Works about COMPUTATIONAL biology

Results: 5000

Nobel Prize in Chemistry 2024.

Published in:

Resonance: Journal of Science Education, 2025, v. 30, n. 5, p. 649, doi. 10.1007/s12045-025-1804-3

By:

Karmakar, Tarak

Publication type:

Article

RABiTPy: an open-source Python software for rapid, AI-powered bacterial tracking and analysis.

Published in:

BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06145-w

By:

Sen, Samyabrata;
Vairagare, Indraneel;
Gosai, Jitendrapuri;
Shrivastava, Abhishek

Publication type:

Article

In silico analysis of IL7RA missense mutations in lung, breast and skin cancers.

Published in:

Trakya University Journal of Natural Sciences, 2025, v. 26, n. 1, p. 9, doi. 10.23902/trkjnat.1545678

By:

Keskin, Zeynep Tokcaer

Publication type:

Article

Unraveling the Hsp70-ROS-autophagy axis in pentachlorophenol-challenged lung and liver epithelial cells.

Published in:

Archives of Toxicology, 2025, v. 99, n. 5, p. 2039, doi. 10.1007/s00204-025-03983-8

By:

Thota, S.;
Begum, R.;
Mutyala, D.;
Bidarimath, N.;
Thakur, M.;
Sarkar, B.;
Morehouse, J.;
Yang, S.;
Deb, P. K.;
Dorsey, W.;
Batra, S.

Publication type:

Article

ZC3H12D gene expression exhibits dual effects on the development and progression of lung adenocarcinoma.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-02163-z

By:

Zheng, Yuansi;
Zhang, Yuhuan;
Li, Jieyi;
Su, Ying

Publication type:

Article

Gradient matching accelerates mixed-effects inference for biochemical networks Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf154

By:

Oppen, Yulan B van;
Milias-Argeitis, Andreas

Publication type:

Article

The NF-κB signaling network in the life of T cells.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1559494

By:

Daniels, Mark A.;
Teixeiro, Emma

Publication type:

Article

Editorial: Targeting neuroinflammation for novel therapeutics in neurodegenerative diseases.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1602495

By:

Khanal, Pukar;
Chikhale, Rupesh;
Machhi, Jatin

Publication type:

Article

Structural And Functional Insights into EGFR And EGFRvIII Using Computational Modelling and Docking.

Published in:

International Journal of High School Research, 2025, v. 7, n. 3, p. 12, doi. 10.36838/v7i3.3

By:

Manaswi, Atreya

Publication type:

Article

IKZF1 as a potential therapeutic target for dendritic cell-mediated immunotherapy in IgA nephropathy.

Published in:

Cell Communication & Signaling, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12964-025-02196-x

By:

Peng, Fei;
Sheng, Chunjia;
He, Jiayi;
Zhou, Yena;
Qu, Yilun;
Duan, Shuwei;
Zhao, Yinghua;
Xia, Jikai;
Wu, Jie;
Cai, Guangyan;
Wu, Lingling;
Zhang, Chuyue;
Chen, Xiangmei

Publication type:

Article

Exact and Heuristic Solution Approaches for the Cluster Deletion Problem on General Graphs.

Published in:

Networks, 2025, v. 85, n. 4, p. 351, doi. 10.1002/net.22267

By:

Ambrosio, Giuseppe;
Cerulli, Raffaele;
Serra, Domenico;
Sorgente, Carmine;
Vaccaro, Ugo

Publication type:

Article

Shorter Note.

Published in:

American Fern Journal, 2024, v. 114, n. 4, p. 334, doi. 10.1640/0002-8444-114.4.332

By:

Song, Michael J.;
Pirro, Stacy;
Lahmeyer, Sean;
Kyle, Kealohilani;
White, Megan

Publication type:

Article

Negative Autoregulation by FAS Mediates Robust Fetal Erythropoiesis.

Published in:

PLoS Biology, 2007, v. 5, n. 10, p. e252, doi. 10.1371/journal.pbio.0050252

By:

Socolovsky, Merav;
Murell, Michael;
Ying Liu;
Pop, Ramona;
Porpiglia, Ermelinda;
Levchenko, Andre

Publication type:

Article

Just a Few Computational Principles Generate a Realistic Model of the Brain's Visual System.

Published in:

PLoS Biology, 2006, v. 4, n. 5, p. e161, doi. 10.1371/journal.pbio.0040161

By:

Gross, Liza

Publication type:

Article

Author index Volume 22 (2024).

