:

Augen, Jeff

Publication type:

Article

Computation Tools Bust Down the Domain Doors.

Published in:

Bio-IT World, 2004, v. 3, n. 9, p. S-18

By:

Kahn, Scott

Publication type:

Article

Biology-Aware Data Warehouses: The Next Discovery 'Appliance'

Published in:

Bio-IT World, 2004, v. 3, n. 9, p. S-10

By:

Blake, Bill

Publication type:

Article

Do ASPs Work for Life Science?

Published in:

Bio-IT World, 2004, v. 3, n. 8, p. 36

By:

Hanover, Judy

Publication type:

Article

R Is Ready to Rumble.

Published in:

Bio-IT World, 2004, v. 3, n. 7, p. 20

By:

Van Etten, Bill

Publication type:

Article

BioSapiens Born in Europe.

Published in:: Bio-IT World, 2004, v. 3, n. 3, p. 22
Publication type:: Article

Toolkit Speeds Data Analysis.

Published in:: 2004
Publication type:: Product Review

Sifting Through Standards.

Published in:

Bio-IT World, 2003, v. 2, n. 3, p. 34

By:

Dweck, Richard

Publication type:

Article

Too Much Informatics.

Published in:

Bio-IT World, 2003, v. 2, n. 3, p. 36

By:

Greeley, Michael A.

Publication type:

Article

PASTASpark: multiple sequence alignment meets Big Data.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2948, doi. 10.1093/bioinformatics/btx354

By:

Abuín, José M.;
Pena, Tomás F.;
Pichel, Juan C.

Publication type:

Article

ConKit: a python interface to contact predictions.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2209, doi. 10.1093/bioinformatics/btx148

By:

Simkovic, Felix;
Thomas, Jens M. H.;
Rigden, Daniel J.

Publication type:

Article

SnapDock--template-based docking by Geometric Hashing.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i30, doi. 10.1093/bioinformatics/btx233

By:

Estrin, Michael;
Wolfson, Haim J.

Publication type:

Article

Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1545, doi. 10.1093/bioinformatics/btx012

By:

Basu, Sumanta;
Duren, William;
Evans, Charles R.;
Burant, Charles F.;
Michailidis, George;
Karnovsky, Alla

Publication type:

Article

DeuteRater: a tool for quantifying peptide isotope precision and kinetic proteomics.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1514, doi. 10.1093/bioinformatics/btx009

By:

Naylor, Bradley C.;
Porter, Michael T.;
Wilson, Elise;
Herring, Adam;
Lofthouse, Spencer;
Hannemann, Austin;
Piccolo, Stephen R.;
Rockwood, Alan L.;
Price, John C.

Publication type:

Article

VCF-kit: assorted utilities for the variant call format.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1581, doi. 10.1093/bioinformatics/btx011

By:

Cook, Daniel E.;
Andersen, Erik C.

Publication type:

Article

FASTdoop: a versatile and efficient library for the input of FASTA and FASTQ files for MapReduce Hadoop bioinformatics applications.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1575, doi. 10.1093/bioinformatics/btx010

By:

Petrillo, Umberto Ferraro;
Roscigno, Gianluca;
Cattaneo, Giuseppe;
Giancarlo, Raffaele

Publication type:

Article

Mutual enrichment in aggregated ranked lists with applications to gene expression regulation.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i464, doi. 10.1093/bioinformatics/btw435

By:

Cohn-Alperovich, Dalia;
Rabner, Alona;
Kifer, Ilona;
Mandel-Gutfreund, Yael;
Yakhini, Zohar

Publication type:

Article

densityCut: an efficient and versatile topological approach for automatic clustering of biological data.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2567, doi. 10.1093/bioinformatics/btw227

By:

Ding, Jiarui;
Shah, Sohrab;
Condon, Anne

Publication type:

Article

XGSA: A statistical method for cross-species gene set analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i620, doi. 10.1093/bioinformatics/btw428

By:

Djordjevic, Djordje;
Kusumi, Kenro;
Ho, Joshua W. K.

Publication type:

Article

Jumping across biomedical contexts using compressive data fusion.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. i90, doi. 10.1093/bioinformatics/btw247

By:

Zitnik, Marinka;
Zupan, Blaz

Publication type:

Article

UniAlign: protein structure alignment meets evolution.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3139, doi. 10.1093/bioinformatics/btv354

By:

Chunyu Zhao;
Sacan, Ahmet

Publication type:

Article

EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3198, doi. 10.1093/bioinformatics/btv356

By:

Wijetunge, Chalini D.;
Saeed, Isaam;
Boughton, Berin A.;
Spraggins, Jeffrey M.;
Caprioli, Richard M.;
Bacic, Antony;
Roessner, Ute;
Halgamuge, Saman K.

Publication type:

Article

DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3222, doi. 10.1093/bioinformatics/btv333

By:

van Zundert, G. C. P.;
Bonvin, A. M. J. J.

Publication type:

Article

FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3207, doi. 10.1093/bioinformatics/btv280

By:

Lam, Ka-Kit;
LaButti, Kurt;
Khalak, Asif;
Tse, David

Publication type:

Article

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3210, doi. 10.1093/bioinformatics/btv351

By:

Simão, Felipe A.;
Waterhouse, Robert M.;
Ioannidis, Panagiotis;
Kriventseva, Evgenia V.;
Zdobnov, Evgeny M.

