Works matching DE "BIOLOGICAL networks"
Results: 2047
AMEND 2.0: module identification and multi-omic data integration with multiplex-heterogeneous graphs.
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- BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06063-x
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- Publication type:
- Article
Exploring the Genetic and Molecular Connection between Autism and Huntington's Disease via Transcriptomics and Biological Interaction Networks Analysis.
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- Journal of Computational Biophysics & Chemistry, 2025, v. 24, n. 2, p. 215, doi. 10.1142/S2737416524500583
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- Publication type:
- Article
A comparative approach to quantify the heterarchical structures of complex systems.
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- Ecology & Society, 2022, v. 27, n. 3, p. 1, doi. 10.5751/ES-13551-270338
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- Publication type:
- Article
The Functional Analysis of Selenium-Related Genes and Magnesium-Related Genes in the Gene Expression Profile Microarray in the Peripheral Blood Mononuclear Cells of Keshan Disease.
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- Biological Trace Element Research, 2019, v. 192, n. 1, p. 3, doi. 10.1007/s12011-019-01750-2
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- Article
Molecular Networks Involved in the Immune Control of BK Polyomavirus.
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- Clinical & Developmental Immunology, 2012, p. 1, doi. 10.1155/2012/972102
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- Publication type:
- Article
Biological transportation networks: Modeling and simulation.
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- Analysis & Applications, 2016, v. 14, n. 1, p. 185, doi. 10.1142/S0219530515400059
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- Article
A Structural Approach to Disentangle the Visualization of Bipartite Biological Networks.
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- Complexity, 2018, p. 1, doi. 10.1155/2018/6204947
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- Article
Preface.
- Published in:
- 2020
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- Publication type:
- Editorial
About block-parallel Boolean networks: a position paper.
- Published in:
- Natural Computing, 2020, v. 19, n. 1, p. 5, doi. 10.1007/s11047-019-09779-x
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- Publication type:
- Article
Foreword: asynchronous behavior of cellular automata and discrete models.
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- Natural Computing, 2015, v. 14, n. 4, p. 505, doi. 10.1007/s11047-015-9524-3
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- Publication type:
- Article
Minimization and equivalence in multi-valued logical models of regulatory networks.
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- Natural Computing, 2015, v. 14, n. 4, p. 555, doi. 10.1007/s11047-015-9525-2
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- Publication type:
- Article
An evolutionary procedure for inferring MP systems regulation functions of biological networks.
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- Natural Computing, 2015, v. 14, n. 3, p. 375, doi. 10.1007/s11047-014-9421-1
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- Publication type:
- Article
Algorithms and models for complex natural systems.
- Published in:
- 2015
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- Publication type:
- Editorial
A heterogeneous parallel implementation of the Markov clustering algorithm for large-scale biological networks on distributed CPU–GPU clusters.
- Published in:
- Journal of Supercomputing, 2022, v. 78, n. 7, p. 9017, doi. 10.1007/s11227-021-04204-6
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- Publication type:
- Article
Graphlet-based hyperbolic embeddings capture evolutionary dynamics in genetic networks.
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- Bioinformatics, 2024, v. 40, n. 11, p. 1, doi. 10.1093/bioinformatics/btae650
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- Publication type:
- Article
GNN4DM: a graph neural network-based method to identify overlapping functional disease modules.
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- Bioinformatics, 2024, v. 40, n. 10, p. 1, doi. 10.1093/bioinformatics/btae573
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- Publication type:
- Article
Transfer learning of condition-specific perturbation in gene interactions improves drug response prediction.
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- Bioinformatics, 2024, v. 40, p. i130, doi. 10.1093/bioinformatics/btae249
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- Publication type:
- Article
DDN3.0: determining significant rewiring of biological network structure with differential dependency networks.
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- 2024
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- Publication type:
- Case Study
NetMe 2.0: a web-based platform for extracting and modeling knowledge from biomedical literature as a labeled graph.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae194
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- Publication type:
- Article
Explainable Multilayer Graph Neural Network for cancer gene prediction.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad643
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- Publication type:
- Article
ggkegg: analysis and visualization of KEGG data utilizing the grammar of graphics.
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- Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad622
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- Publication type:
- Article
Scalable inference of cell differentiation networks in gene therapy clonal tracking studies of haematopoiesis.
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- Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad605
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- Publication type:
- Article
Extending protein interaction networks using proteoforms and small molecules.
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- Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad598
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- Publication type:
- Article
Joint embedding of biological networks for cross-species functional alignment.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad529
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- Publication type:
- Article
iGRLDTI: an improved graph representation learning method for predicting drug–target interactions over heterogeneous biological information network.
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- Bioinformatics, 2023, v. 39, n. 8, p. 1, doi. 10.1093/bioinformatics/btad451
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- Publication type:
- Article
CLARIFY: cell–cell interaction and gene regulatory network refinement from spatially resolved transcriptomics.
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- Bioinformatics, 2023, v. 39, p. i484, doi. 10.1093/bioinformatics/btad269
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- Publication type:
- Article
Trap spaces of multi-valued networks: definition, computation, and applications.
