Works about BIOLOGICAL networks

Results: 2121

Associative conditioning in gene regulatory network models increases integrative causal emergence.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08411-2

By:

Pigozzi, Federico;
Goldstein, Adam;
Levin, Michael

Publication type:

Article

Division of the large and multifunctional glycoside hydrolase family 2: high functional specificity and biochemical assays in the uncharacterized subfamilies.

Published in:

Biotechnology for Biofuels & Bioproducts, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13068-025-02669-8

By:

Lebreton, Annie;
Garron, Marie-Line;
Vuillemin, Marlene;
Pilgaard, Bo;
Hornung, Bastian V. H.;
Drula, Elodie;
Lombard, Vincent;
Helbert, William;
Henrissat, Bernard;
Terrapon, Nicolas

Publication type:

Article

A species-level multi-trophic metaweb for Switzerland.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05487-7

By:

Reji Chacko, Merin;
Albouy, Camille;
Altermatt, Florian;
Casanelles-Abella, Joan;
Brändle, Martin;
Boussange, Victor;
Campell, Fadri;
Ellis, Willem N.;
Fopp, Fabian;
Gossner, Martin M.;
Ho, Hsi-Cheng;
Joss, Alain;
Kipf, Pascal;
Neff, Felix;
Petrović, Andjeljko;
Prié, Vincent;
Tomanović, Željko;
Zimmerli, Nik;
Pellissier, Loïc

Publication type:

Article

Büyük ölçekli ağlar için polinom zamanlı kritik düğüm tespiti algoritması.

Published in:

Gümüshane Üniversitesi Fen Bilimleri Enstitüsü Dergisi, 2025, v. 15, n. 2, p. 516, doi. 10.17714/gumusfenbil.1569247

By:

UĞURLU, Onur;
AYGÜL, Yeşim

Publication type:

Article

Stable recurrent dynamics in heterogeneous neuromorphic computing systems using excitatory and inhibitory plasticity.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60697-2

By:

Maryada;
Soldado-Magraner, Saray;
Sorbaro, Martino;
Laje, Rodrigo;
Buonomano, Dean V.;
Indiveri, Giacomo

Publication type:

Article

Unravelling the human taste receptor interactome: machine learning and molecular modelling insights into protein-protein interactions.

Published in:

NPJ Science of Food, 2025, v. 9, n. 1, p. 1, doi. 10.1038/s41538-025-00478-9

By:

Zaverdas, Harry;
Stojceski, Filip;
Romero-Zaliz, Rocío;
Androutsos, Lampros;
Makrygiannis, Pantelis;
Pallante, Lorenzo;
Martos, Vanessa;
Grasso, Gianvito;
Deriu, Marco A.;
Theofilatos, Konstantinos;
Mavroudi, Seferina

Publication type:

Article

A comparative approach to quantify the heterarchical structures of complex systems.

Published in:

Ecology & Society, 2022, v. 27, n. 3, p. 1, doi. 10.5751/ES-13551-270338

By:

Shurety, Amy L.;
Bodin, Örjan;
Cumming, Graeme S.

Publication type:

Article

Dynamic Properties of Network Motifs Contribute to Biological Network Organization.

Published in:

PLoS Biology, 2005, v. 3, n. 10, p. 1, doi. 10.1371/journal.pbio.0030343

By:

Prill, Robert J;
Iglesias, Pablo A;
Levchenko, Andre

Publication type:

Article

The Evolution of Connectivity in Metabolic Networks.

Published in:

PLoS Biology, 2005, v. 3, n. 6, p. 1, doi. 10.1371/journal.pbio.0030228

By:

Pfeiffer, Thomas;
Soyer, Orkun S;
Bonhoeffer, Sebastian

Publication type:

Article

Engineering Gene Networks to Emulate Drosophila Embryonic Pattern Formation.

Published in:

PLoS Biology, 2005, v. 3, n. 2, p. 1, doi. 10.1371/journal.pbio.0030064

By:

Isalan, Mark;
Lemerle, Caroline;
Serrano, Luis

Publication type:

Article

Topology and Robustness in the Drosophila Segment Polarity Network.

Published in:

PLoS Biology, 2004, v. 2, n. 6, p. 1, doi. 10.1371/journal.pbio.0020123

By:

Ingolia, Nicholas T

Publication type:

Article

Mean Field Theory of Self‐Organizing Memristive Connectomes.

