Works about COMPARATIVE genomics

Results: 4344

Mycobacteroides abscessus subspecies: a comparative genomic analysis reveals unique metabolic activities and drug resistance patterns.

Published in:

BMC Microbiology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12866-025-04010-7

By:

Wang, Xiaoyu;
Dai, Yongdong;
Wang, Xiao;
Li, Lingfei;
Feng, Yanhai;
Liu, Shunying;
Kou, Zhenyu;
Wang, Liang;
Wang, Fangjie;
Chen, Yaokai;
Lei, Xia

Publication type:

Article

Chromosome-scale whole genome assembly and annotation of the Jamaican field cricket Gryllus assimilis.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05197-0

By:

Ito, Yuki;
Sanno, Ryuto;
Ashikari, Seiya;
Yura, Kei;
Asahi, Toru;
Ylla, Guillem;
Kataoka, Kosuke

Publication type:

Article

MAFin: motif detection in multiple alignment files Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf125

By:

Patsakis, Michail;
Provatas, Kimonas;
Baltoumas, Fotis A;
Chantzi, Nikol;
Mouratidis, Ioannis;
Pavlopoulos, Georgios A;
Georgakopoulos-Soares, Ilias

Publication type:

Article

Nodules-associated Klebsiella oxytoca complex: genomic insights into plant growth promotion and health risk assessment.

Published in:

BMC Microbiology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12866-025-04002-7

By:

Youseif, Sameh H.;
El-Megeed, Fayrouz H. Abd;
Soliman, May S.;
Ageez, Amr;
Mohamed, Akram H.;
Ali, Saher A.;
El-Kholy, Amani A.

Publication type:

Article

Genetic outlook of Colistin resistant Salmonella enterica Serovar Typhimurium recovered from Poultry-Environment Interface: A One Health Standpoint.

Published in:

Pakistan Veterinary Journal, 2025, v. 45, n. 1, p. 246, doi. 10.29261/pakvetj/2025.118

By:

Mahmood, Sara;
Rasoo, Muhammad Hidayat;
Khurshid, Mohsin;
Aslam, Bilal

Publication type:

Article

Complete Chloroplast Genome Analysis of Casearia kurzii : Gene Loss at the IR Boundary and Monophyletic Evolution Within Casearia.

Published in:

Plants (2223-7747), 2025, v. 14, n. 9, p. 1356, doi. 10.3390/plants14091356

By:

Yan, Kan;
Li, Wandi;
Sun, Chao;
Lu, Xin;
Zhou, Xueqiong;
Wang, Youyou;
Tian, Yongqiang

Publication type:

Article

Retraction Note: Genome assembly of M. spongiola and comparative genomics of the genus Morchella provide initial insights into taxonomy and adaptive evolution.

Published in:

2025

By:

Meng, Qing;
Xie, Zhanling;
Xu, Hongyan;
Guo, Jing;
Peng, Qingqing;
Li, Yanyan;
Yang, Jiabao;
Dong, Deyu;
Gao, Taizhen;
Zhang, Fan

Publication type:

Correction Notice

Genomic Insights into Fertilization: Tracing PLCZ1 Orthologs Across Amphibian Lineages.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 4, p. 1, doi. 10.1093/gbe/evaf052

By:

Bainbridge, Rachel E;
Rosenbaum, Joel C;
Sau, Paushaly;
Carlson, Anne E

Publication type:

Article

An Atypical Kappa‐Class Chaperone‐Usher Fimbriae of a Human Enterotoxigenic Escherichia coli Strain Shows Multi‐Host Adherence and Distinct Phylogenetic Feature.

Published in:

Microbiology & Immunology, 2025, v. 69, n. 5, p. 270, doi. 10.1111/1348-0421.13208

By:

Inoue, Hiharu;
Tanimoto, Yoshihiko;
Zheng, Dongming;
Ban‐Furukawa, Erika;
Inoue, Miyoko;
Omori, Yuko;
Yamaguchi, Yoshihiro;
Tachibana, Taro;
Aso, Hisashi;
Zhang, Weiping;
Kage‐Nakadai, Eriko;
Nishikawa, Yoshikazu;
Wada, Takayuki

Publication type:

Article

Functional and Pangenomic Exploration of Roc Two‐Component Regulatory Systems Identifies Novel Players Across Pseudomonas Species.

