Works about BIOINFORMATICS software

Results: 784

PMicroRNA-124a regulates LPS-induced septic cardiac dysfunction by targeting STX2.

Published in:

Biotechnology Letters, 2017, v. 39, n. 9, p. 1335, doi. 10.1007/s10529-017-2368-4

By:

Diao, Xiufang;
Sun, Shuqing

Publication type:

Article

Exosomal miR‐93 derived from hepatocellular carcinoma cell promotes the sorafenib resistance of hepatocellular carcinoma through PTEN/PI3K/Akt pathway.

Published in:

Journal of Biochemical & Molecular Toxicology, 2024, v. 38, n. 3, p. 1, doi. 10.1002/jbt.23666

By:

Bao, Yuanpeng;
Xu, Song;
Zhou, Junjing;
Zhao, Chongyong;
Dai, Saimin;
Zhang, Yong;
Rao, Min

Publication type:

Article

MiR‐452‐5p facilitates retinoblastoma cell growth and invasion via the SOCS3/JAK2/STAT3 pathway.

Published in:

Journal of Biochemical & Molecular Toxicology, 2023, v. 37, n. 12, p. 1, doi. 10.1002/jbt.23501

By:

Wu, Laiwei;
Huang, Guoqiang;
Hong, Huifeng;
Xu, Xiangzhou;
Lu, Xiaohe;
Li, Jing

Publication type:

Article

Long noncoding RNA HOXA‐AS2 mediates microRNA‐106b‐5p to repress sepsis‐engendered acute kidney injury.

Published in:

Journal of Biochemical & Molecular Toxicology, 2020, v. 34, n. 4, p. 1, doi. 10.1002/jbt.22453

By:

Wu, Huifeng;
Wang, Jing;
Ma, Zhen

Publication type:

Article

First report of molecular confirmation and phylogenetic analysis of ocular seteriasis in buffalo in India using 12S rRNA.

Published in:

Journal of Helminthology, 2023, v. 97, p. 1, doi. 10.1017/S0022149X23000512

By:

Anandu, S.;
Chaithra, S. N.;
Manjusha, K. M.;
Tiwari, V. K.;
Tewari, A. K.;
Tanuj, G. N.;
Samanta, S.;
Sankar, M.

Publication type:

Article

GlycoDomainViewer: a bioinformatics tool for contextual exploration of glycoproteomes.

Published in:

2018

By:

Joshi, Hiren J.;
Jørgensen, Anja;
Schjoldager, Katrine T.;
Halim, Adnan;
Dworkin, Leo A.;
Steentoft, Catharina;
Wandall, Hans H.;
Clausen, Henrik;
Vakhrushev, Sergey Y.

Publication type:

Product Review

捻转血矛线虫伊维菌素敏感虫株与耐药虫株差异 miRNA 的转录组学分析.

Published in:

Chinese Journal of Preventive Veterinary Medicine / Zhongguo Yufang Shouyi Xuebao, 2023, v. 45, n. 3, p. 245, doi. 10.3969/j.issn.1008-0589.202209001

By:

温海峰;
张艳敏;
张海龙;
石雅琴;
毛晓伟;
寇慧琳;
于宇;
李峥;
陈昕迪;
王腾宇;
高娃;
王文龙;
刘春霞

Publication type:

Article

伪狂犬病病毒感染小鼠的背根神经节后天然免疫相关转录组测序及分析.

Published in:

Chinese Journal of Preventive Veterinary Medicine / Zhongguo Yufang Shouyi Xuebao, 2022, v. 44, n. 6, p. 591, doi. 10.3969/j.issn.1008-0589.202111013

By:

王冰;
吴红霞;
李淼;
高莹;
袁梦淇;
仇华吉;
孙元

Publication type:

Article

A DESCRIPTIVE INSTITUTIONAL STUDY TO ASSESS AND IMPROVE MOTIVATION LEVEL OF STUDENTS WHILE USING ONLINE LEARNING PROGRAMS AT NIS (Chemistry and Biology), SHYMKENT KAZAKHSTAN.

Published in:

Indian Journal of Basic & Applied Medical Research, 2021, v. 10, n. 2, p. 103, doi. 10.36848/IJBAMR/2020/26215.55615

By:

Zharmukhanbetov, Serik;
Shekhawat, Kirti;
Absadykova, Nassiba;
Shyngiskhan, Baiseit;
Acharya, Dr Rekha;
Singh, Chandan pal

Publication type:

Article

申克孢子丝菌PalI 和PalI 样蛋白生物信息学分析.