Published in:: Journal of Bioinformatics & Computational Biology, 2024, v. 22, n. 6, p. 1, doi. 10.1142/S0219720024990014
Publication type:: Article

How much can ChatGPT really help computational biologists in programming?

Published in:

Journal of Bioinformatics & Computational Biology, 2024, v. 22, n. 2, p. 1, doi. 10.1142/S021972002471001X

By:

Rahman, Chowdhury Rafeed;
Wong, Limsoon

Publication type:

Article

Author Index Volume 21 (2023).

Published in:: Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 6, p. 1, doi. 10.1142/S0219720023990019
Publication type:: Article

Overlapping group screening for binary cancer classification with TCGA high-dimensional genomic data.

Published in:

Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 3, p. 1, doi. 10.1142/S0219720023500130

By:

Wang, Jie-Huei;
Chen, Yi-Hau

Publication type:

Article

Introduction to Selected Papers from InCoB 2021.

Published in:: 2022
Publication type:: Editorial

Author Index Volume 19 (2021).

Published in:: Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1142/S0219720021990018
Publication type:: Article

Introduction to the Special Issue of the 18th Annual International RECOMB Satellite Workshop on Comparative Genomics.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1142/S0219720021020030

By:

Williams, Rohan B. H.;
Zhang, Louxin

Publication type:

Article

Impacts of high-quality public data: Special issue on integrating public and in-house biomedical data.

Published in:

2021

By:

Zhou, Fengfeng;
Duan, Meiyu

Publication type:

Editorial

Introduction to the JBCB Special Issue on Selected Papers from BICOB-2020.

Published in:

2021

By:

Eulenstein, Oliver;
Ding, Qin;
Al-Mubaid, Hisham

Publication type:

Editorial

EasyAmber: A comprehensive toolbox to automate the molecular dynamics simulation of proteins.

Published in:

Journal of Bioinformatics & Computational Biology, 2020, v. 18, n. 6, p. N.PAG, doi. 10.1142/S0219720020400119

By:

Suplatov, Dmitry;
Sharapova, Yana;
Švedas, Vytas

Publication type:

Article

Denoising Protein–Protein interaction network via variational graph auto-encoder for protein complex detection.

Published in:

Journal of Bioinformatics & Computational Biology, 2020, v. 18, n. 3, p. N.PAG, doi. 10.1142/S0219720020400107

By:

Yao, Heng;
Guan, Jihong;
Liu, Tianying

Publication type:

Article

BENIN: Biologically enhanced network inference.

Published in:

Journal of Bioinformatics & Computational Biology, 2020, v. 18, n. 3, p. N.PAG, doi. 10.1142/S0219720020400077

By:

Wonkap, Stephanie Kamgnia;
Butler, Gregory

Publication type:

Article

Introduction to the JBCB special issue on CBC 2019.

Published in:

2020

By:

Zhou, Shuigeng

Publication type:

Editorial

Introduction to the JBCB special issue on CSBio 2019.

Published in:

2020

By:

De Maria, Elisabetta;
Magnin, Morgan

Publication type:

Editorial

Sorting permutations by fragmentation-weighted operations.

Published in:

Journal of Bioinformatics & Computational Biology, 2020, v. 18, n. 2, p. N.PAG, doi. 10.1142/S0219720020500067

By:

Alexandrino, Alexsandro Oliveira;
Lintzmayer, Carla Negri;
Dias, Zanoni

Publication type:

Article

Foreword: Special Issue for the 2019 International Conference on Bioinformatics and Computational Biology (BICOB-2019).

Published in:

2019

By:

Ding, Qin;
Eulenstein, Oliver;
Al-Mubaid, Hisham

Publication type:

Editorial

Introduction to JBCB Special Issue on BIOINFORMATICS 2019.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 5, p. N.PAG, doi. 10.1142/S0219720019020037

By:

Elisabetta, De Maria

Publication type:

Article

Selected Papers from the International Workshop on Cancer Bioinformatics and Intelligent Medicine (CBIM2018).

Published in:

2019

By:

Chu, Yen-Wei;
Lee, Yu Hong

Publication type:

Editorial

Foreword.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 6, p. -1, doi. 10.1142/S0219720017020048

By:

Eulenstein, Oliver;
Ding, Qin;
Al-Mubaid, Hisham

Publication type:

Article

PAcluster: Clustering polyadenylation site data using canonical correlation analysis.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 5, p. -1, doi. 10.1142/S0219720017500184

By:

Ji, Guoli;
Lin, Qianmin;
Long, Yuqi;
Ye, Congting;
Ye, Wenbin;
Wu, Xiaohui

Publication type:

Article

Selected Papers from the 16th International Conference on Bioinformatics (InCoB 2017).

