Works matching DE "CIS-regulatory elements (Genetics)"

Results: 577

Are complex traits underpinned by polygenic molecular traits? A reflection on the complexity of gene expression Open Access.

Published in:

Plant & Cell Physiology, 2025, v. 66, n. 4, p. 444, doi. 10.1093/pcp/pcae140

By:

Hajheidari, Mohsen;
Sunyaev, Shamil;
Meaux, Juliette de

Publication type:

Article

Two independent regulatory mechanisms synergistically contribute to P450-mediated insecticide resistance in a lepidopteran pest, Spodoptera exigua.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02228-5

By:

Hu, Bo;
Zhang, Yuting;
Xing, Zhiping;
Chen, Xiangzhu;
Rao, Cong;
Liu, Kuitun;
Tan, Anjiang;
Su, Jianya

Publication type:

Article

Sequential construction of a model for modular gene expression control, applied to spatial patterning of the Drosophila gene hunchback.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 2, p. -1, doi. 10.1142/S0219720016410055

By:

Spirov, Alexander V.;
Myasnikova, Ekaterina M.;
Holloway, David M.

Publication type:

Article

Reduced translation efficiency due to novel splicing variants in 5′ untranslated region and identification of novel cis-regulatory elements in canine and human BRCA2.

Published in:

BMC Molecular & Cell Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12860-020-00336-4

By:

Yoshikawa, Yasunaga;
Kozuma, Hajime;
Morimatsu, Masami;
Sugawara, Kaori;
Orino, Koichi

Publication type:

Article

EFFECT OF MUTATION RESULTED FROM ERROR PRONE PCR ON THE STRENGTH OF PROMOTER ACTIVITY.

Published in:

Journal of Experimental Zoology India, 2019, v. 22, n. 2, p. 981

By:

Priyadarsini, Swagatika;
Nikhil, K. C.;
Ratta, Barkha;
Pashupathi, M.;
Behera, Parthasarathi;
Kumar, Ajay

Publication type:

Article

The Use of Whole-Mount In Situ Hybridization to Illustrate Gene Expression Regulation.

Published in:

Biochemistry & Molecular Biology Education, 2014, v. 42, n. 4, p. 339, doi. 10.1002/bmb.20807

By:

Llamusí, Beatriz;
Muñoz‐Soriano, Verónica;
Paricio, Nuria;
Artero, Rubén

Publication type:

Article

Genome-Wide Identification of the Rose SWEET Gene Family and Their Different Expression Profiles in Cold Response between Two Rose Species.

Published in:

Plants (2223-7747), 2023, v. 12, n. 7, p. 1474, doi. 10.3390/plants12071474

By:

Song, Xiangshang;
Kou, Yaping;
Duan, Mingao;
Feng, Bo;
Yu, Xiaoyun;
Jia, Ruidong;
Zhao, Xin;
Ge, Hong;
Yang, Shuhua

Publication type:

Article

Genome-Wide Identification and Structural Characterization of Growth-Regulating Factors (GRFs) in Actinida eriantha and Actinidia chinensis.

Published in:

Plants (2223-7747), 2022, v. 11, n. 13, p. 1633, doi. 10.3390/plants11131633

By:

Abid, Muhammad;
Wang, Zupeng;
Feng, Chen;
Luo, Juan;
Zhang, Yi;
Tu, Jing;
Cai, Xinxia;
Gao, Puxin

Publication type:

Article

Genome-Wide Identification, Phylogenetic and Expression Pattern Analysis of GATA Family Genes in Cucumber (Cucumis sativus L.).

Published in:

Plants (2223-7747), 2021, v. 10, n. 8, p. 1626, doi. 10.3390/plants10081626

By:

Zhang, Kaijing;
Jia, Li;
Yang, Dekun;
Hu, Yuchao;
Njogu, Martin Kagiki;
Wang, Panqiao;
Lu, Xiaomin;
Yan, Congsheng

Publication type:

Article

Genome-Wide In Silico Identification and Comparative Analysis of Dof Gene Family in Brassica napus.

