Works matching DE "COMPUTERS in biology"

Results: 965

Harnessing Computers to Spur Biomedical and Drug Research.

Published in:

Innovation, 2006, v. 6, n. 1, p. 65

By:

Yu Zong Chen

Publication type:

Article

Improving the structure MCMC sampler for Bayesian networks by introducing a new edge reversal move.

Published in:

Machine Learning, 2008, v. 71, n. 2-3, p. 265, doi. 10.1007/s10994-008-5057-7

By:

Marco Grzegorczyk;
Dirk Husmeier

Publication type:

Article

Bioinformatic approach for cholangiocyte pathophysiology.

Published in:

Hepatology Research, 2007, v. 37, p. S444, doi. 10.1111/j.1872-034X.2007.00233.x

By:

Ueno, Yoshiyuki;
Fukushima, Koji;
Nakagome, Yu;
Kido, Osamu;
Shimosegawa, Tooru

Publication type:

Article

Cell fate transitions and the replication timing decision point.

Published in:

Journal of Cell Biology, 2010, v. 191, n. 5, p. 899, doi. 10.1083/jcb.201007125

By:

Gilbert, David M.

Publication type:

Article

Categorisation through evidence accumulation in an active vision system.

Published in:

Connection Science, 2010, v. 22, n. 4, p. 331, doi. 10.1080/09540091.2010.505976

By:

Mirolli, Marco;
Ferrauto, Tomassino;
Nolfi, Stefano

Publication type:

Article

Using hybrid alignment for iterative sequence database searches.

Published in:

Concurrency & Computation: Practice & Experience, 2004, v. 16, n. 9, p. 841, doi. 10.1002/cpe.809

By:

Yuheng Li;
Lauria, Mario;
Bundschuh, Ralf

Publication type:

Article

Real-time primer design for DNA chips.

Published in:

Concurrency & Computation: Practice & Experience, 2004, v. 16, n. 9, p. 855, doi. 10.1002/cpe.810

By:

Simmler, H.;
Singpiel, H.;
Männer, R.

Publication type:

Article

ON SOME OPEN PROBLEMS ARISING FROM THE APPLICATION OF COALITIONAL GAMES IN MEDICINE.

Published in:

International Game Theory Review, 2013, v. 15, n. 3, p. -1, doi. 10.1142/S0219198913400203

By:

MORETTI, STEFANO

Publication type:

Article

Expedited batch processing and analysis of transposon insertions.

Published in:: BMC Research Notes, 2011, v. 4, n. 1, p. 482, doi. 10.1186/1756-0500-4-482
Publication type:: Article

gViz, a novel tool for the visualization of co-expression networks.

Published in:: BMC Research Notes, 2011, v. 4, n. 1, p. 452, doi. 10.1186/1756-0500-4-452
Publication type:: Article

An efficient simulator of 454 data using configurable statistical models.

Published in:: BMC Research Notes, 2011, v. 4, n. 1, p. 449, doi. 10.1186/1756-0500-4-449
Publication type:: Article

GlycoForm and Glycologue: two softwareapplications for the rapid construction and displayof N-glycans from mammalian sources.

Published in:

BMC Research Notes, 2010, v. 3, p. 173, doi. 10.1186/1756-0500-3-173

By:

McDonald, Andrew G.;
Tipton, Keith F.;
Stroop, Corné J. M.;
Davey, Gavin P.

Publication type:

Article

Bioinformatic analysis of CaBP/calneuron proteins reveals a family of highly conserved vertebrate Ca<sup>2+</sup>-binding proteins.

Published in:

BMC Research Notes, 2010, v. 3, p. 118, doi. 10.1186/1756-0500-3-118

By:

McCue, Hannah V.;
Haynes, Lee P.;
Burgoyne, Robert D.

Publication type:

Article

The Supertree Tool Kit.

Published in:

BMC Research Notes, 2010, v. 3, p. 95, doi. 10.1186/1756-0500-3-95

By:

Davis, Katie E.;
Hill, Jon

Publication type:

Article

KISSa: a strategy to build multiple sequence alignments from pairwise comparisons of very closely related sequences.

Published in:

BMC Research Notes, 2009, v. 2, p. 1, doi. 10.1186/1756-0500-2-91

By:

Marass, Francesco;
Upton, Chris

Publication type:

Article

CUDASW++: optimizing Smith-Waterman sequence database searches for CUDA-enabled graphics processing units.