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- Bioinformatics, 2023, v. 39, p. i513, doi. 10.1093/bioinformatics/btad262
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- Publication type:
- Article
Supervised biological network alignment with graph neural networks.
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- Bioinformatics, 2023, v. 39, p. i465, doi. 10.1093/bioinformatics/btad241
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- Publication type:
- Article
networkGWAS: a network-based approach to discover genetic associations.
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- Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad370
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- Publication type:
- Article
EBD: an eye biomarker database.
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- Bioinformatics, 2023, v. 39, n. 5, p. 1, doi. 10.1093/bioinformatics/btad194
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- Publication type:
- Article
Modular response analysis reformulated as a multilinear regression problem.
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- Bioinformatics, 2023, v. 39, n. 4, p. 1, doi. 10.1093/bioinformatics/btad166
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- Publication type:
- Article
Boolean network sketches: a unifying framework for logical model inference.
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- Bioinformatics, 2023, v. 39, n. 4, p. 1, doi. 10.1093/bioinformatics/btad158
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- Publication type:
- Article
CFAGO: cross-fusion of network and attributes based on attention mechanism for protein function prediction.
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- Bioinformatics, 2023, v. 39, n. 3, p. 1, doi. 10.1093/bioinformatics/btad123
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- Publication type:
- Article
BraneMF: integration of biological networks for functional analysis of proteins.
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- Bioinformatics, 2022, v. 38, n. 24, p. 5383, doi. 10.1093/bioinformatics/btac691
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- Publication type:
- Article
Linking cells across single-cell modalities by synergistic matching of neighborhood structure.
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- Bioinformatics, 2022, v. 38, p. ii148, doi. 10.1093/bioinformatics/btac481
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- Publication type:
- Article
GLIDER: function prediction from GLIDE-based neighborhoods.
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- Bioinformatics, 2022, v. 38, n. 13, p. 3395, doi. 10.1093/bioinformatics/btac322
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- Publication type:
- Article
Nezzle: an interactive and programmable visualization of biological networks in Python.
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- Bioinformatics, 2022, v. 38, n. 12, p. 3310, doi. 10.1093/bioinformatics/btac324
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- Publication type:
- Article
statistical framework for recovering pseudo-dynamic networks from static data.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2481, doi. 10.1093/bioinformatics/btac038
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- Publication type:
- Article
High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2519, doi. 10.1093/bioinformatics/btac117
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- Publication type:
- Article
SteadyCellPhenotype: a web-based tool for the modeling of biological networks with ternary logic.
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- Bioinformatics, 2022, v. 38, n. 8, p. 2369, doi. 10.1093/bioinformatics/btac097
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- Publication type:
- Article
AlzCode: a platform for multiview analysis of genes related to Alzheimer's disease.
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- Bioinformatics, 2022, v. 38, n. 7, p. 2030, doi. 10.1093/bioinformatics/btac033
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- Publication type:
- Article
EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks.
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- Bioinformatics, 2022, v. 38, n. 5, p. 1312, doi. 10.1093/bioinformatics/btab829
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- Publication type:
- Article
MoNET: an R package for multi-omic network analysis.
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- Bioinformatics, 2022, v. 38, n. 4, p. 1165, doi. 10.1093/bioinformatics/btab722
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- Publication type:
- Article
Phylotranscriptomic patterns of network stochasticity and pathway dynamics during embryogenesis.
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- Bioinformatics, 2022, v. 38, n. 3, p. 763, doi. 10.1093/bioinformatics/btab735
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- Publication type:
- Article
SWIMmeR: an R-based software to unveiling crucial nodes in complex biological networks.
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- Bioinformatics, 2022, v. 38, n. 2, p. 586, doi. 10.1093/bioinformatics/btab657
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- Publication type:
- Article
Node similarity-based graph convolution for link prediction in biological networks.
- Published in:
- Bioinformatics, 2021, v. 37, n. 23, p. 4501, doi. 10.1093/bioinformatics/btab464
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- Publication type:
- Article
Visual exploration of large metabolic models.
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- Bioinformatics, 2021, v. 37, n. 23, p. 4460, doi. 10.1093/bioinformatics/btab335
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- Publication type:
- Article
PecanPy: a fast, efficient and parallelized Python implementation of node2vec.
- Published in:
- Bioinformatics, 2021, v. 37, n. 19, p. 3377, doi. 10.1093/bioinformatics/btab202
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- Publication type:
- Article
IRIS-FGM: an integrative single-cell RNA-Seq interpretation system for functional gene module analysis.
- Published in:
- Bioinformatics, 2021, v. 37, n. 18, p. 3045, doi. 10.1093/bioinformatics/btab108
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- Publication type:
- Article
Inference of gene regulatory networks using pseudo-time series data.
- Published in:
- Bioinformatics, 2021, v. 37, n. 16, p. 2423, doi. 10.1093/bioinformatics/btab099
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- Publication type:
- Article