Published in:

Plants (2223-7747), 2021, v. 10, n. 4, p. 709, doi. 10.3390/plants10040709

By:

Lohani, Neeta;
Babaei, Saeid;
Singh, Mohan B.;
Bhalla, Prem L.

Publication type:

Article

Genome-Wide Identification and Characterization of the CsFHY3/FAR1 Gene Family and Expression Analysis under Biotic and Abiotic Stresses in Tea Plants (Camellia sinensis).

Published in:

Plants (2223-7747), 2021, v. 10, n. 3, p. 570, doi. 10.3390/plants10030570

By:

Liu, Zhengjun;
An, Chuanjing;
Zhao, Yiqing;
Xiao, Yao;
Bao, Lu;
Gong, Chunmei;
Gao, Yuefang;
Molinier, Jean

Publication type:

Article

A Quarter Century History of ATML1 Gene Research.

Published in:

Plants (2223-7747), 2021, v. 10, n. 2, p. 290, doi. 10.3390/plants10020290

By:

Iida, Hiroyuki;
Takada, Shinobu;
Ueda, Minako

Publication type:

Article

Identification of Cis-Regulatory Sequences Controlling Pollen-Specific Expression of Hydroxyproline-Rich Glycoprotein Genes in Arabidopsis thaliana.

Published in:

Plants (2223-7747), 2020, v. 9, n. 12, p. 1751, doi. 10.3390/plants9121751

By:

Li, Yichao;
Mullin, Maxwell;
Zhang, Yingnan;
Drews, Frank;
Welch, Lonnie R.;
Showalter, Allan M.

Publication type:

Article

Genome-Wide Identification of WRKY Genes in Artemisia annua : Characterization of a Putative Ortholog of AtWRKY40.

Published in:

Plants (2223-7747), 2020, v. 9, n. 12, p. 1669, doi. 10.3390/plants9121669

By:

De Paolis, Angelo;
Caretto, Sofia;
Quarta, Angela;
Di Sansebastiano, Gian-Pietro;
Sbrocca, Irene;
Mita, Giovanni;
Frugis, Giovanna

Publication type:

Article

Unravelling Cotton Nonexpressor of Pathogenesis-Related 1(NPR1)-Like Genes Family: Evolutionary Analysis and Putative Role in Fiber Development and Defense Pathway.

Published in:

Plants (2223-7747), 2020, v. 9, n. 8, p. 999, doi. 10.3390/plants9080999

By:

Agarwal, Neha;
Srivastava, Rakesh;
Verma, Akash;
Rai, Krishan Mohan;
Singh, Babita;
Verma, Praveen Chandra

Publication type:

Article

Regulatory genome annotation of 33 insect species.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.96738

By:

Asma, Hasiba;
Tieke, Ellen;
Deem, Kevin D.;
Rahmat, Jabale;
Dong, Tiffany;
Xinbo Huang;
Yoshinori Tomoyasu;
Halfon, Marc S.

Publication type:

Article

Germline cis variant determines epigenetic regulation of the anti-cancer drug metabolism gene dihydropyrimidine dehydrogenase (DPYD).

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.94075

By:

Ting Zhang;
Ambrodji, Alisa;
Huixing Huang;
Bouchonville, Kelly J.;
Etheridge, Amy S.;
Schmidt, Remington E.;
Bembenek, Brianna M.;
Temesgen, Zoey B.;
Zhiquan Wang;
Innocenti, Federico;
Stroka, Deborah;
Diasio, Robert B.;
Largiadèr, Carlo R.;
Offer, Steven M.

Publication type:

Article

Cis-regulatory modes of Ultrabithorax inactivation in butterfly forewings.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.90846

By:

Tendolkar, Amruta;
Mazo-Vargas, Anyi;
Livraghi, Luca;
Hanly, Joseph J.;
Van Horne, Kelsey C.;
Gilbert, Lawrence E.;
Martin, Arnaud

Publication type:

Article

Deletion of conserved non‐coding sequences downstream from NKX2‐1: A novel disease‐causing mechanism for benign hereditary chorea.