Published in:

Molecular Microbiology, 2025, v. 123, n. 5, p. 439, doi. 10.1111/mmi.15357

By:

Simon, Victor;
Trouillon, Julian;
Attrée, Ina;
Elsen, Sylvie

Publication type:

Article

Localized Tissue-Specific Gene Expression and Gene Duplications are Important Sources of Social Morph Differences in a Social Bumblebee.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 4, p. 1, doi. 10.1093/molbev/msaf063

By:

Xu, Hongfei;
Colgan, Thomas J

Publication type:

Article

Sexually transmitted diseases putative drug target database: A comprehensive database of putative drug targets of pathogens identified by comparative genomics.

Published in:

Indian Journal of Pharmacology, 2013, v. 45, n. 5, p. 434, doi. 10.4103/0253-7613.117719

By:

Malipatil, Vijayakumari;
Madagi, Shivkumar;
Bhattacharjee, Biplab

Publication type:

Article

Introduction to the Special Issue of the 18th Annual International RECOMB Satellite Workshop on Comparative Genomics.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1142/S0219720021020030

By:

Williams, Rohan B. H.;
Zhang, Louxin

Publication type:

Article

A 2-approximation algorithm for the contig-based genomic scaffold filling problem.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 6, p. N.PAG, doi. 10.1142/S0219720018500221

By:

Jiang, Haitao;
Qingge, Letu;
Zhu, Daming;
Zhu, Binhai

Publication type:

Article

Comparative analysis of probiotic bacteria based on a new definition of core genome.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 3, p. N.PAG, doi. 10.1142/S0219720018400127

By:

Satti, Maria;
Tanizawa, Yasuhiro;
Endo, Akihito;
Arita, Masanori

Publication type:

Article

Introduction to Papers Selected from MCCMB'17.

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 2, p. -1, doi. 10.1142/S021972001802002X

By:

Gelfand, Mikhail

Publication type:

Article

REPRESENTING A SET OF RECONCILIATIONS IN A COMPACT WAY.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 2, p. 1, doi. 10.1142/S0219720012500254

By:

SCORNAVACCA, CELINE;
PAPROTNY, WOJCIECH;
BERRY, VINCENT;
RANWEZ, VINCENT

Publication type:

Article

ANVAYA:: A WORKFLOWS ENVIRONMENT FOR AUTOMATED GENOME ANALYSIS.

Published in:

Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 4, p. 1250006-1, doi. 10.1142/S0219720012500060

By:

LIMAYE, BHAKTI;
BANERJEE, RUMA;
DATTA, AVIK;
INAMDAR, HARSHAL;
VATS, PANKAJ;
DAHALE, SONAL;
BHANDARI, ALOK;
RAMAKRISHNAN, E. P.;
TUPAKULA, RAJNIKANTH;
MALVIYA, SANDEEP;
BAYASKAR, AVINASH;
GADHARI, RENU;
JAIN, SANKALP;
GAVANE, VIVEK;
MAHAJAN, RASHMI;
SUNITHA, K;
JOSHI, RAJENDRA

Publication type:

Article

KpsS1 Mediates the Glycosylation of Pseudaminic Acid in Acinetobacter Baumannii.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 41, p. 1, doi. 10.1002/chem.202400703

By:

Cheung, Yan Chu;
Guo, Xing;
Yang, Xuemei;
Wei, Ruohan;
Chan, Edward Waichi;
Li, Xuechen;
Chen, Sheng

Publication type:

Article

Phylogenetic analysis and molecular signatures defining a monophyletic clade of heterocystous cyanobacteria and identifying its closest relatives.

Published in:

Photosynthesis Research, 2014, v. 122, n. 2, p. 171, doi. 10.1007/s11120-014-0020-x

By:

Howard-Azzeh, Mohammad;
Shamseer, Larissa;
Schellhorn, Herb;
Gupta, Radhey

Publication type:

Article

The GreenCut: re-evaluation of physiological role of previously studied proteins and potential novel protein functions.

Published in:

Photosynthesis Research, 2013, v. 116, n. 2/3, p. 427, doi. 10.1007/s11120-013-9882-6

By:

Heinnickel, Mark;
Grossman, Arthur

Publication type:

Article

Application of comparative genomics in developing markers tightly linked to the Pm- 2F gene for powdery mildew resistance in melon ( Cucumis melo L.).

Published in:

Euphytica, 2013, v. 190, n. 2, p. 157, doi. 10.1007/s10681-012-0828-4

By:

Zhang, Chunqiu;
Ren, Yi;
Guo, Shaogui;
Zhang, Haiying;
Gong, Guoyi;
Du, Yongchen;
Xu, Yong

Publication type:

Article

Integrated bioinformatics based subtractive genomics approach to decipher the therapeutic function of hypothetical proteins from Salmonella typhi XDR H-58 strain.