Published in:

Mycosystema, 2019, v. 38, n. 8, p. 1350, doi. 10.13346/j.mycosystema.190064

By:

詹蔚;
刘鹏;
吴晓雁;
李玉哲;
黄怀球

Publication type:

Article

The complete chloroplast genome of Photinia davidsoniae: molecular structures and comparative analysis.

Published in:

Mitochondrial DNA: Resources, 2021, v. 6, n. 4, p. 1431, doi. 10.1080/23802359.2021.1911698

By:

Li, Jingling;
Jiang, Mei;
Wang, Liqiang;
Yu, Jie;
Chen, Haimei;
Liu, Jingting;
Liu, Chang

Publication type:

Article

Improving Performance of Hardware Accelerators by Optimizing Data Movement: A Bioinformatics Case Study.

Published in:

Electronics (2079-9292), 2023, v. 12, n. 3, p. 586, doi. 10.3390/electronics12030586

By:

Knoben, Peter;
Alachiotis, Nikolaos

Publication type:

Article

آنالیز ژنتیکی ژنهای پپتید سنتتاز (‏NRPSs‏) در بیوسنتز محصولات طبیعی سیانوباکتری های دریاچه ‏لواسان

Published in:

Biological Journal of Microorganism, 2019, v. 8, n. 30, p. 26

By:

بهاره نوروزی;
عباس اخوان;
غزاله سلطانی

Publication type:

Article

Identification of Key Biomarkers and Candidate Molecules in Non-Small-Cell Lung Cancer by Integrated Bioinformatics Analysis.

Published in:

Genetics Research, 2023, p. 1, doi. 10.1155/2023/6782732

By:

Yu, Liyan;
Liang, Xuemei;
Wang, Jianwei;
Ding, Guangxiang;
Tang, Jinhai;
Xue, Juan;
He, Xin;
Ge, Jingxuan;
Jin, Xianzhang;
Yang, Zhiyi;
Li, Xianwei;
Yao, Hehuan;
Yin, Hongtao;
Liu, Wu;
Yin, Shengchen;
Sun, Bing;
Sheng, Junxiu

Publication type:

Article

Identification of the Exercise and Time Effects on Human Skeletal Muscle through Bioinformatics Methods.

Published in:

Genetics Research, 2022, p. 1, doi. 10.1155/2022/9582363

By:

Feng, Mufang;
Ji, Jie;
Li, Xiaoliu;
Ye, Xinming

Publication type:

Article

Bioinformatics Analysis of Exercise-Related Biomarkers in Diabetes.

Published in:

Genetics Research, 2022, p. 1, doi. 10.1155/2022/1273153

By:

Bao, Xiaoju;
Qiu, Jingyue;
Xuan, Qin;
Ye, Xinming

Publication type:

Article

Identification in silico of miRNAs and their targets involved in the development of osteoarthritis.

Published in:

Journal of Osteoporosis & Mineral Metabolism / Revista de Osteoporosis y Metabolismo Mineral (Spanish edition), 2025, v. 17, n. 1, p. 8, doi. 10.20960/RevOsteoporosMetabMiner.00064

By:

Rafael Carrillo-Patiño, Sergio;
Carolina Román-Carraro, Fiordaliso;
Fernando Montes-García, Juan;
Alicia Ballinas-Verdugo, Martha;
Eduardo Justo-Frausto, José;
López-Espinosa, Emma;
Frank Jiménez-Ortega, Rogelio

Publication type:

Article

A bioinformatics analysis and experimental validation of PDGFD as a promising diagnostic biomarker for acute myeloid leukemia.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-99038-0

By:

Yang, Lulu;
Ren, Shuangshuang;
Lou, Lijiang;
He, Jiasu;
Huang, Qianlei;
Wu, Xiaojin;
Zhao, Ranran

Publication type:

Article

Exploring the Potency of Jatropha Seed Meal (Jatropha curcas) as a Chemopreventive Agent through Metastatic Inhibition: A Bioinformatics Approach.

Published in:

Indonesian Journal of Pharmacy / Majalah Farmasi Indonesia, 2022, v. 33, n. 3, p. 434

By:

Nangimi, Ana Fiin;
Tafrihani, Ahmad Syauqy;
Adisusilo, Midory Rahmadhany Putri;
Jenie, Riris Istighfari

Publication type:

Article

Bioinformatics Analysis Uncovers the Importance of RTK-RAS-PI3K/Akt Regulation by Borneol in Overcoming Breast Cancer Resistance to Tamoxifen.