Published in:

Molecular Genetics & Genomic Medicine, 2021, v. 9, n. 4, p. 1, doi. 10.1002/mgg3.1647

By:

Liao, Jun;
Coffman, Keith A.;
Locker, Joseph;
Padiath, Quasar S.;
Nmezi, Bruce;
Filipink, Robyn A.;
Hu, Jie;
Sathanoori, Malini;
Madan‐Khetarpal, Suneeta;
McGuire, Marianne;
Schreiber, Allison;
Moran, Rocio;
Friedman, Neil;
Hoffner, Lori;
Rajkovic, Aleksandar;
Yatsenko, Svetlana A.;
Surti, Urvashi

Publication type:

Article

Comparative Genome Analysis Reveals Cis -Regulatory Elements on Gene-Sized Chromosomes of Ciliated Protists.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.775646

By:

Zheng, Weibo;
Dou, Huan;
Li, Chao;
Al-Farraj, Saleh A.;
Byerly, Adam;
Stover, Naomi A.;
Song, Weibo;
Chen, Xiao;
Li, Lifang

Publication type:

Article

An improved method for rapid analysis of promoters using modified sonication-assisted transient assay.

Published in:

3 Biotech, 2018, v. 8, n. 4, p. 1, doi. 10.1007/s13205-018-1219-x

By:

Chauhan, Chetan;
Joshi, Gauri;
Chaudhary, Darshna;
Das, Sandip

Publication type:

Article

Haplotype-aware modeling of cis-regulatory effects highlights the gaps remaining in eQTL data.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-44710-8

By:

Ehsan, Nava;
Kotis, Bence M.;
Castel, Stephane E.;
Song, Eric J.;
Mancuso, Nicholas;
Mohammadi, Pejman

Publication type:

Article

Whole-genome analysis reveals distinct adaptation signatures to diverse environments in Chinese domestic pigs.

Published in:

Journal of Animal Science & Biotechnology, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s40104-024-01053-0

By:

Wang, Zhen;
Song, Bangmin;
Yao, Jianyu;
Li, Xingzheng;
Zhang, Yan;
Tang, Zhonglin;
Yi, Guoqiang

Publication type:

Article

SOX9 chromatin folding domains correlate with its real and putative distant cis -regulatory elements.

Published in:

Nucleus (1949-1034), 2017, v. 8, n. 2, p. 182, doi. 10.1080/19491034.2017.1279776

By:

Smyk, Marta;
Akdemir, Kadir Caner;
Stankiewicz, Paweł

Publication type:

Article

The DNAJ gene family in yerba mate (Ilex paraguariensis): genome-wide identification, structural characterization, orthology based classification and expression analysis.

Published in:

Rodriguésia, 2023, v. 74, p. 1, doi. 10.1590/2175-7860202374020

By:

Mabel Aguilera, Patricia;
Julio Debat, Humberto;
Lorena Castrillo, María;
Angel Bich, Gustavo;
Grabiele, Mauro

Publication type:

Article

Genome-wide identification and characterisation of long non-coding RNAs in two Chinese cattle breeds.

Published in:

Italian Journal of Animal Science, 2020, v. 19, n. 1, p. 383, doi. 10.1080/1828051X.2020.1735266

By:

Jia, Xianbo;
He, Yang;
Chen, Shi-Yi;
Wang, Jie;
Hu, Shenqiang;
Lai, Song-Jia

Publication type:

Article

Enhancers in Proboscis Monkey: A Primer.

Published in:

Pertanika Journal of Tropical Agricultural Science, 2019, v. 42, n. 1, p. 261

By:

Lim, Leonard Whye Kit;
Hung Hui Chung;
Yee Ling Chong;
Nung Kion Lee

Publication type:

Article

In-depth mining of single-cell transcriptome reveals the key immune-regulated loops in age-related macular degeneration.