Published in:

Biotechnology Letters, 2022, v. 44, n. 2, p. 279, doi. 10.1007/s10529-021-03219-6

By:

Khan, Kanwal;
Uddin, Reaz

Publication type:

Article

Comparative transcriptome analysis of genomic region deletion strain with enhanced l-tyrosine production in Saccharomyces cerevisiae.

Published in:

Biotechnology Letters, 2020, v. 42, n. 3, p. 453, doi. 10.1007/s10529-019-02784-1

By:

Wu, Yuzhen;
Cai, Miao;
Song, Xiaofei;
Li, Yuanzi;
Wang, Hesuiyuan;
Mao, Jiwei;
Liu, Quanli;
Xu, Haijin;
Qiao, Mingqiang

Publication type:

Article

Nonomuraea shaanxiensis sp. nov., a novel actinomycete isolated from a soil sample.

Published in:

Antonie van Leeuwenhoek, 2014, v. 105, n. 1, p. 57, doi. 10.1007/s10482-013-0052-9

By:

Zhang, Yuejing;
Zhao, Junwei;
Liu, Chongxi;
Shen, Yue;
Jia, Feiyu;
Wang, Xiangjing;
Xiang, Wensheng

Publication type:

Article

Phylogenomics and molecular signatures for the order Neisseriales: proposal for division of the order Neisseriales into the emended family Neisseriaceae and Chromobacteriaceae fam. nov.

Published in:

Antonie van Leeuwenhoek, 2013, v. 104, n. 1, p. 1, doi. 10.1007/s10482-013-9920-6

By:

Adeolu, Mobolaji;
Gupta, Radhey

Publication type:

Article

A global analysis of adaptive evolution of operons in cyanobacteria.

Published in:

Antonie van Leeuwenhoek, 2013, v. 103, n. 2, p. 331, doi. 10.1007/s10482-012-9813-0

By:

Memon, Danish;
Singh, Abhay;
Pakrasi, Himadri;
Wangikar, Pramod

Publication type:

Article

Comparative Genomics of Pesticide-Degrading Enterococcus Symbionts of Spodoptera frugiperda (Lepidoptera: Noctuidae) Leads to the Identification of Two New Species and the Reappraisal of Insect-Associated Enterococcus Species.

Published in:

Microbial Ecology, 2023, v. 86, n. 4, p. 2583, doi. 10.1007/s00248-023-02264-0

By:

Gomes, Ana Flávia Freitas;
de Almeida, Luís Gustavo;
Cônsoli, Fernando Luis

Publication type:

Article

Comparative Genomics Reveal the High Conservation and Scarce Distribution of Nitrogen Fixation nif Genes in the Plant-Associated Genus Herbaspirillum.

Published in:

Microbial Ecology, 2023, v. 86, n. 1, p. 563, doi. 10.1007/s00248-022-02084-8

By:

Pedrolo, Ana Marina;
Matteoli, Filipe Pereira;
Soares, Cláudio Roberto Fônseca Sousa;
Arisi, Ana Carolina Maisonnave

Publication type:

Article

Genome Analysis and Genomic Comparison of the Novel Species Arthrobacter ipsi Reveal Its Potential Protective Role in Its Bark Beetle Host.

Published in:

Microbial Ecology, 2021, v. 81, n. 2, p. 471, doi. 10.1007/s00248-020-01593-8

By:

González-Dominici, Lihuén Iraí;
Saati-Santamaría, Zaki;
García-Fraile, Paula

Publication type:

Article

Soil Acidobacteria Strain AB23 Resistance to Oxidative Stress Through Production of Carotenoids.

Published in:

Microbial Ecology, 2021, v. 81, n. 1, p. 169, doi. 10.1007/s00248-020-01548-z

By:

Pinto, Otávio Henrique Bezerra;
Costa, Flávio Silva;
Rodrigues, Gisele Regina;
da Costa, Rosiane Andrade;
da Rocha Fernandes, Gabriel;
Júnior, Osmindo Rodrigues Pires;
Barreto, Cristine Chaves

Publication type:

Article

Highly Transferable pAQU-Related Plasmids Encoding Multidrug Resistance Are Widespread in the Human and Fish Pathogen Photobacterium damselae subsp. damselae in Aquaculture Areas in the Black Sea.