Published in:

Indonesian Journal of Pharmacy / Majalah Farmasi Indonesia, 2022, v. 33, n. 1, p. 135

By:

Ali, Zulfikar;
Hermawan, Adam

Publication type:

Article

Metaphor—A workflow for streamlined assembly and binning of metagenomes.

Published in:

GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad055

By:

Salazar, Vinícius W;
Shaban, Babak;
Quiroga, Maria del Mar;
Turnbull, Robert;
Tescari, Edoardo;
Rossetto Marcelino, Vanessa;
Verbruggen, Heroen;
Lê Cao, Kim-Anh

Publication type:

Article

biotoolsSchema: a formalized schema for bioinformatics software description.

Published in:

GigaScience, 2021, v. 10, n. 1, p. 1, doi. 10.1093/gigascience/giaa157

By:

Ison, Jon;
Ienasescu, Hans;
Rydza, Emil;
Chmura, Piotr;
Rapacki, Kristoffer;
Gaignard, Alban;
Schwämmle, Veit;
van Helden, Jacques;
Kalaš, Matúš;
Ménager, Hervé

Publication type:

Article

GenPipes: an open-source framework for distributed and scalable genomic analyses.

Published in:

GigaScience, 2019, v. 8, n. 6, p. 1, doi. 10.1093/gigascience/giz037

By:

Bourgey, Mathieu;
Dali, Rola;
Eveleigh, Robert;
Chen, Kuang Chung;
Letourneau, Louis;
Fillon, Joel;
Michaud, Marc;
Caron, Maxime;
Sandoval, Johanna;
Lefebvre, Francois;
Leveque, Gary;
Mercier, Eloi;
Bujold, David;
Marquis, Pascale;
Van, Patrick Tran;
Anderson de Lima Morais, David;
Tremblay, Julien;
Shao, Xiaojian;
Henrion, Edouard;
Gonzalez, Emmanuel

Publication type:

Article

Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets.

Published in:: GigaScience, 2016, v. 5, n. 1, p. 1, doi. 10.1186/s13742-016-0133-6
Publication type:: Article

Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets.

Published in:

GigaScience, 2016, v. 5, p. 1, doi. 10.1186/s13742-016-0133-6

By:

Rideout, Jai Ram;
Chase, John H.;
Bolyen, Evan;
Ackermann, Gail;
González, Antonio;
Knight, Rob;
Caporaso, J. Gregory

Publication type:

Article

Molecular profiling of clinical remission in psoriatic arthritis reveals dysregulation of FOS and CCDC50 genes: a gene expression study.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1274539

By:

Angioni, Maria Maddalena;
Floris, Alberto;
Cangemi, Ignazio;
Congia, Mattia;
Chessa, Elisabetta;
Naitza, Micaela Rita;
Piga, Matteo;
Cauli, Alberto

Publication type:

Article

ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.618478

By:

Lu, Rita Jui-Hsien;
Liu, Yen-Ting;
Huang, Chih Wei;
Yen, Ming-Ren;
Lin, Chung-Yen;
Chen, Pao-Yang

Publication type:

Article

Reply to: Inaccurate viral prediction leads to overestimated diversity of the archaeal virome in the human gut.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49903-9

By:

Wang, Yongming;
Li, Ran;
Ma, Yingfei

Publication type:

Article

Deploying and sharing U-Compare workflows as web services.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-7

By:

Kontonatsios, Georgios;
Korkontzelos, Ioannis;
Kolluru, BalaKrishna;
Thompson, Paul;
Ananiadou, Sophia

Publication type:

Article

Downregulation of miR-106b-3p increases sensitivity to cisplatin in esophageal cancer cells by targeting TGM3.

Published in:

Molecular Medicine Reports, 2021, v. 23, n. 6, p. N.PAG, doi. 10.3892/mmr.2021.12110

By:

Zhu, Yong;
Zhang, Yun;
Li, Xiaohua;
Su, Yuntao;
Wang, Nina;
Chen, Minli;
Yang, Zhe

Publication type:

Article

lncRNA LIFR-AS1 inhibits gastric carcinoma cell proliferation, migration and invasion by sponging miR-4698.