Published in:

BMC Research Notes, 2009, v. 2, p. 1, doi. 10.1186/1756-0500-2-73

By:

Yongchao Liu;
Maskell, Douglas L.;
Schmidt, Bertil

Publication type:

Article

Perl module and PISE wrappers for the integrated analysis of sequence data and SNP features.

Published in:

BMC Research Notes, 2009, v. 2, p. 1, doi. 10.1186/1756-0500-2-92

By:

Jayashree, B.;
BhanuPrakash, A.;
Jami, Anusha;
Reddy, P. Srinivasa;
Nayak, Spurthi;
Varshney, Rajeev K.

Publication type:

Article

Correction to: Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2017: proceedings.

Published in:: 2017
Publication type:: Correction Notice

An Almost Quadratic Time Algorithm for Sparse Spliced Alignment.

Published in:

Theory of Computing Systems, 2011, v. 48, n. 1, p. 189, doi. 10.1007/s00224-009-9239-x

By:

Sakai, Yoshifumi

Publication type:

Article

IDP–CRF: Intrinsically Disordered Protein/Region Identification Based on Conditional Random Fields.

Published in:

International Journal of Molecular Sciences, 2018, v. 19, n. 9, p. 2483, doi. 10.3390/ijms19092483

By:

Liu, Yumeng;
Wang, Xiaolong;
Liu, Bin

Publication type:

Article

The Plant-Associated Microbe Gene Ontology (PAMGO) Consortium: community development of new Gene Ontology terms describing biological processes involved in microbe-host interactions.

Published in:

BMC Microbiology, 2009, v. 9, p. 1, doi. 10.1186/1471-2180-9-S1-S1

By:

Torto-Alalibo, Trudy;
Collmer, Candace W.;
Gwinn-Giglio, Michelle

Publication type:

Article

Multitrait analysis of quantitative trait loci using Bayesian composite space approach.

Published in:

BMC Genetics, 2008, v. 9, p. 1, doi. 10.1186/1471-2156-9-48

By:

Ming Fang;
Dan Jiang;
Li Jun Pu;
Hui Jiang Gao;
Peng Ji;
Hong Yi Wang;
Run Qing Yang

Publication type:

Article

Accelerating pairwise statistical significance estimation for local alignment by harvesting GPU's power.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 5, p. 1, doi. 10.1186/1471-2105-13-S5-S3

By:

Zhang, Yuhong;
Misra, Sanchit;
Agrawal, Ankit;
Patwary, Md Mostofa Ali;
Liao, Wei-keng;
Qin, Zhiguang;
Choudhary, Alok

Publication type:

Article

Propagating semantic information in biochemical network models.

Published in:: BMC Bioinformatics, 2012, v. 13, n. Suppl 4, p. 18, doi. 10.1186/1471-2105-13-18
Publication type:: Article

Semantic Web Applications and Tools for the Life Sciences: SWAT4LS 2010.

Published in:

BMC Bioinformatics, 2012, v. 13, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-13-S1-S1

By:

Burger, Albert;
Paschke, Adrian;
Romano, Paolo;
Marshall, M. Scott;
Splendiani, Andrea

Publication type:

Article

F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 57, doi. 10.1186/1471-2105-13-57

By:

Larhlimi, Abdelhalim;
David, Laszlo;
Selbig, Joachim;
Bockmayr, Alexander

Publication type:

Article

Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 48, doi. 10.1186/1471-2105-13-48

By:

Peterlongo, Pierre;
Chikhi, Rayan

Publication type:

Article

Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 209, doi. 10.1186/1471-2105-13-209

By:

Talevich, Eric;
Invergo, Brandon M.;
A. Cock, Peter J.;
Chapman, Brad A.

Publication type:

Article

SDAR: a practical tool for graphical analysis of two-dimensional data.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 201, doi. 10.1186/1471-2105-13-201

By:

Weeratunga, Saroja;
Nien-Jen Hu;
Simon, Anne;
Hofmann, Andreas

Publication type:

Article

Normalization of ChIP-seq data with control.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 199, doi. 10.1186/1471-2105-13-199

By:

Kun Liang;
Kelesş, Sündüz

Publication type:

Article

Early classification of multivariate temporal observations by extraction of interpretable shapelets.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 195, doi. 10.1186/1471-2105-13-195

By:

Ghalwash, Mohamed F.;
Obradovic, Zoran

Publication type:

Article

Multiple structure alignment with msTALI.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 105, doi. 10.1186/1471-2105-13-105

By:

Shealy, Paul;
Valafar, Homayoun

Publication type:

Article

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 141, doi. 10.1186/1471-2105-13-141

By:

Wilke, Andreas;
Harrison, Travis;
Wilkening, Jared;
Field, Dawn;
Glass, Elizabeth M.;
Kyrpides, Nikos;
Mavrommatis, Konstantinos;
Meyer, Folker

Publication type:

Article

Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 134, doi. 10.1186/1471-2105-13-134

By:

Jian Ye;
Coulouris, George;
Zaretskaya, Irena;
Cutcutache, Ioana;
Rozen, Steve;
Madden, Thomas L.

