Works matching DE "BOOLEAN networks"

Results: 73

Mapping the attractor landscape of Boolean networks with biobalm Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 5, p. 1, doi. 10.1093/bioinformatics/btaf280

By:

Trinh, Van-Giang;
Park, Kyu Hyong;
Pastva, Samuel;
Rozum, Jordan C

Publication type:

Article

A Learning Probabilistic Boolean Network Model of a Manufacturing Process with Applications in System Asset Maintenance.

Published in:

Entropy, 2025, v. 27, n. 5, p. 463, doi. 10.3390/e27050463

By:

Rivera Torres, Pedro Juan;
Chen, Chen;
Rodríguez González, Sara;
Llanes Santiago, Orestes

Publication type:

Article

Melding Boolean networks and reaction systems under synchronous, asynchronous and most permissive semantics.

Published in:

Natural Computing, 2024, v. 23, n. 2, p. 235, doi. 10.1007/s11047-024-09990-5

By:

Bruni, Roberto;
Gori, Roberta;
Milazzo, Paolo;
Siboulet, Hélène

Publication type:

Article

Preface.

Published in:

Natural Computing, 2024, v. 23, n. 2, p. 157, doi. 10.1007/s11047-024-09991-4

By:

Genova, Daniela;
Petre, Ion

Publication type:

Article

Linear cuts in Boolean networks.

Published in:

Natural Computing, 2023, v. 22, n. 3, p. 431, doi. 10.1007/s11047-023-09945-2

By:

Naldi, Aurélien;
Richard, Adrien;
Tonello, Elisa

Publication type:

Article

Complexity of limit cycles with block-sequential update schedules in conjunctive networks.

Published in:

Natural Computing, 2023, v. 22, n. 3, p. 411, doi. 10.1007/s11047-023-09947-0

By:

Aracena, Julio;
Bridoux, Florian;
Gómez, Luis;
Salinas, Lilian

Publication type:

Article

Preface.

Published in:

Natural Computing, 2023, v. 22, n. 3, p. 409, doi. 10.1007/s11047-023-09952-3

By:

Formenti, Enrico;
Sené, Sylvain;
Theyssier, Guillaume

Publication type:

Article

Evolving Multi-valued Regulatory Networks on Tunable Fitness Landscapes.

Published in:

Complex Systems, 2023, v. 32, n. 3, p. 289, doi. 10.25088/ComplexSystems.32.3.289

By:

Bull, Larry

Publication type:

Article

LBF-MI: Limited Boolean Functions and Mutual Information to Infer a Gene Regulatory Network from Time-Series Gene Expression Data.

Published in:

Genes, 2024, v. 15, n. 12, p. 1530, doi. 10.3390/genes15121530

By:

Barman, Shohag;
Farid, Fahmid Al;
Gope, Hira Lal;
Hafiz, Md. Ferdous Bin;
Khan, Niaz Ashraf;
Ahmad, Sabbir;
Mansor, Sarina

Publication type:

Article

Reducing Boolean networks with backward equivalence.

Published in:

BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05326-9

By:

Argyris, Georgios A.;
Lluch Lafuente, Alberto;
Tribastone, Mirco;
Tschaikowski, Max;
Vandin, Andrea

Publication type:

Article

Output controllability of impulsive Boolean control networks based on hybrid‐index model.

Published in:

IET Control Theory & Applications (Wiley-Blackwell), 2024, v. 18, n. 6, p. 738, doi. 10.1049/cth2.12609

By:

Liang, Qianya;
Zhou, Rongpei;
Chen, Jie;
Ding, Yong

Publication type:

Article

Bisimulations for delayed switched Boolean control networks and its application in controllability.

Published in:

IET Control Theory & Applications (Wiley-Blackwell), 2023, v. 17, n. 11, p. 1552, doi. 10.1049/cth2.12491

By:

Yu, Weiyong;
Deng, Zhenhua;
Guo, Qianjin;
Liu, Qiang

Publication type:

Article

PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks.

Published in:

NPJ Systems Biology & Applications, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41540-023-00314-4

By:

Ponce-de-Leon, Miguel;
Montagud, Arnau;
Noël, Vincent;
Meert, Annika;
Pradas, Gerard;
Barillot, Emmanuel;
Calzone, Laurence;
Valencia, Alfonso

Publication type:

Article

Investigating the Effect of Changes in Model Parameters on Optimal Control Policies, Time to Absorption, and Mixing Times.