Published in:

Molecular Medicine Reports, 2021, v. 23, n. 2, p. N.PAG

By:

Zhao, Jiangqiao;
Li, Xiaoning;
Fu, Liping;
Zhang, Na;
Yang, Jiaping;
Cai, Jianhui

Publication type:

Article

Upregulation of microRNA-140-3p mediates dachshund family transcription factor 1 expression in immunoglobulin A nephropathy through cell cycle-dependent mechanisms.

Published in:

Molecular Medicine Reports, 2021, v. 23, n. 2, p. N.PAG

By:

Zhou, Xiaobin;
Lu, Yao;
Guo, Pengfei;
Zhou, Chenglin

Publication type:

Article

miR-92a-3p regulates trypsinogen activation via Egr1 in AR42J cells.

Published in:

Molecular Medicine Reports, 2019, v. 20, n. 5, p. 4140, doi. 10.3892/mmr.2019.10673

By:

Zhang, Xueming;
Gao, Bo;
Huang, Yang;
Zhang, Yong;
Li, Zhituo;
Zhao, Dali;
Ma, Biao;
Xue, Dongbo;
Zhang, Weihui

Publication type:

Article

Aberrant expression of miR-130a-3p in ankylosing spondylitis and its role in regulating T-cell survival.

Published in:

Molecular Medicine Reports, 2019, v. 20, n. 4, p. 3388, doi. 10.3892/mmr.2019.10573

By:

Li, Fengju;
Si, Dingran;
Guo, Xuejun;
Guo, Ningru;
Li, Dandan;
Zhang, Liujing;
Jian, Xianan;
Ma, Jiasheng

Publication type:

Article

The role and mechanism of microRNA-18a-5p in oral squamous cell carcinoma.

Published in:

Molecular Medicine Reports, 2019, v. 20, n. 2, p. 1637, doi. 10.3892/mmr.2019.10403

By:

Huang, Chenyao;
Song, Hongning;
Lai, Linfeng

Publication type:

Article

Differences in molecular regulation between osteochondroma and bizarre parosteal osteochondromatous proliferation.

Published in:

Molecular Medicine Reports, 2017, v. 16, n. 1, p. 801, doi. 10.3892/mmr.2017.6634

By:

Xinrong Zhou;
Lihui Deng;
Xinsheng Han;
Yi Chen;
Jiao Wang;
Shengnan Du

Publication type:

Article

Temporal Trends in HIV-1 Subtypes and Antiretroviral Drug Resistance Mutations in Istanbul, Türkiye (2021–2024): A Next-Generation Sequencing Study.

Published in:

Viruses (1999-4915), 2025, v. 17, n. 4, p. 478, doi. 10.3390/v17040478

By:

Yaman, Murat;
Gülcen, Begüm Saran;
Özgüler, Kübra;
Köksal, Muammer Osman;
Tekol, Serap Demir;
İlki, Arzu

Publication type:

Article

High-Performance Genome Annotation for a Safer and Faster-Developing Phage Therapy.

Published in:

Viruses (1999-4915), 2025, v. 17, n. 3, p. 314, doi. 10.3390/v17030314

By:

Culot, Antoine;
Abriat, Guillaume;
Furlong, Kieran P.

Publication type:

Article

Identification and Analysis of Biomarkers Associated with Lipophagy and Therapeutic Agents for COVID-19.

Published in:

Viruses (1999-4915), 2024, v. 16, n. 6, p. 923, doi. 10.3390/v16060923

By:

Wu, Yujia;
Wu, Zhenlin;
Jin, Qiying;
Liu, Jinyuan;
Xu, Peiping

Publication type:

Article

Combining MOE Bioinformatics Analysis and In Vitro Pseudovirus Neutralization Assays to Predict the Neutralizing Ability of CV30 Monoclonal Antibody on SARS-CoV-2 Variants.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 7, p. 1565, doi. 10.3390/v15071565

By:

Zhu, Yajuan;
Xiong, Husheng;
Liu, Shuang;
Wu, Dawei;
Zhang, Xiaomin;
Shi, Xiaolu;
Qu, Jing;
Chen, Long;
Liu, Zheng;
Peng, Bo;
Zhang, Dingmei

Publication type:

Article

Genetic Variation Analysis of Porcine Circovirus Type 4 in South China in 2019 to 2021.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 8, p. 1736, doi. 10.3390/v14081736

By:

Wu, Minhui;
Chen, Yujie;
Lang, Wen;
Qin, Xinyun;
Ruan, Lian;
Su, Mengrong;
Lv, Qizhuang

Publication type:

Article

Implementation of GA-VirReport, a Web-Based Bioinformatics Toolkit for Post-Entry Quarantine Screening of Virus and Viroids in Plants.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 7, p. N.PAG, doi. 10.3390/v14071480

By:

Lelwala, Ruvini V.;
LeBlanc, Zacharie;
Gauthier, Marie-Emilie A.;
Elliott, Candace E.;
Constable, Fiona E.;
Murphy, Greg;
Tyle, Callum;
Dinsdale, Adrian;
Whattam, Mark;
Pattemore, Julie;
Barrero, Roberto A.

