Works about CHROMATIN

Results: 5000

scNucMap: mapping the nucleosome landscapes at single-cell resolution Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf324

By:

Xiang, Qianming;
Lai, Binbin

Publication type:

Article

Centromeres in the thermotolerant yeast K. marxianus mediate attachment to a single microtubule.

Published in:

Chromosome Research, 2025, v. 33, n. 1, p. 1, doi. 10.1007/s10577-025-09772-4

By:

Barrero, Daniel J.;
Hedouin, Sabrine;
Mao, Yizi;
Asbury, Charles L.;
Stergachis, Andrew B.;
O'Toole, Eileen;
Biggins, Sue

Publication type:

Article

Quantifying conformational heterogeneity of 3D genome organization in fruit fly.

Published in:

PLoS ONE, 2025, v. 20, n. 7, p. 1, doi. 10.1371/journal.pone.0326927

By:

Mali, Samira;
Tolokh, Igor S.;
Cross, Erik;
Onufriev, Alexey V.

Publication type:

Article

The Link Between TGF‐β Signaling and Chromatin Dynamics Takes an Unexpected Path.

Published in:

BioEssays, 2025, v. 47, n. 7, p. 1, doi. 10.1002/bies.70013

By:

Mallo, Moises

Publication type:

Article

The hierarchical folding dynamics of topologically associating domains during early embryo development.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02259-y

By:

Bai, Xuemei;
Tang, Xiaohan;
Wang, Yuyang;
Yue, Shutong;
Xu, Xiang;
Hu, Pengzhen;
Xu, Jingxuan;
Li, Yaru;
Wang, Junting;
Tao, Huan;
Zheng, Yang;
Chen, Bijia;
Tian, Mengge;
Lin, Lin;
Wang, Ruiqing;
Sun, Yu;
Ren, Chao;
Bo, Xiaochen;
Li, Hao;
Chen, Hebing

Publication type:

Article

Spatial profiling of chromatin accessibility in formalin-fixed paraffin-embedded tissues.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60882-3

By:

Guo, Pengfei;
Chen, Yufan;
Mao, Liran;
Cardilla, Angelysia;
Lee, Chin Nien;
Cui, Yan;
Jin, Dengge;
Hua, Yucong;
Xu, Xiaowei;
Deng, Yanxiang

Publication type:

Article

MORC2 is a phosphorylation-dependent DNA compaction machine.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60751-z

By:

Tan, Winnie;
Park, Jeongveen;
Venugopal, Hariprasad;
Lou, Jieqiong;
Dias, Prabavi Shayana;
Baldoni, Pedro L.;
Moon, Kyoung-Wook;
Dite, Toby A.;
Keenan, Christine R.;
Gurzau, Alexandra D.;
Lee, Joonyoung;
Johanson, Timothy M.;
Leis, Andrew;
Yousef, Jumana;
Vaibhav, Vineet;
Dagley, Laura F.;
Ang, Ching-Seng;
Corso, Laura D.;
Davidovich, Chen;
Vervoort, Stephin J.

Publication type:

Article

DNA polymerase α/primase extraction from chromatin by VCP/p97 restricts ATR activation during unperturbed DNA replication.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60077-w

By:

Rodríguez-Acebes, Sara;
Martín-Rufo, Rodrigo;
Gómez-Moya, Alicia;
Churcher, Scott B.;
Fernández-Llorente, Alejandro;
de la Vega-Barranco, Guillermo;
Perona, Alejandra;
Oroz, Pilar;
Martín-Doncel, Elena;
Toledo, Luis Ignacio;
Méndez, Juan;
Lecona, Emilio

Publication type:

Article

Cytological features of small cell neuroendocrine carcinoma of the uterine cervix.

Published in:

Oncology Letters, 2025, v. 30, n. 2, p. N.PAG, doi. 10.3892/ol.2025.15147

By:

Odaka, Mayo;
Ishida, Mitsuaki;
Okanishi, Hiroyuki;
Tomiuka, Mari;
Ariga, Kozue;
Kataoka, Isako;
Uragami, Mayumi;
Deguchi, Chihiro;
Kohno, Naoto;
Ono, Shizuka;
Takeda, Reika;
Tanaka, Yoshimichi;
Tanaka, Tomohito;
Hirose, Yoshinobu

Publication type:

Article

Genome Mountaineering: Expanding Horizons of the 3D Genome for the Intrepid Evolutionary Adventurer Open Access.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 6, p. 1, doi. 10.1093/gbe/evaf113

By:

Mackay-Smith, Ava;
Wray, Gregory A

Publication type:

Article

Binding of Transcriptional Activator to Silent Loci Causes Their Detachment from the Nuclear Lamina in Drosophila Neurons and Salivary Gland Cells.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 12, p. 5793, doi. 10.3390/ijms26125793

By:

Simonov, Ruslan A.;
Olenkina, Oxana M.;
Nenasheva, Valentina V.;
Abramov, Yuri A.;
Lavrov, Sergey A.;
Fedotova, Anna A.;
Shevelyov, Yuri Y.