Published in:

Letters in Biomathematics, 2023, v. 10, n. 1, p. 193

By:

Johnson, Kathleen;
Plaugher, Daniel;
Murrugarra, David

Publication type:

Article

Vitamin D Decreases Susceptibility of CD4 + T Cells to HIV Infection by Reducing AKT Phosphorylation and Glucose Uptake: A Bioinformatic and In Vitro Approach.

Published in:

Biomolecules (2218-273X), 2025, v. 15, n. 3, p. 432, doi. 10.3390/biom15030432

By:

Loaiza, John D.;
Gómez, Jose Fernando;
Muñoz-Escudero, Daniel;
Gonzalez, Sandra M.;
Eubank, Timothy Kyle;
Rugeles, Maria T.;
Rodríguez-Perea, Ana Lucía;
Aguilar-Jimenez, Wbeimar

Publication type:

Article

The connectivity degree controls the difficulty in reservoir design of random boolean networks.

Published in:

Frontiers in Computational Neuroscience, 2024, p. 1, doi. 10.3389/fncom.2024.1348138

By:

Calvet, Emmanuel;
Reulet, Bertrand;
Rouat, Jean

Publication type:

Article

Synchronization of Boolean networks with chaos‐driving and its application in image cryptosystem.

Published in:

IET Image Processing (Wiley-Blackwell), 2023, v. 17, n. 14, p. 4176, doi. 10.1049/ipr2.12926

By:

Yan, Peng‐Fei;
Zhang, Hao;
Zhang, Chuan;
Chang, Rui‐Yun;
Sun, Yu‐Jie

Publication type:

Article

Optimal Feedback Policy for the Tracking Control of Markovian Jump Boolean Control Networks over a Finite Horizon.

Published in:

Mathematics (2227-7390), 2025, v. 13, n. 8, p. 1332, doi. 10.3390/math13081332

By:

Chen, Bingquan;
Xue, Yuyi;
Shi, Aiju

Publication type:

Article

One-Bit Function Perturbation Impact on Robust Set Stability of Boolean Networks with Disturbances.

Published in:

Mathematics (2227-7390), 2024, v. 12, n. 14, p. 2258, doi. 10.3390/math12142258

By:

Deng, Lei;
Cao, Xiujun;
Zhao, Jianli

Publication type:

Article

Speed, Power and Area Optimized Monotonic Asynchronous Array Multipliers.

Published in:

Journal of Low Power Electronics & Applications, 2024, v. 14, n. 1, p. 1, doi. 10.3390/jlpea14010001

By:

Balasubramanian, Padmanabhan;
Mastorakis, Nikos E.

Publication type:

Article

scBoolSeq: Linking scRNA-seq statistics and Boolean dynamics.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.pcbi.1011620

By:

Magaña-López, Gustavo;
Calzone, Laurence;
Zinovyev, Andrei;
Paulevé, Loïc

Publication type:

Article

Metabolic symbiosis between oxygenated and hypoxic tumour cells: An agent-based modelling study.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 3, p. 1, doi. 10.1371/journal.pcbi.1011944

By:

Jayathilake, Pahala Gedara;
Victori, Pedro;
Pavillet, Clara E.;
Lee, Chang Heon;
Voukantsis, Dimitrios;
Miar, Ana;
Arora, Anjali;
Harris, Adrian L.;
Morten, Karl J.;
Buffa, Francesca M.

Publication type:

Article

Inferring gene regulatory networks using transcriptional profiles as dynamical attractors.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010991

By:

Li, Ruihao;
Rozum, Jordan C.;
Quail, Morgan M.;
Qasim, Mohammad N.;
Sindi, Suzanne S.;
Nobile, Clarissa J.;
Albert, Réka;
Hernday, Aaron D.

Publication type:

Article

Deep exploration of logical models of cell differentiation in human preimplantation embryos.

Published in:

NPJ Systems Biology & Applications, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41540-025-00537-7

By:

Bolteau, Mathieu;
Messaoudi, Célia;
David, Laurent;
Bourdon, Jérémie;
Guziolowski, Carito

Publication type:

Article

Network analyses of brain tumor multiomic data reveal pharmacological opportunities to alter cell state transitions.