Publication type:

Article

The International Virus Bioinformatics Meeting 2022.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 5, p. 973, doi. 10.3390/v14050973

By:

Hufsky, Franziska;
Beslic, Denis;
Boeckaerts, Dimitri;
Duchene, Sebastian;
González-Tortuero, Enrique;
Gruber, Andreas J.;
Guo, Jiarong;
Jansen, Daan;
Juma, John;
Kongkitimanon, Kunaphas;
Luque, Antoni;
Ritsch, Muriel;
Lencioni Lovate, Gabriel;
Nishimura, Luca;
Pas, Célia;
Domingo, Esteban;
Hodcroft, Emma;
Lemey, Philippe;
Sullivan, Matthew B.;
Weber, Friedemann

Publication type:

Article

Differential CircRNA Screening and Identification of Subcutaneous Fat Tissue in Plateau-type Yaks under Different Feeding Methods.

Published in:

Indian Journal of Animal Research, 2025, v. 59, n. 4, p. 597, doi. 10.18805/IJAR.BF-1845

By:

Weiqin Ding;
Yonggang Sun;
Yincang Han;
Yaqian Liu;
Shengwei Jin

Publication type:

Article

A Missense Mutation in IRS1 is Associated with the Development of Early-Onset Type 2 Diabetes.

Published in:

International Journal of Endocrinology, 2020, p. 1, doi. 10.1155/2020/9569126

By:

Li, Juyi;
Sun, Shan;
Wang, Xiufang;
Li, Yarong;
Zhu, Hong;
Zhang, Hongmei;
Deng, Aiping

Publication type:

Article

Cloning and Characterization of Two Inhibitors of Apoptosis (IAP) from Eriocheir hepuensis and Their Expression Pattern in the Immune Organs under Azadirachtin Stress.

Published in:

Aquaculture Research, 2023, p. 1, doi. 10.1155/2023/2507844

By:

Lan, Zhenyu;
Mao, Meiqin;
Liang, Qi;
Ma, Zihang;
Zhang, Zining;
Liang, Ziwei;
Chen, Boyu;
Fu, Qianni;
Zhou, Qinlan;
Zhang, Yan;
Zhu, Peng;
Liao, Yongyan

Publication type:

Article

NGSpop: A desktop software that supports population studies by identifying sequence variations from next-generation sequencing data.

Published in:

PLoS ONE, 2022, v. 17, n. 11, p. 1, doi. 10.1371/journal.pone.0260908

By:

Lee, Dong-Jun;
Kwon, Taesoo;
Lee, Hye-Jin;
Oh, Yun-Ho;
Kim, Jin-Hyun;
Lee, Tae-Ho

Publication type:

Article

ATF4 promotes brain vascular smooth muscle cells proliferation, invasion and migration by targeting miR-552-SKI axis.

Published in:

PLoS ONE, 2022, v. 17, n. 7, p. 1, doi. 10.1371/journal.pone.0270880

By:

Feng, Meina;
Zhou, Qin;
Tu, Wenxian;
Wang, Yunfeng;
Du, Yuanmin;
Xu, Kang

Publication type:

Article

TextFormats: Simplifying the definition and parsing of text formats in bioinformatics.

Published in:

PLoS ONE, 2022, v. 17, n. 5, p. 1, doi. 10.1371/journal.pone.0268910

By:

Gonnella, Giorgio

Publication type:

Article

Comprehensive analysis of GSEC/miR-101-3p/SNX16/PAPOLG axis in hepatocellular carcinoma.

Published in:

PLoS ONE, 2022, v. 17, n. 4, p. 1, doi. 10.1371/journal.pone.0267117

By:

Hu, Shangshang;
Zhang, Jinyan;
Guo, Guoqing;
Zhang, Li;
Dai, Jing;
Gao, Yu

Publication type:

Article