Published in:

Annalen der Physik, 2023, v. 535, n. 8, p. 1, doi. 10.1002/andp.202300090

By:

Caravelli, Francesco;
Milano, Gianluca;
Ricciardi, Carlo;
Kuncic, Zdenka

Publication type:

Article

Preface.

Published in:

2020

By:

Formenti, Enrico;
Sené, Sylvain

Publication type:

Editorial

About block-parallel Boolean networks: a position paper.

Published in:

Natural Computing, 2020, v. 19, n. 1, p. 5, doi. 10.1007/s11047-019-09779-x

By:

Demongeot, Jacques;
Sené, Sylvain

Publication type:

Article

Foreword: asynchronous behavior of cellular automata and discrete models.

Published in:

Natural Computing, 2015, v. 14, n. 4, p. 505, doi. 10.1007/s11047-015-9524-3

By:

Dennunzio, Alberto;
Formenti, Enrico;
Mauri, Giancarlo;
Worsch, Thomas

Publication type:

Article

Minimization and equivalence in multi-valued logical models of regulatory networks.

Published in:

Natural Computing, 2015, v. 14, n. 4, p. 555, doi. 10.1007/s11047-015-9525-2

By:

Streck, Adam;
Lorenz, Therese;
Siebert, Heike

Publication type:

Article

An evolutionary procedure for inferring MP systems regulation functions of biological networks.

Published in:

Natural Computing, 2015, v. 14, n. 3, p. 375, doi. 10.1007/s11047-014-9421-1

By:

Castellini, Alberto;
Manca, Vincenzo;
Zucchelli, Mauro

Publication type:

Article

Algorithms and models for complex natural systems.

Published in:

2015

By:

Coello, Carlos;
Franco, Giuditta;
Krasnogor, Natalio;
Pavone, Mario

Publication type:

Editorial

Ergothioneine attenuates varicocele‐induced testicular damage by upregulating HSP90AA1 in rats.

Published in:

Journal of Biochemical & Molecular Toxicology, 2023, v. 37, n. 4, p. 1, doi. 10.1002/jbt.23301

By:

Chen, Qi;
Zhou, Ranran;
Yang, Cheng;
Jiang, Qijun;
Yuan, Haoyu;
Qiu, Xin;
Tian, Hu;
Zhou, Junhao;
Liu, Cundong

Publication type:

Article

m-PageRank: A NOVEL CENTRALITY MEASURE FOR MULTILAYER NETWORKS.

Published in:

Advances in Complex Systems, 2020, v. 23, n. 5, p. N.PAG, doi. 10.1142/S0219525920500125

By:

CHERIYAN, JO;
SAJEEV, G. P.

Publication type:

Article

Using biological networks to integrate, visualize and analyze genomics data.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0205-1

By:

Charitou, Theodosia;
Bryan, Kenneth;
Lynn, David J.

Publication type:

Article

On the Dynamics of Matrix Models for Immune Clonal Networks.

Published in:

Journal of Mathematical Sciences, 2022, v. 263, n. 2, p. 198, doi. 10.1007/s10958-022-05920-x

By:

Balinsky, A. A.;
Gafiychuk, V. V.;
Kyshakevych, B. Yu.;
Prykarpatsky, A. K.

Publication type:

Article

Exploring the Genetic and Molecular Connection between Autism and Huntington's Disease via Transcriptomics and Biological Interaction Networks Analysis.

Published in:

Journal of Computational Biophysics & Chemistry, 2025, v. 24, n. 2, p. 215, doi. 10.1142/S2737416524500583

By:

Naveed, Muhammad;
Cheema, Sana Rehman;
Aziz, Tariq;
Makhdoom, Syeda Izma;
Saleem, Urooj;
Jamil, Hamza;
Alhomrani, Majid;
Alsanie, Walaa F.;
Alamri, Abdulhakeem S.

Publication type:

Article

The Impact of Centrality Measures in Protein–Protein Interaction Networks: Tools, Databases, Challenges and Future Directions.

Published in:

Journal of Computational Biophysics & Chemistry, 2024, v. 23, n. 6, p. 815, doi. 10.1142/S2737416524400076

By:

Parisutham, Nirmala

Publication type:

Article

A new era of synthetic biology—microbial community design.

Published in:

Synthetic Biology (23977000), 2024, v. 9, n. 1, p. 1, doi. 10.1093/synbio/ysae011

By:

Matuszyńska, Anna;
Ebenhöh, Oliver;
Zurbriggen, Matias D;
Ducat, Daniel C;
Axmann, Ilka M

Publication type:

Article

长链非编码 RNA 分子作用机制研究进展 .