Published in:

NPJ Systems Biology & Applications, 2025, v. 11, n. 1, p. 1, doi. 10.1038/s41540-025-00493-2

By:

Bumbaca, Brandon;
Huggins, Jonah R.;
Birtwistle, Marc R.;
Gallo, James M.

Publication type:

Article

Stochastic Boolean model of normal and aberrant cell cycles in budding yeast.

Published in:

NPJ Systems Biology & Applications, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41540-024-00452-3

By:

Taoma, Kittisak;
Tyson, John J.;
Laomettachit, Teeraphan;
Kraikivski, Pavel

Publication type:

Article

Canalization reduces the nonlinearity of regulation in biological networks.

Published in:

NPJ Systems Biology & Applications, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41540-024-00392-y

By:

Kadelka, Claus;
Murrugarra, David

Publication type:

Article

Set Restabilization of Perturbed Boolean Control Networks.

Published in:

Electronics (2079-9292), 2024, v. 13, n. 18, p. 3624, doi. 10.3390/electronics13183624

By:

Hou, Yanfang;
Tian, Hui

Publication type:

Article

Entropy Model of Rosin Autonomous Boolean Network Digital True Random Number Generator.

Published in:

Electronics (2079-9292), 2024, v. 13, n. 6, p. 1140, doi. 10.3390/electronics13061140

By:

Zong, Yi;
Dong, Lihua;
Lu, Xiaoxin

Publication type:

Article

Canalizing kernel for cell fate determination.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 5, p. 1, doi. 10.1093/bib/bbae406

By:

Kim, Namhee;
Lee, Jonghoon;
Kim, Jongwan;
Kim, Yunseong;
Cho, Kwang-Hyun

Publication type:

Article

Reconstruction of gene regulatory networks for Caenorhabditis elegans using tree-shaped gene expression data.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 5, p. 1, doi. 10.1093/bib/bbae396

By:

Wu, Yida;
Zhou, Da;
Hu, Jie

Publication type:

Article

LogicGep: Boolean networks inference using symbolic regression from time-series transcriptomic profiling data.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 4, p. 1, doi. 10.1093/bib/bbae286

By:

Zhang, Dezhen;
Gao, Shuhua;
Liu, Zhi-Ping;
Gao, Rui

Publication type:

Article

Single-cell multi-omics analysis identifies context-specific gene regulatory gates and mechanisms.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae180

By:

Malekpour, Seyed Amir;
Haghverdi, Laleh;
Sadeghi, Mehdi

Publication type:

Article

Biologically meaningful regulatory logic enhances the convergence rate in Boolean networks and bushiness of their state transition graph.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae150

By:

Sil, Priyotosh;
Subbaroyan, Ajay;
Kulkarni, Saumitra;
Martin, Olivier C;
Samal, Areejit

Publication type:

Article

Boolean Modeling of Biological Network Applied to Protein–Protein Interaction Network of Autism Patients.

Published in:

Biology (2079-7737), 2024, v. 13, n. 8, p. 606, doi. 10.3390/biology13080606

By:

Nezamuldeen, Leena;
Jafri, Mohsin Saleet

Publication type:

Article

Mathematical modeling in autoimmune diseases: from theory to clinical application.

Published in:

2025

By:

Ugolkov, Yaroslav;
Nikitich, Antonina;
Leon, Cristina;
Helmlinger, Gabriel;
Peskov, Kirill;
Sokolov, Victor;
Volkova, Alina

Publication type:

Literature Review

Design of all feasible output feedback controllers for robust output tracking of Boolean control networks.

Published in:

Transactions of the Institute of Measurement & Control, 2024, v. 46, n. 12, p. 2406, doi. 10.1177/01423312241231487

By:

Deng, Lei;
Fu, Shihua;
Cao, Xiujun;
Zhang, Fengxia

Publication type:

Article

Study of Boolean networks via matrices of support.

Published in:

Discrete Mathematics, Algorithms & Applications, 2024, v. 16, n. 6, p. 1, doi. 10.1142/S1793830923500714

By:

Wei, Yangjiang;
Zou, Yi Ming

Publication type:

Article

Technology of logical synthesis of periodic trajectory in a controlled Boolean network.