Published in:

Microbial Ecology, 2020, v. 80, n. 3, p. 507, doi. 10.1007/s00248-020-01519-4

By:

Vences, Ana;
Abushattal, Saqr;
Matanza, Xosé M.;
Dubert, Javier;
Uzun, Ecren;
Ogut, Hamdi;
Osorio, Carlos R.

Publication type:

Article

Ecogenomics of the Marine Benthic Filamentous Cyanobacterium Adonisia.

Published in:

Microbial Ecology, 2020, v. 80, n. 2, p. 249, doi. 10.1007/s00248-019-01480-x

By:

Walter, Juline M.;
Coutinho, Felipe H.;
Leomil, Luciana;
Hargreaves, Paulo I.;
Campeão, Mariana E.;
Vieira, Verônica V.;
Silva, Beatriz S.;
Fistarol, Giovana O.;
Salomon, Paulo S.;
Sawabe, Tomoo;
Mino, Sayaka;
Hosokawa, Masashi;
Miyashita, Hideaki;
Maruyama, Fumito;
van Verk, Marcel C.;
Dutilh, Bas E.;
Thompson, Cristiane C.;
Thompson, Fabiano L.

Publication type:

Article

Comparative Genomics, Siderophore Production, and Iron Scavenging Potential of Root Zone Soil Bacteria Isolated from 'Concord' Grape Vineyards.

Published in:

Microbial Ecology, 2019, v. 78, n. 3, p. 699, doi. 10.1007/s00248-019-01324-8

By:

Lewis, Ricky W.;
Islam, Anjuman;
Opdahl, Lee;
Davenport, Joan R.;
Sullivan, Tarah S.

Publication type:

Article

Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes.

Published in:

Microbial Ecology, 2018, v. 76, n. 3, p. 801, doi. 10.1007/s00248-018-1155-7

By:

Cabal, Adriana;
Jun, Se-Ran;
Jenjaroenpun, Piroon;
Wanchai, Visanu;
Nookaew, Intawat;
Wongsurawat, Thidathip;
Burgess, Mary J.;
Kothari, Atul;
Wassenaar, Trudy M.;
Ussery, David W.

Publication type:

Article

Comparative Genomics of cpn60-Defined Enterococcus hirae Ecotypes and Relationship of Gene Content Differences to Competitive Fitness.

Published in:

Microbial Ecology, 2016, v. 72, n. 4, p. 917, doi. 10.1007/s00248-015-0708-2

By:

Katyal, Isha;
Chaban, Bonnie;
Hill, Janet

Publication type:

Article

Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes.

Published in:

Microbial Ecology, 2015, v. 70, n. 3, p. 819, doi. 10.1007/s00248-015-0603-x

By:

Zakharevich, Natalia;
Averina, Olga;
Klimina, Ksenia;
Kudryavtseva, Anna;
Kasianov, Artem;
Makeev, Vsevolod;
Danilenko, Valery

Publication type:

Article

Metabolic Characteristics of a Glycogen-Accumulating Organism in Defluviicoccus Cluster II Revealed by Comparative Genomics.

Published in:

Microbial Ecology, 2014, v. 68, n. 4, p. 716, doi. 10.1007/s00248-014-0440-3

By:

Wang, Zhiping;
Guo, Feng;
Mao, Yanping;
Xia, Yu;
Zhang, Tong

Publication type:

Article

Comparative Genomics of Bifidobacterium, Lactobacillus and Related Probiotic Genera.

Published in:

Microbial Ecology, 2012, v. 63, n. 3, p. 651, doi. 10.1007/s00248-011-9948-y

By:

Lukjancenko, Oksana;
Ussery, David;
Wassenaar, Trudy

Publication type:

Article

Revisiting the sequencing of the first tree genome: Populus trichocarpa.

Published in:

2013

By:

Wullschleger, Stan D.;
Weston, D. J.;
DiFazio, S. P.;
Tuskan, G. A.

Publication type:

Opinion

Correlation between the Colony Phenotype and Amino Acid Sequence of the Variable Vaa Antigen in Clinical Isolates of Mycoplasma hominis.

Published in:

Bulletin of Experimental Biology & Medicine, 2024, v. 177, n. 1, p. 79, doi. 10.1007/s10517-024-06135-7

By:

Galyamina, M. A.;
Sikamov, K. V.;
Urazaeva, D. R.;
Avshalumov, A. S.;
Mikhaylycheva, M. V.;
Pobeguts, O. V.;
Gorbachev, A. Yu.

Publication type:

Article

Machine learning and comparative genomics approaches for the discovery of xylose transporters in yeast.