Publication type:

Article

RPdb: a database of experimentally verified cellular reprogramming records.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3237, doi. 10.1093/bioinformatics/btv331

By:

Yi Shen;
Fan Gao;
Minghui Wang;
Ao Li

Publication type:

Article

QVZ: lossy compression of quality values.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3122, doi. 10.1093/bioinformatics/btv330

By:

Malysa, Greg;
Hernaez, Mikel;
Ochoa, Idoia;
Rao, Milind;
Ganesan, Karthik;
Weissman, Tsachy

Publication type:

Article

A web application for the unspecific detection of differentially expressed DNA regions in strand-specific expression data.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3228, doi. 10.1093/bioinformatics/btv343

By:

Juanes, José M.;
Miguel, Ana;
Morales, Lucas J.;
Pérez-Ortín, José E.;
Arnau, Vicente

Publication type:

Article

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3147, doi. 10.1093/bioinformatics/btv316

By:

El-Kebir, Mohammed;
Soueidan, Hayssam;
Hume, Thomas;
Beisser, Daniela;
Dittrich, Marcus;
Müller, Tobias;
Blin, Guillaume;
Heringa, Jaap;
Nikolski, Macha;
Wessels, Lodewyk F. A.;
Klau, Gunnar W.

Publication type:

Article

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 140, doi. 10.1093/bioinformatics/btu601

By:

Corpas, Manuel;
Jimenez, Rafael C.;
Bongcam-Rudloff, Erik;
Budd, Aidan;
Brazas, Michelle D.;
Fernandes, Pedro L.;
Gaeta, Bruno;
van Gelder, Celia;
Korpelainen, Eija;
Lewitter, Fran;
McGrath, Annette;
MacLean, Daniel;
Palagi, Patricia M.;
Rother, Kristian;
Taylor, Jan;
Via, Allegra;
Watson, Mick;
Schneider, Maria Victoria;
Attwood, Teresa K.

Publication type:

Article

Achievements and challenges in structural bioinformatics and computational biophysics.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 146, doi. 10.1093/bioinformatics/btu769

By:

Samish, Ilan;
Bourne, Philip E.;
Najmanovich, Rafael J.

Publication type:

Article

Individual-level analysis of differential expression of genes and pathways for personalized medicine.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 62, doi. 10.1093/bioinformatics/btu522

By:

Wang, Hongwei;
Sun, Qiang;
Zhao, Wenyuan;
Qi, Lishuang;
Gu, Yunyan;
Li, Pengfei;
Zhang, Mengmeng;
Li, Yang;
Liu, Shu-Lin;
Guo, Zheng

Publication type:

Article

JAMM: a peak finder for joint analysis of NGS replicates.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 48, doi. 10.1093/bioinformatics/btu568

By:

Ibrahim, Mahmoud M.;
Lacadie, Scott A.;
Ohler, Uwe

Publication type:

Article

ballaxy: web services for structural bioinformatics.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 121, doi. 10.1093/bioinformatics/btu574

By:

Hildebrandt, Anna Katharina;
Stöckel, Daniel;
Fischer, Nina M.;
de la Garza, Luis;
Krüger, Jens;
Nickels, Stefan;
Röttig, Marc;
Schärfe, Charlotta;
Schumann, Marcel;
Thiel, Philipp;
Lenhof, Hans-Peter;
Kohlbacher, Oliver;
Hildebrandt, Andreas

Publication type:

Article

circlize implements and enhances circular visualization in R.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2811, doi. 10.1093/bioinformatics/btu393

By:

Gu, Zuguang;
Gu, Lei;
Eils, Roland;
Schlesner, Matthias;
Brors, Benedikt

Publication type:

Article

Improving MEME via a two-tiered significance analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 14, p. 1965, doi. 10.1093/bioinformatics/btu163

By:

Tanaka, Emi;
Bailey, Timothy L.;
Keich, Uri

Publication type:

Article

A general method for accurate estimation of false discovery rates in identification of differentially expressed genes.

Published in:

Bioinformatics, 2014, v. 30, n. 14, p. 2018, doi. 10.1093/bioinformatics/btu124

By:

Tan, Yuan-De;
Xu, Hongyan

Publication type:

Article

Turtle: Identifying frequent k-mers with cache-efficient algorithms.

Published in:

Bioinformatics, 2014, v. 30, n. 14, p. 1950, doi. 10.1093/bioinformatics/btu132

By:

Roy, Rajat Shuvro;
Bhattacharya, Debashish;
Schliep, Alexander

Publication type:

Article

ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3220, doi. 10.1093/bioinformatics/btt551

By:

Huntley, Melanie A.;
Larson, Jessica L.;
Chaivorapol, Christina;
Becker, Gabriel;
Lawrence, Michael;
Hackney, Jason A.;
Kaminker, Joshua S.

Publication type:

Article

ISCB/SPRINGER series in computational biology.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3246, doi. 10.1093/bioinformatics/btt630

By:

Dress, Andreas;
Linial, Michal;
Troyanskaya, Olga;
Vingron, Martin

Publication type:

Article