Published in:

Frontiers in Molecular Neuroscience, 2023, p. 1, doi. 10.3389/fnmol.2023.1173123

By:

Wencan Wang;
Peng Lin;
Siyu Wang;
Guosi Zhang;
Chong Chen;
Xiaoyan Lu;
Youyuan Zhuang;
Jianzhong Su;
Hong Wang;
Liangde Xu

Publication type:

Article

Transcriptional networks of transient cell states during human prefrontal cortex development.

Published in:

Frontiers in Molecular Neuroscience, 2023, p. 1, doi. 10.3389/fnmol.2023.1126438

By:

Singh, Aditi;
Tiwari, Vijay K.

Publication type:

Article

Monocyte Subsets With High Osteoclastogenic Potential and Their Epigenetic Regulation Orchestrated by IRF8.

Published in:

Journal of Bone & Mineral Research, 2021, v. 36, n. 1, p. 199, doi. 10.1002/jbmr.4165

By:

Das, Amitabh;
Wang, Xiaobei;
Kang, Jessica;
Coulter, Alyssa;
Shetty, Amol C;
Bachu, Mahesh;
Brooks, Stephen R;
Dell'Orso, Stefania;
Foster, Brian L;
Fan, Xiaoxuan;
Ozato, Keiko;
Somerman, Martha J;
Thumbigere‐Math, Vivek

Publication type:

Article

Multiple Endocrine Neoplasia Type 1 (MEN1) 5′UTR Deletion, in MEN1 Family, Decreases Menin Expression.

Published in:

Journal of Bone & Mineral Research, 2021, v. 36, n. 1, p. 100, doi. 10.1002/jbmr.4156

By:

Kooblall, Kreepa G;
Boon, Hannah;
Cranston, Treena;
Stevenson, Mark;
Pagnamenta, Alistair T;
Rogers, Angela;
Grozinsky‐Glasberg, Simona;
Richardson, Tristan;
Flanagan, Daniel EH;
Taylor, Jenny C;
Lines, Kate E;
Thakker, Rajesh V

Publication type:

Article

Large-Scale Screening and Identification of Novel Pathogenic Staphylococcus aureus Genes Using a Silkworm Infection Model.

Published in:

2020

By:

Paudel, Atmika;
Hamamoto, Hiroshi;
Panthee, Suresh;
Matsumoto, Yasuhiko;
Sekimizu, Kazuhisa

Publication type:

journal article

Inferring mammalian tissue-specific regulatory conservation by predicting tissue-specific differences in open chromatin.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08450-7

By:

Kaplow, Irene M.;
Schäffer, Daniel E.;
Wirthlin, Morgan E.;
Lawler, Alyssa J.;
Brown, Ashley R.;
Kleyman, Michael;
Pfenning, Andreas R.

Publication type:

Article

Divergence of X-linked trans regulatory proteins and the misexpression of gene targets in sterile Drosophila pseudoobscura hybrids.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-021-08267-w

By:

Go, Alwyn C.;
Civetta, Alberto

Publication type:

Article

Genetic architecture of protein expression and its regulation in the mouse brain.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08168-y

By:

Erickson, Alyssa;
Zhou, Suiping;
Luo, Jie;
Li, Ling;
Huang, Xin;
Even, Zachary;
Huang, He;
Xu, Hai-Ming;
Peng, Junmin;
Lu, Lu;
Wang, Xusheng

Publication type:

Article

Genetic architecture of protein expression and its regulation in the mouse brain.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08168-y

By:

Erickson, Alyssa;
Zhou, Suiping;
Luo, Jie;
Li, Ling;
Huang, Xin;
Even, Zachary;
Huang, He;
Xu, Hai-Ming;
Peng, Junmin;
Lu, Lu;
Wang, Xusheng

Publication type:

Article

A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08057-4

By:

Bai, Yu;
Caussinus, Emmanuel;
Leo, Stefano;
Bosshardt, Fritz;
Myachina, Faina;
Rot, Gregor;
Robinson, Mark D.;
Lehner, Christian F.

Publication type:

Article

Identification and prediction of developmental enhancers in sea urchin embryos.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-07936-0

By:

Arenas-Mena, César;
Miljovska, Sofija;
Rice, Edward J.;
Gurges, Justin;
Shashikant, Tanvi;
Wang, Zihe;
Ercan, Sevinç;
Danko, Charles G.