Publication type:

Article

The interplay between nucleoid organization and transcription in archaeal genomes.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 6, p. 333, doi. 10.1038/nrmicro3467

By:

Peeters, Eveline;
Driessen, Rosalie P. C.;
Werner, Finn;
Dame, Remus T.

Publication type:

Article

Viral infection: Tracking down HIV's hiding place.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 4, p. 186, doi. 10.1038/nrmicro3466

By:

Attar, Naomi

Publication type:

Article

Keeping it quiet: chromatin control of gammaherpesvirus latency.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 12, p. 863, doi. 10.1038/nrmicro3135

By:

Lieberman, Paul M.

Publication type:

Article

The Chromatin Assembly Factor 1 Promotes Rad51-Dependent Template Switches at Replication Forks by Counteracting D-Loop Disassembly by the RecQ-Type Helicase Rqh1.

Published in:

PLoS Biology, 2014, v. 12, n. 10, p. 1, doi. 10.1371/journal.pbio.1001968

By:

Pietrobon, Violena;
Fréon, Karine;
Hardy, Julien;
Costes, Audrey;
Iraqui, Ismail;
Ochsenbein, Françoise;
Lambert, Sarah A.E.

Publication type:

Article

Pre-B Cell Receptor Signaling Induces Immunoglobulin κ Locus Accessibility by Functional Redistribution of Enhancer-Mediated Chromatin Interactions.

Published in:

PLoS Biology, 2014, v. 12, n. 2, p. 1, doi. 10.1371/journal.pbio.1001791

By:

Stadhouders, Ralph;
de Bruijn, Marjolein J. W.;
Rother, Magdalena B.;
Yuvaraj, Saravanan;
de Almeida, Claudia Ribeiro;
Kolovos, Petros;
Van Zelm, Menno C.;
van Ijcken, Wilfred;
Grosveld, Frank;
Soler, Eric;
Hendriks, Rudi W.

Publication type:

Article

Conservation and Divergence of Regulatory Strategies at Hox Loci and the Origin of Tetrapod Digits.

Published in:

PLoS Biology, 2014, v. 12, n. 1, p. 1, doi. 10.1371/journal.pbio.1001773

By:

Woltering, Joost M.;
Noordermeer, Daan;
Leleu, Marion;
Duboule, Denis

Publication type:

Article

The Epigenome of Evolving Drosophila Neo-Sex Chromosomes: Dosage Compensation and Heterochromatin Formation.

Published in:

PLoS Biology, 2013, v. 11, n. 11, p. 1, doi. 10.1371/journal.pbio.1001711

By:

Zhou, Qi;
Ellison, Christopher E.;
Kaiser, Vera B.;
Alekseyenko, Artyom A.;
Gorchakov, Andrey A.;
Bachtrog, Doris

Publication type:

Article

Deacetylation Ensures Timely Regulation of Flowering.

Published in:

PLoS Biology, 2013, v. 11, n. 9, p. 1, doi. 10.1371/journal.pbio.1001646

By:

Coombs, Amy

Publication type:

Article

Bursting with Randomness: A Simple Model for Stochastic Control of Gene Expression.

Published in:

PLoS Biology, 2013, v. 11, n. 8, p. 1, doi. 10.1371/journal.pbio.1001622

By:

Robinson, Richard

Publication type:

Article

Fbw7 Repression by Hes5 Creates a Feedback Loop That Modulates Notch-Mediated Intestinal and Neural Stem Cell Fate Decisions.