Published in:

Biotechnology for Biofuels & Bioproducts, 2022, v. 15, n. 1, p. 1, doi. 10.1186/s13068-022-02153-7

By:

Fiamenghi, Mateus Bernabe;
Bueno, João Gabriel Ribeiro;
Camargo, Antônio Pedro;
Borelli, Guilherme;
Carazzolle, Marcelo Falsarella;
Pereira, Gonçalo Amarante Guimarães;
dos Santos, Leandro Vieira;
José, Juliana

Publication type:

Article

Novel genomic features in entomopathogenic fungus Beauveria bassiana ILB308: accessory genomic regions and putative virulence genes involved in the infection process of soybean pest Piezodorus guildinii.

Published in:

Pest Management Science, 2025, v. 81, n. 4, p. 2323, doi. 10.1002/ps.8631

By:

Oberti, Héctor;
Sessa, Lucia;
Oliveira‐Rizzo, Carolina;
Di Paolo, Andrés;
Sanchez‐Vallet, Andrea;
Seidl, Michael F.;
Abreo, Eduardo

Publication type:

Article

Chromosome‐level genome assembly and comparative genomics shed light on Helicoverpa assulta ecology and pest management.

Published in:

Pest Management Science, 2024, v. 80, n. 10, p. 5440, doi. 10.1002/ps.8273

By:

Kim, Juil;
Rahman, Md‐Mafizur;
Han, Changhee;
Shin, Jiyeong;
Ahn, Seung‐Joon

Publication type:

Article

Identification of pine wood nematode (Bursaphelenchus xylophilus) loading response genes in Japanese pine sawyer (Monochamus alternatus) through comparative genomics and transcriptomics.

Published in:

Pest Management Science, 2024, v. 80, n. 8, p. 3873, doi. 10.1002/ps.8090

By:

Zou, Xiangying;
Jia, Jiayu;
Zhu, Tengfei;
Cai, Shouping;
He, Yiman;
Su, Shunde;
Fang, Yu;
Li, Jian;
Lin, Guifang;
Su, Jun

Publication type:

Article

Pathogenicity analysis and comparative genomics reveal the different infection strategies between the generalist Metarhizium anisopliae and the specialist Metarhizium acridum.

Published in:

Pest Management Science, 2024, v. 80, n. 2, p. 820, doi. 10.1002/ps.7812

By:

Du, Yanru;
Li, Jun;
Chen, Shaopeng;
Xia, Yuxian;
Jin, Kai

Publication type:

Article

A one‐step multiplex PCR assay for the detection and differentiation of four species of Clarireedia causing dollar spot on turfgrass.

Published in:

Pest Management Science, 2023, v. 79, n. 3, p. 1069, doi. 10.1002/ps.7276

By:

Zhang, Huangwei;
Liu, Jun;
Dong, Yinglu;
Hu, Jian;
Lamour, Kurt;
Yang, Zhimin

Publication type:

Article

Comparative Genomics of Bifidobacterium animalis subsp. lactis Reveals Strain-Level Hyperdiversity, Carbohydrate Metabolism Adaptations, and CRISPR-Mediated Phage Immunity.

Published in:

Fermentation (Basel), 2025, v. 11, n. 4, p. 179, doi. 10.3390/fermentation11040179

By:

Can, Ozge;
Gumustop, Ismail;
Genel, Ibrahim;
Unver, Hulya;
Dertli, Enes;
Kurt, Ibrahim Cagri;
Ortakci, Fatih

Publication type:

Article

Comparative Transcriptome Analysis of Industrial and Laboratory Saccharomyces cerevisiae Strains after Sequential Stresses.

Published in:

Fermentation (Basel), 2024, v. 10, n. 8, p. 395, doi. 10.3390/fermentation10080395

By:

Costa, Ane Catarine Tosi;
Schneper, Lisa;
Russo, Mariano;
Fernandes, A. Alberto R.;
Broach, James R.;
Fernandes, Patricia M. B.

Publication type:

Article

Whole-Genome Sequencing of Lactiplantibacillus plantarum YY-112 and Investigation of Its Immune-Modulating Abilities In Vivo.

Published in:

Fermentation (Basel), 2023, v. 9, n. 12, p. 996, doi. 10.3390/fermentation9120996

By:

Luo, Mengfan;
Zhou, Wanyi;
Tao, Wenyang;
Xing, Jianrong;
Li, Jingrui;
Yang, Ying;
Guo, Yuxing

Publication type:

Article