Publication type:

Article

Dynamic enhancer transcription associates with reprogramming of immune genes during pattern triggered immunity in Arabidopsis.

Published in:

BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01362-8

By:

Zhang, Ying;
Tang, Meng;
Huang, Mengling;
Xie, Jiatao;
Cheng, Jiasen;
Fu, Yanping;
Jiang, Daohong;
Yu, Xiao;
Li, Bo

Publication type:

Article

Differential gene regulatory pattern in the human brain from schizophrenia using transcriptomic-causal network.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03753-6

By:

Yazdani, Akram;
Mendez-Giraldez, Raul;
Yazdani, Azam;
Kosorok, Michael R.;
Roussos, Panos

Publication type:

Article

MapGL: inferring evolutionary gain and loss of short genomic sequence features by phylogenetic maximum parsimony.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03742-9

By:

Diehl, Adam G.;
Boyle, Alan P.

Publication type:

Article

Enhancer prediction in the human genome by probabilistic modelling of the chromatin feature patterns.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03621-3

By:

Osmala, Maria;
Lähdesmäki, Harri

Publication type:

Article

fcScan: a versatile tool to cluster combinations of sites using genomic coordinates.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3536-4

By:

El-Kurdi, Abdullah;
Khalil, Ghiwa Ali;
Khazen, Georges;
Khoueiry, Pierre

Publication type:

Article

A pipeline to create predictive functional networks: application to the tumor progression of hepatocellular carcinoma.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-019-3316-1

By:

Folschette, Maxime;
Legagneux, Vincent;
Poret, Arnaud;
Chebouba, Lokmane;
Guziolowski, Carito;
Théret, Nathalie

Publication type:

Article

Learning causal networks using inducible transcription factors and transcriptome‐wide time series.

Published in:

Molecular Systems Biology, 2020, v. 16, n. 3, p. 1, doi. 10.15252/msb.20199174

By:

Hackett, Sean R;
Baltz, Edward A;
Coram, Marc;
Wranik, Bernd J;
Kim, Griffin;
Baker, Adam;
Fan, Minjie;
Hendrickson, David G;
Berndl, Marc;
McIsaac, R Scott

Publication type:

Article

Pervasive isoform-specific translational regulation via alternative transcription start sites in mammals.

Published in:

Molecular Systems Biology, 2016, v. 12, n. 7, p. n/a, doi. 10.15252/msb.20166941

By:

Wang, Xi;
Hou, Jingyi;
Quedenau, Claudia;
Chen, Wei

Publication type:

Article

Reorganization of 3D genome structure may contribute to gene regulatory evolution in primates.

Published in:

PLoS Genetics, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.pgen.1008278

By:

Eres, Ittai E.;
Luo, Kaixuan;
Hsiao, Chiaowen Joyce;
Blake, Lauren E.;
Gilad, Yoav

Publication type:

Article

Allele-specific expression elucidates cis-regulatory logic.

Published in:

PLoS Genetics, 2018, v. 14, n. 11, p. 1, doi. 10.1371/journal.pgen.1007690

By:

Delbare, Sofie Y. N.;
Clark, Andrew G.

Publication type:

Article

Immunomodulatory Gene-Splicing Dysregulation in Tumorigenesis: Unmasking the Complexity.

Published in:

Molecules, 2023, v. 28, n. 16, p. 5984, doi. 10.3390/molecules28165984

By:

Maebele, Lorraine Tshegofatso;
Mulaudzi, Thanyani Victor;
Yasasve, Madhavan;
Dlamini, Zodwa;
Damane, Botle Precious

Publication type:

Article

Targeted DNA Demethylation: Vectors, Effectors and Perspectives.

Published in:

Biomedicines, 2023, v. 11, n. 5, p. 1334, doi. 10.3390/biomedicines11051334

By:

Yano, Naohiro;
Fedulov, Alexey V.

Publication type:

Article