Published in:

PLoS Biology, 2013, v. 11, n. 6, p. 1, doi. 10.1371/journal.pbio.1001586

By:

Sancho, Rocio;
Blake, Sophia M.;
Tendeng, Christian;
Clurman, Bruce E.;
Lewis, Julian;
Behrens, Axel

Publication type:

Article

Transgenerational Propagation and Quantitative Maintenance of Paternal Centromeres Depends on Cid/Cenp-A Presence in Drosophila Sperm

Published in:

PLoS Biology, 2012, v. 10, n. 12, p. 1, doi. 10.1371/journal.pbio.1001434

By:

Raychaudhuri, Nitika;
Dubruille, Raphaelle;
Orsi, Guillermo A.;
Bagheri, Homayoun C.;
Loppin, Benjamin;
Lehner, Christian F.

Publication type:

Article

Genome-Wide RNA Polymerase II Profiles and RNA Accumulation Reveal Kinetics of Transcription and Associated Epigenetic Changes During Diurnal Cycles

Published in:

PLoS Biology, 2012, v. 10, n. 11, p. 1, doi. 10.1371/journal.pbio.1001442

By:

Le Martelot, Gwendal;
Canella, Donatella;
Symul, Laura;
Migliavacca, Eugenia;
Gilardi, Federica;
Liechti, Robin;
Martin, Olivier;
Harshman, Keith;
Delorenzi, Mauro;
Desvergne, Béatrice;
Herr, Winship;
Deplancke, Bart;
Schibler, Ueli;
Rougemont, Jacques;
Guex, Nicolas;
Hernandez, Nouria;
Naef, Felix

Publication type:

Article

Human-Specific Histone Methylation Signatures at Transcription Start Sites in Prefrontal Neurons

Published in:

PLoS Biology, 2012, v. 10, n. 11, p. 1, doi. 10.1371/journal.pbio.1001427

By:

Shulha, Hennady P.;
Crisci, Jessica L.;
Reshetov, Denis;
Tushir, Jogender S.;
Cheung, Iris;
Bharadwaj, Rahul;
Chou, Hsin-Jung;
Houston, Isaac B.;
Peter, Cyril J.;
Mitchell, Amanda C.;
Yao, Wei-Dong;
Myers, Richard H.;
Chen, Jiang-fan;
Preuss, Todd M.;
Rogaev, Evgeny I.;
Jensen, Jeffrey D.;
Weng, Zhiping;
Akbarian, Schahram

Publication type:

Article

Natural Selection Molds Genomic Insulator Elements

Published in:

PLoS Biology, 2012, v. 10, n. 11, p. 1, doi. 10.1371/journal.pbio.1001421

By:

Robinson, Richard

Publication type:

Article

Adaptive Evolution and the Birth of CTCF Binding Sites in the Drosophila Genome

Published in:

PLoS Biology, 2012, v. 10, n. 11, p. 1, doi. 10.1371/journal.pbio.1001420

By:

Ni, Xiaochun;
Zhang, Yong E.;
Nègre, Nicolas;
Chen, Sidi;
Long, Manyuan;
White, Kevin P.

Publication type:

Article

Systematic Dissection of Roles for Chromatin Regulators in a Yeast Stress Response.

Published in:

PLoS Biology, 2012, v. 10, n. 7, p. 1, doi. 10.1371/journal.pbio.1001369

By:

Weiner, Assaf;
Chen, Hsiuyi V.;
Chih Long Liu;
Rahat, Ayelet;
Klien, Avital;
Soares, Luis;
Gudipati, Mohanram;
Pfeffner, Jenna;
Regev, Aviv;
Buratowski, Stephen;
Pleiss, Jeffrey A.;
Friedman, Nir;
Rando, Oliver J.

Publication type:

Article

Hyphal Development in Candida albicans Requires Two Temporally Linked Changes in Promoter Chromatin for Initiation and Maintenance.

Published in:

PLoS Biology, 2011, v. 9, n. 7, p. 1, doi. 10.1371/journal.pbio.1001105

By:

Yang Lu;
Chang Su;
Allen Wang;
Haoping Liu

Publication type:

Article

Premitotic Assembly of Human CENPs -T and -W Switches Centromeric Chromatin to a Mitotic State.

Published in:

PLoS Biology, 2011, v. 9, n. 6, p. 1, doi. 10.1371/journal.pbio.1001082

By:

Prendergast, Lisa;
van Vuuren, Chelly;
Kaczmarczyk, Agnieszka;
Doering, Volker;
Hellwig, Daniela;
Quinn, Nadine;
Hoischen, Christian;
Diekmann, Stephan;
Sullivan, Kevin F.

Publication type:

Article

Evidence of Activity-Specific, Radial Organization of Mitotic Chromosomes in Drosophila.