Published in:

Journal of Henan Agricultural Sciences, 2021, v. 50, n. 4, p. 1, doi. 10.15933/j.cnki.1004-3268.2021.04.001

By:

郭东光;
陈明艳;
李文明;
王丰;
郭赞莹;
孙国鹏;
李鹏;
岳锋;
朱艳平;
王选年

Publication type:

Article

Intracellular Molecular Pathways and the Biosystems that Arise from Them: An Ontological Investigation.

Published in:

Philosophy, Theory, & Practice in Biology, 2024, v. 16, n. 3, p. 1, doi. 10.3998/ptpbio.5263

By:

Stein, Ross L.

Publication type:

Article

KOLEKTOR HLÁVKŮV MOST - NOVÁ ŘEŠENÍ PŘI PROJEKTOVÁNÍ A VÝSTAVBĚ.

Published in:

Tunel, 2018, v. 27, n. 3, p. 4

By:

KOZUBÍK, RADEK;
DOHNÁLEK, VÁCLAV;
RÁČEK, VÁCLAV;
ZLÁMAL, JAROMÍR

Publication type:

Article

Social transmission in networks: global efficiency peaks with intermediate levels of modularity.

Published in:

Behavioral Ecology & Sociobiology, 2018, v. 72, n. 9, p. 1, doi. 10.1007/s00265-018-2564-9

By:

Romano, Valéria;
Shen, Mengyu;
Pansanel, Jérôme;
MacIntosh, Andrew J. J.;
Sueur, Cédric

Publication type:

Article

Clinical Stratification of High-Grade Ovarian Serous Carcinoma Using a Panel of Six Biomarkers.

Published in:

Journal of Clinical Medicine, 2019, p. 330, doi. 10.3390/jcm8030330

By:

Kamble, Swapnil C.;
Sen, Arijit;
Dhake, Rahul D.;
Joshi, Aparna N.;
Midha, Divya;
Bapat, Sharmila A.

Publication type:

Article

Co-evolution of Project Stakeholder Networks.

Published in:

Journal of Modern Project Management, 2020, v. 8, n. 1, p. 96, doi. 10.19255/JMPM02306

By:

Ong, Stephen;
Udd, Shahadat

Publication type:

Article

Multi-omics Approaches to Improve Animal Production.

Published in:

Journal of Animal Science, 2021, v. 99, p. 20, doi. 10.1093/jas/skab054.036

By:

Da Silva Diniz, Wellison Jarles;
Ward, Alison K.

Publication type:

Article

Association analysis of loci implied in "buffering" epistasis.

Published in:

Journal of Animal Science, 2020, v. 98, n. 3, p. N.PAG, doi. 10.1093/jas/skaa045

By:

Reverter, Antonio;
Vitezica, Zulma G;
Naval-Sánchez, Marina;
Henshall, John;
Raidan, Fernanda S S;
Li, Yutao;
Meyer, Karin;
Hudson, Nicholas J;
Porto-Neto, Laercio R;
Legarra, Andrés

Publication type:

Article

Rejoinder to the discussion of "Bayesian graphical models for modern biological applications".

Published in:

Statistical Methods & Applications, 2022, v. 31, n. 2, p. 287, doi. 10.1007/s10260-022-00634-5

By:

Ni, Yang;
Baladandayuthapani, Veerabhadran;
Vannucci, Marina;
Stingo, Francesco C.

Publication type:

Article

Discussion to: Bayesian graphical models for modern biological applications by Y. Ni, V. Baladandayuthapani, M. Vannucci and F.C. Stingo.

Published in:

Statistical Methods & Applications, 2022, v. 31, n. 2, p. 253, doi. 10.1007/s10260-021-00600-7

By:

Schweinberger, Michael

Publication type:

Article

Degree-Based Entropy of Some Classes of Networks.

Published in:

Mathematics (2227-7390), 2023, v. 11, n. 4, p. 960, doi. 10.3390/math11040960

By:

Nagarajan, S.;
Imran, Muhammad;
Kumar, P. Mahesh;
Pattabiraman, K.;
Ghani, Muhammad Usman

Publication type:

Article

Explainable Machine Learning for Longitudinal Multi-Omic Microbiome.

Published in:

Mathematics (2227-7390), 2022, v. 10, n. 12, p. 1994, doi. 10.3390/math10121994

By:

Laccourreye, Paula;
Bielza, Concha;
Larrañaga, Pedro

Publication type:

Article

Graph, Spectra, Control and Epidemics: An Example with a SEIR Model.