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 5, p. -1, doi. 10.1142/S0219720017020036

By:

Akutsu, Tatsuya

Publication type:

Article

Introduction to selected papers from the 8th International Conference on Bioinformatics and Computational Biology (BICOB 2016).

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 3, p. -1, doi. 10.1142/S0219720017020024

By:

Haspel, Nurit;
Ioerger, Thomas;
Al-Mubaid, Hisham

Publication type:

Article

Editorial - Bioinformatics development at the BGRS\SB conference series: 10th anniversary.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 2, p. -1, doi. 10.1142/S0219720017020012

By:

Orlov, Yuriy L.;
Kolchanov, Nikolay A.;
Hofestädt, Ralf;
Wong, Limsoon

Publication type:

Article

Introduction to the selected papers from the 7th International Conference on Bioinformatics and Computational Biology (BICoB 2015).

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 3, p. -1, doi. 10.1142/S0219720016020029

By:

Saeed, Fahad;
Haspel, Nurit;
Al-Mubaid, Hisham

Publication type:

Article

Parallel workflow manager for non-parallel bioinformatic applications to solve large-scale biological problems on a supercomputer.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 2, p. -1, doi. 10.1142/S0219720016410080

By:

Suplatov, Dmitry;
Popova, Nina;
Zhumatiy, Sergey;
Voevodin, Vladimir;
Švedas, Vytas

Publication type:

Article

Preface to selected papers from the 6th International Conference on Computational Systems-Biology and Bioinformatics (CSBio2015).

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 1, p. -1, doi. 10.1142/S0219720016020017

By:

Kittichotirat, Weerayuth;
Engchuan, Worrawat;
Vongsangnak, Wanwipa;
Meechai, Asawin

Publication type:

Article

A hybrid model of cell cycle in mammals.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 1, p. -1, doi. 10.1142/S0219720016400011

By:

Behaegel, Jonathan;
Comet, Jean-Paul;
Bernot, Gilles;
Cornillon, Emilien;
Delaunay, Franck

Publication type:

Article

SAMSVM: A tool for misalignment filtration of SAM-format sequences with support vector machine.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 6, p. 1, doi. 10.1142/S0219720015500250

By:

Yang, Jianfeng;
Ding, Xiaofan;
Sun, Xing;
Tsang, Shui-Ying;
Xue, Hong

Publication type:

Article

Explore the hidden treasure in protein-protein interaction networks - An iterative model for predicting protein functions.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 5, p. -1, doi. 10.1142/S0219720015500262

By:

Wang, Derui;
Hou, Jingyu

Publication type:

Article

EnzDP: Improved enzyme annotation for metabolic network reconstruction based on domain composition profiles.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 5, p. -1, doi. 10.1142/S0219720015430039

By:

Nguyen, Nam-Ninh;
Srihari, Sriganesh;
Leong, Hon Wai;
Chong, Ket-Fah

Publication type:

Article

A novel Multi-Agent Ada-Boost algorithm for predicting protein structural class with the information of protein secondary structure.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 5, p. -1, doi. 10.1142/S0219720015500225

By:

Fan, Ming;
Zheng, Bin;
Li, Lihua

Publication type:

Article

The study of unfoldable self-avoiding walks - Application to protein structure prediction software.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 4, p. -1, doi. 10.1142/S0219720015500092

By:

Guyeux, Christophe;
Nicod, Jean-Marc;
Philippe, Laurent;
Bahi, Jacques M.

Publication type:

Article

Identifying human microRNA-disease associations by a new diffusion-based method.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 4, p. -1, doi. 10.1142/S0219720015500146

By:

Liao, Bo;
Ding, Sumei;
Chen, Haowen;
Li, Zejun;
Cai, Lijun

Publication type:

Article

John Wooley and JBCB.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 4, p. -1, doi. 10.1142/S0219720015010015

By:

Li, Ming;
Wong, Limsoon

Publication type:

Article

Resolving the multiple sequence alignment problem using biogeography-based optimization with multiple populations.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 4, p. -1, doi. 10.1142/S021972001550016X

By:

Zemali, El-Amine;
Boukra, Abdelmadjid

Publication type:

Article

Multiple seeds sensitivity using a single seed with threshold.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 4, p. -1, doi. 10.1142/S0219720015500110

By:

Egidi, Lavinia;
Manzini, Giovanni

Publication type:

Article