Published in:

Mathematics in Engineering, Science & Aerospace (MESA), 2024, v. 15, n. 1, p. 57

By:

Oparin, Gennady;
Bogdanova, Vera;
Pashinin, Anton

Publication type:

Article

Dynamics of controlled asynchronous Boolean networks.

Published in:

Mathematics in Engineering, Science & Aerospace (MESA), 2024, v. 15, n. 1, p. 43

By:

Oparin, Gennady;
Bogdanova, Vera;
Pashinin, Anton

Publication type:

Article

Qualitative analysis of the dynamics of controlled singular logic networks.

Published in:

Mathematics in Engineering, Science & Aerospace (MESA), 2024, v. 15, n. 1, p. 31

By:

Oparin, Gennady;
Bogdanova, Vera;
Pashinin, Anton

Publication type:

Article

Set stability and synchronization of generalized asynchronous probabilistic Boolean networks with impulsive effects.

Published in:

PLoS ONE, 2025, v. 20, n. 2, p. 1, doi. 10.1371/journal.pone.0318038

By:

Liu, Fukun;
Sun, Yujie;
Zhang, Chuan;
Xu, Lunshi;
Zhang, Hao

Publication type:

Article

In-silico tool based on Boolean networks and meshless simulations for prediction of reaction and transport mechanisms in the systemic administration of chemotherapeutic drugs.

Published in:

PLoS ONE, 2025, v. 20, n. 2, p. 1, doi. 10.1371/journal.pone.0315194

By:

Vélez Salazar, Fabián Mauricio;
Patiño, Iván David

Publication type:

Article

SAILoR: Structure-Aware Inference of Logic Rules.

Published in:

PLoS ONE, 2024, v. 19, n. 6, p. 1, doi. 10.1371/journal.pone.0304102

By:

Pušnik, Žiga;
Mraz, Miha;
Zimic, Nikolaj;
Moškon, Miha

Publication type:

Article

Measuring cancer driving force of chromosomal aberrations through multi-layer Boolean implication networks.

Published in:

PLoS ONE, 2024, v. 19, n. 4, p. 1, doi. 10.1371/journal.pone.0301591

By:

Cosentini, Ilaria;
Condorelli, Daniele Filippo;
Locicero, Giorgio;
Ferro, Alfredo;
Pulvirenti, Alfredo;
Barresi, Vincenza;
Alaimo, Salvatore

Publication type:

Article

Sensory–Motor Loop Adaptation in Boolean Network Robots.

Published in:

Sensors (14248220), 2024, v. 24, n. 11, p. 3393, doi. 10.3390/s24113393

By:

Braccini, Michele;
Gardinazzi, Yuri;
Roli, Andrea;
Villani, Marco

Publication type:

Article

Fault Detection and Isolation in Smart-Grid Networks of Intelligent Power Routers Modeled as Probabilistic Boolean Networks.

Published in:

Complexity, 2023, p. 1, doi. 10.1155/2023/6690805

By:

Rivera Torres, Pedro J.;
Gershenson García, Carlos;
Kanaan Izquierdo, Samir

Publication type:

Article

状态触发随机脉冲布尔控制网络的能控性.

Published in:

Control Theory & Applications / Kongzhi Lilun Yu Yinyong, 2025, v. 42, n. 4, p. 787, doi. 10.7641/CTA.2023.30171

By:

周俊岚;
周荣佩

Publication type:

Article

From Boolean networks to linear dynamical systems: a simplified route.

Published in:

Journal of Difference Equations & Applications, 2023, v. 29, n. 5, p. 542, doi. 10.1080/10236198.2023.2220811

By:

Wang, Yunjiao;
Leite, Maria C. A.;
Ben-Tal, Alona

Publication type:

Article

Temporal, Structural, and Functional Heterogeneities Extend Criticality and Antifragility in Random Boolean Networks.

Published in:

Entropy, 2023, v. 25, n. 2, p. 254, doi. 10.3390/e25020254

By:

López-Díaz, Amahury Jafet;
Sánchez-Puig, Fernanda;
Gershenson, Carlos

Publication type:

Article