Published in:

PLoS Biology, 2011, v. 9, n. 1, p. 1, doi. 10.1371/journal.pbio.1000574

By:

Strukov, Yuri G.;
Sural, Tûba H.;
Kuroda, Mitzi I.;
Sedat, John W.

Publication type:

Article

Co-Evolution of Transcriptional Silencing Proteins and the DNA Elements Specifying Their Assembly.

Published in:

PLoS Biology, 2010, v. 8, n. 11, p. 1, doi. 10.1371/journal.pbio.1000550

By:

Zill, Oliver A.;
Scannell, Devin;
Teytelman, Leonid;
Rine, Jasper

Publication type:

Article

The Role of Nucleosome Positioning in the Evolution of Gene Regulation.

Published in:

PLoS Biology, 2010, v. 8, n. 7, p. 1, doi. 10.1371/journal.pbio.1000414

By:

Tsankov, Alexander M.;
Thompson, Dawn Anne;
Socha, Amanda;
Regev, Aviv;
Rando, Oliver J.

Publication type:

Article

Roles for H2A.Z and Its Acetylation in GAL1 Transcription and Gene Induction, but Not GAL1-Transcriptional Memory.

Published in:

PLoS Biology, 2010, v. 8, n. 6, p. 1, doi. 10.1371/journal.pbio.1000401

By:

Halley, Jeffrey E.;
Kaplan, Tommy;
Wang, Alice Y.;
Kobor, Michael S.;
Rine, Jasper

Publication type:

Article

Spatial Epigenetic Control of Mono- and Bistable Gene Expression.

Published in:

PLoS Biology, 2010, v. 8, n. 3, p. 1, doi. 10.1371/journal.pbio.1000332

By:

Kelemen, János Z.;
Ratna, Prasuna;
Scherrer, Simone;
Becskei, Attila

Publication type:

Article

Global Regulator SATB1 Recruits β-Catenin and Regulates TH2 Differentiation in Wnt-Dependent Manner.

Published in:

PLoS Biology, 2010, v. 8, n. 1, p. 1, doi. 10.1371/journal.pbio.1000296

By:

Notani, Dimple;
Gottimukkala, Kamalvishnu P.;
Jayani, Ranveer S.;
Limaye, Amita S.;
Damle, Madhujit V.;
Mehta, Sameet;
Purbey, Prabhat Kumar;
Joseph, Jomon;
Galande, Sanjeev

Publication type:

Article

AGAMOUS Controls GIANT KILLER, a Multifunctional Chromatin Modifier in Reproductive Organ Patterning and Differentiation.

Published in:

PLoS Biology, 2009, v. 7, n. 11, p. 1, doi. 10.1371/journal.pbio.1000251

By:

Kian-Hong Ng;
Hao Yu;
Ito, Toshiro

Publication type:

Article

Misguided Transcriptional Elongation Causes Mixed Lineage Leukemia.

Published in:

PLoS Biology, 2009, v. 7, n. 11, p. 1, doi. 10.1371/journal.pbio.1000249

By:

Mueller, Dorothee;
García-Cuéllar, María-Paz;
Bach, Christian;
Buhl, Sebastian;
Maethner, Emanuel;
Slany, Robert K.

Publication type:

Article

Functional Anatomy of Polycomb and Trithorax Chromatin Landscapes in Drosophila Embryos.

Published in:

PLoS Biology, 2009, v. 7, n. 1, p. e1000013, doi. 10.1371/journal.pbio.1000013

By:

Leblanc, Benjamin;
Portoso, Manuela;
Jaschek, Rami;
Tolhuis, Bas;
Van Lohuizen, Maarten;
Tanay, Amos;
Cavalli, Giacomo

Publication type:

Article

Activator Control of Nucleosome Occupancy in Activation and Repression of Transcription.

Published in:

PLoS Biology, 2008, v. 6, n. 12, p. e317, doi. 10.1371/journal.pbio.0060317

By:

Bryant, Gene O.;
Prabhu, Vidya;
Floer, Monique;
Xin Wang;
Spagna, Dan;
Schreiber, David;
Ptashne, Mark

Publication type:

Article

PcG Proteins, DNA Methylation, and Gene Repression by Chromatin Looping.