Publication type:

Article

Gene regulatory network modeling via global optimization of high-order dynamic Bayesian network.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 131, doi. 10.1186/1471-2105-13-131

By:

Xuan Vinh, Nguyen;
Chetty, Madhu;
Coppel, Ross;
Wangikar, Pramod P.

Publication type:

Article

Web tools for large-scale 3D biological images and atlases.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 122, doi. 10.1186/1471-2105-13-122

By:

Husz, Zsolt L.;
Burton, Nicholas;
Hill, Bill;
Milyaev, Nestor;
Baldock, Richard A.

Publication type:

Article

MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 117, doi. 10.1186/1471-2105-13-117

By:

Collingridge, Peter W.;
Kelly, Steven

Publication type:

Article

Enumerating tree-like chemical graphs with given upper and lower bounds on path frequencies.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S3

By:

Shimizu, Masaaki;
Nagamochi, Hiroshi;
Akutsu, Tatsuya

Publication type:

Article

Development of a classification scheme for disease-related enzyme information.

Published in:: BMC Bioinformatics, 2011, v. 12, n. Suppl 7, p. 329, doi. 10.1186/1471-2105-12-329
Publication type:: Article

Domain architecture conservation in orthologs.

Published in:: BMC Bioinformatics, 2011, v. 12, n. Suppl 7, p. 326, doi. 10.1186/1471-2105-12-326
Publication type:: Article

mDAG: a web-based tool for analyzing microarray data with multiple treatments.

Published in:

2011

By:

Phan, Vinhthuy T.;
Vo, Nam S.;
Sutter, Thomas R.

Publication type:

Abstract

Unraveling gene regulatory networks from timeresolved gene expression data - a measures comparison study.

Published in:: BMC Bioinformatics, 2011, v. 12, n. Suppl 6, p. 292, doi. 10.1186/1471-2105-12-292
Publication type:: Article

CLOSEST STRING WITH OUTLIERS.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S55

By:

Boucher, Christina;
Ma, Bin

Publication type:

Article

Tree edit distance for leaf-labelled trees on free leafset and its comparison with frequent subsplit dissimilarity and popular distance measures.

Published in:

BMC Bioinformatics, 2011, v. 12, n. 1, p. 204, doi. 10.1186/1471-2105-12-204

By:

Koperwas, Jakub;
Walczak, Krzysztof

Publication type:

Article

CSI-OMIM - Clinical Synopsis Search in OMIM.

Published in:

BMC Bioinformatics, 2011, v. 12, n. 1, p. 65, doi. 10.1186/1471-2105-12-65

By:

Cohen, Raphael;
Gefen, Avitan;
Elhadad, Michael;
Birk, Ohad S.

Publication type:

Article

A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines.

Published in:

BMC Bioinformatics, 2011, v. 12, n. 1, p. 61, doi. 10.1186/1471-2105-12-61

By:

Cieślik, Marcin;
Mura, Cameron

Publication type:

Article

Two new ArrayTrack libraries for personalized biomedical research.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1

By:

Xu, Joshua;
Wise, Carolyn;
Varma, Vijayalakshmi;
Fang, Hong;
Ning, Baitang;
Hong, Huixiao;
Tong, Weida;
Kaput, Jim

Publication type:

Article

Proceedings of the 2010 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.

Published in:

2010

By:

Wren, Jonathan D.;
Kupfer, Doris M.;
Perkins, Edward J.;
Bridges, Susan;
Berleant, Daniel

Publication type:

Proceeding

Formal reasoning on qualitative models of coinfection of HIV and Tuberculosis and HAART therapy.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S1-S67

By:

Sorathiya, Anil;
Bracciali, Andrea;
Liò, Pietro

Publication type:

Article

HORI: a web server to compute Higher Order Residue Interactions in protein structures.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S1-S24

By:

Sundaramurthy, Pandurangan;
Shameer, Khader;
Sreenivasan, Raashi;
Gakkhar, Sunita;
Sowdhamini, Ramanathan

Publication type:

Article