Published in:

Mathematics (2227-7390), 2021, v. 9, n. 22, p. 2987, doi. 10.3390/math9222987

By:

Aletti, Giacomo;
Benfenati, Alessandro;
Naldi, Giovanni

Publication type:

Article

Graph Convolutional Network for Drug Response Prediction Using Gene Expression Data.

Published in:

Mathematics (2227-7390), 2021, v. 9, n. 7, p. 772, doi. 10.3390/math9070772

By:

Kim, Seonghun;
Bae, Seockhun;
Piao, Yinhua;
Jo, Kyuri;
Papadopoulos, Basil;
Santos-García, Gustavo;
Chung, Moo

Publication type:

Article

Modelling Biological Systems: A New Algorithm for the Inference of Boolean Networks.

Published in:

Mathematics (2227-7390), 2021, v. 9, n. 4, p. 373, doi. 10.3390/math9040373

By:

Rubio-Chavarría, Mario;
Santamaría, Cristina;
García-Mora, Belén;
Rubio, Gregorio;
Selva, Josue Antonio Nescolarde

Publication type:

Article

Mobility Management Based on Beam-Level Measurement Report in 5G Massive MIMO Cellular Networks.

Published in:

Electronics (2079-9292), 2020, v. 9, n. 5, p. 865, doi. 10.3390/electronics9050865

By:

Jo, Younghoon;
Lim, Jaechan;
Hong, Daehyoung

Publication type:

Article

Sliceable BVT Evolution Towards Programmable Multi-Tb/s Networking.

Published in:

Electronics (2079-9292), 2019, v. 8, n. 12, p. 1476, doi. 10.3390/electronics8121476

By:

Svaluto Moreolo, Michela;
Fàbrega, Josep M.;
Nadal, Laia

Publication type:

Article

Graph-Theoretical Analysis of Biological Networks: A Survey.

Published in:

Computation, 2023, v. 11, n. 10, p. 188, doi. 10.3390/computation11100188

By:

Erciyes, Kayhan

Publication type:

Article

Application of Graph Theory and Automata Modeling for the Study of the Evolution of Metabolic Pathways with Glycolysis and Krebs Cycle as Case Studies.

Published in:

Computation, 2023, v. 11, n. 6, p. 107, doi. 10.3390/computation11060107

By:

De Las Morenas Mateos, Carlos;
Lahoz-Beltra, Rafael

Publication type:

Article

The Reasonable Effectiveness of Randomness in Scalable and Integrative Gene Regulatory Network Inference and Beyond.

Published in:

Computation, 2021, v. 9, n. 12, p. 146, doi. 10.3390/computation9120146

By:

Banf, Michael;
Hartwig, Thomas

Publication type:

Article

XGRN: Reconstruction of Biological Networks Based on Boosted Trees Regression.

Published in:

Computation, 2021, v. 9, n. 4, p. 48, doi. 10.3390/computation9040048

By:

Dimitrakopoulos, Georgios N.

Publication type:

Article

Bioinformatics-Based Identification of CircRNA-MicroRNA-mRNA Network for Calcific Aortic Valve Disease.

Published in:

Genetics Research, 2023, v. 2023, p. 1, doi. 10.1155/2023/8194338

By:

Song, Linghong;
Wang, Yubing;
Feng, Yufei;
Peng, Hao;
Wang, Chengyan;
Duan, Juncang;
Liu, Kejian;
Shen, Xihua;
Gu, Wenyi;
Qi, Yan;
Jin, Shan;
Pang, Lijuan

Publication type:

Article

Structural constraints on the emergence of oscillations in multi-population neural networks.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.88777

By:

Jie Zang;
Shenquan Liu;
Helson, Pascal;
Kumar, Arvind

Publication type:

Article

Symmetry and range limits in importance indices.

Published in:

Ecology & Evolution (20457758), 2015, v. 5, n. 20, p. 4517, doi. 10.1002/ece3.1649

By:

Seifan, Tal;
Seifan, Merav

Publication type:

Article

EndNote: Feature-based classification of networks.

Published in:

Network Science, 2019, v. 7, n. 3, p. 438, doi. 10.1017/nws.2019.21

By:

Barnett, Ian;
Malik, Nishant;
Kuijjer, Marieke L.;
Mucha, Peter J.;
Onnela, Jukka-Pekka

Publication type:

Article