Published in:

PLoS Biology, 2008, v. 6, n. 12, p. e306, doi. 10.1371/journal.pbio.0060306

By:

Tiwari, Vijay K.;
McGarvey, Kelly M.;
Licchesi, Julien D. F.;
Ohm, Joyce E.;
Herman, James G.;
Schbeler, Dirk;
Baylin, Stephen B.

Publication type:

Article

BEAF Regulates Cell-Cycle Genes through the Controlled Deposition of H3K9 Methylation Marks into Its Conserved Dual-Core Binding Sites.

Published in:

PLoS Biology, 2008, v. 6, n. 12, p. e327, doi. 10.1371/journal.pbio.0060327

By:

Emberly, Eldon;
Blattes, Roxane;
Schuettengruber, Bernd;
Hennion, Magali;
Nan Jiang;
Hart, Craig M.;
Käs, Emmanuel;
Cuvier, Olivier

Publication type:

Article

Loopy Chromatin Brings Distant DNA to Bear on Silencing Promoter Genes.

Published in:

PLoS Biology, 2008, v. 6, n. 12, p. e313, doi. 10.1371/journal.pbio.0060313

By:

Hoff, Mary

Publication type:

Article

The Nucleosome-Remodeling ATPase ISWI Is Regulated by Poly-ADP-Ribosylation.

Published in:

PLoS Biology, 2008, v. 6, n. 10, p. 2329, doi. 10.1371/journal.pbio.0060252

By:

Sala1, Anna;
La Rocca, Gaspare;
Burgio, Giosalba;
Kotova, Elena;
Di Gesù, Dario;
Collesano, Marianna;
Ingrassia, Antonia M. R.;
Tulin, Alexei V.;
Corona, Davide F. V.

Publication type:

Article

Coordinate Gene Regulation during Hematopoiesis Is Related to Genomic Organization.

Published in:

PLoS Biology, 2007, v. 5, n. 11, p. e309, doi. 10.1371/journal.pbio.0050309

By:

Kosak, Steven T.;
Scalzo, David;
Alworth, Sam V.;
Li, Fusheng;
Palmer, Stephanie;
Enver, Tariq;
Lee, James S. J.;
Groudine, Mark

Publication type:

Article

ISWI Regulates Higher-Order Chromatin Structure and Histone H1 Assembly In Vivo.

Published in:

PLoS Biology, 2007, v. 5, n. 9, p. e232, doi. 10.1371/journal.pbio.0050232

By:

Corona, Davide F. V.;
Siriaco, Giorgia;
Armstrong, Jennifer A.;
Snarskaya, Natalia;
McClymont, Stephanie A.;
Scott, Matthew P.;
Tamkun, John W.

Publication type:

Article

Tetrameric Structure of Centromeric Nucleosomes in Interphase Drosophila Cells.

Published in:

PLoS Biology, 2007, v. 5, n. 8, p. 1798, doi. 10.1371/journal.pbio.0050218

By:

Dalal, Yamini;
Wang, Hongda;
Lindsay, Stuart;
Henikoff, Steven

Publication type:

Article

H2A.Z-Mediated Localization of Genes at the Nuclear Periphery Confers Epigenetic Memory of Previous Transcriptional State.

Published in:

PLoS Biology, 2007, v. 5, n. 4, p. 0704, doi. 10.1371/journal.pbio.0050081

By:

Brickner, Donna Garvey;
Cajigas, Ivelisse;
Fondufe-Mittendorf, Yvonne;
Ahmed, Sara;
Pei-Chih Lee;
Widom, Jonathan;
Brickner, Jason H.

Publication type:

Article

Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles.

Published in:

PLoS Biology, 2007, v. 5, n. 1, p. 54, doi. 10.1371/journal.pbio.0050008

By:

Faith, Jeremiah J.;
Hayete, Boris;
Thaden, Joshua T.;
Mogno, Ilaria;
Wierzbowski, Jamey;
Cottarel, Guillaume;
Kasif, Simon;
Collins, James J.;
Gardner, Timothy S.

Publication type:

Article

Chromosomal Organization: Mingling with the Neighbors.

Published in:

PLoS Biology, 2006, v. 4, n. 5, p. e155, doi. 10.1371/journal.pbio.0040155

By:

Aten, Jacob A.;
Kanaar, Roland

Publication type:

Article

Interphase Chromosomes Mingle with Their Peers.

Published in:

PLoS Biology, 2006, v. 4, n. 5, p. e174, doi. 10.1371/journal.pbio.0040174

By:

Chanut, Françoise

Publication type:

Article