Works about BIOINFORMATICS software

Results: 767

Utilization of systematic error-assessment software to improve phylogenetic accuracy.

Published in:

Journal of Bioinformatics & Computational Biology, 2024, v. 22, n. 2, p. 1, doi. 10.1142/S0219720024500082

By:

Kim, Hayeon;
Lee, Junghwan;
Je, Mikyeong;
Cho, Myeongji;
Son, Hyeon S.

Publication type:

Article

PROGRESS IN COMPUTATIONAL STUDIES OF HOST-PATHOGEN INTERACTIONS.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 2, p. 1, doi. 10.1142/S0219720012300018

By:

HUFENG ZHOU;
JINGJING JIN;
LIMSOON WONG

Publication type:

Article

INTRODUCTION - Some New Results and Tools for Protein Function Prediction, RNA Target Site Prediction, Genotype Calling, Environmental Genomics, and More.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. v, doi. 10.1142/S021972001100580X

By:

Wong, Limsoon

Publication type:

Article

PMicroRNA-124a regulates LPS-induced septic cardiac dysfunction by targeting STX2.

Published in:

Biotechnology Letters, 2017, v. 39, n. 9, p. 1335, doi. 10.1007/s10529-017-2368-4

By:

Diao, Xiufang;
Sun, Shuqing

Publication type:

Article

In silico Analysis of Molecular Phylogeny of Genes Involved in the Synthesis of Bioactive Compounds in Cyanobacteria Strains Located in Tehran Cascade.

Published in:

Jentashapir Journal of Cellular & Molecular Biology, 2023, v. 14, n. 1, p. 1, doi. 10.5812/jjcmb-132400

By:

Nowruzi, Bahareh;
Afshari, Ghazal

Publication type:

Article

Huntington Hastalığı ile İlişkili ERN1 ve TRAF2 Genlerindeki Yanlış Anlamlı SNP'lerin In Silico Değerlendirilmesi.

Published in:

Bilecik Seyh Edebali University Journal of Science / Bilecik Şeyh Edebali Üniversitesi Sosyal Bilimler Dergisi, 2024, v. 11, n. 2, p. 244, doi. 10.35193/bseufbd.1329328

By:

Tanrıverdi, Nurbanu;
Karasakal, Ömer Faruk;
Karahan, Mesut

Publication type:

Article

A DESCRIPTIVE INSTITUTIONAL STUDY TO ASSESS AND IMPROVE MOTIVATION LEVEL OF STUDENTS WHILE USING ONLINE LEARNING PROGRAMS AT NIS (Chemistry and Biology), SHYMKENT KAZAKHSTAN.

Published in:

Indian Journal of Basic & Applied Medical Research, 2021, v. 10, n. 2, p. 103, doi. 10.36848/IJBAMR/2020/26215.55615

By:

Zharmukhanbetov, Serik;
Shekhawat, Kirti;
Absadykova, Nassiba;
Shyngiskhan, Baiseit;
Acharya, Dr Rekha;
Singh, Chandan pal

Publication type:

Article

申克孢子丝菌PalI 和PalI 样蛋白生物信息学分析.

Published in:

Mycosystema, 2019, v. 38, n. 8, p. 1350, doi. 10.13346/j.mycosystema.190064

By:

詹蔚;
刘鹏;
吴晓雁;
李玉哲;
黄怀球

Publication type:

Article

The Human Ageing Genomic Resources: online databases and tools for biogerontologists.

Published in:

Aging Cell, 2009, v. 8, n. 1, p. 65, doi. 10.1111/j.1474-9726.2008.00442.x

By:

de Magalhães, João Pedro;
Budovsky, Arie;
Lehmann, Gilad;
Costa, Joana;
Li, Yang;
Fraifeld, Vadim;
Church, George M.

Publication type:

Article

Phenotypic and genotypic characterization of Lactobacilli and Pediococci isolated from traditional Algerian fermentation products.

Published in:

South Asian Journal of Experimental Biology, 2020, v. 10, n. 2, p. 95, doi. 10.38150/sajeb.10(2).p95-103

By:

Adjoudj, F.;
Guessas, B.;
Spano, Giuseppe;
Capozzi, Vittorio;
Kihal, M.

Publication type:

Article

鱼源荧光假单胞菌分泌蛋白的全基因组预测与功能分析.

Published in:

Journal of Chinese Institute of Food Science & Technology / Zhongguo Shipin Xuebao, 2024, v. 24, n. 9, p. 434, doi. 10.16429/j.1009-7848.2024.09.040

By:

李秋莹;
张雪婷;
崔方超;
檀茜倩;
孙彤;
励建荣

Publication type:

Article

Clinical bioinformatics. Part II: A software-aided approach.

Published in:

Oncolog-Hematolog, 2020, n. 52, p. 39

By:

Dumitrescu, Iolanda

Publication type:

Article

A novel community driven software for functional enrichment analysis of extracellular vesicles data.

Published in:

Journal of Extracellular Vesicles, 2017, v. 6, n. 1, p. N.PAG, doi. 10.1080/20013078.2017.1321455

By:

Pathan, Mohashin;
Keerthikumar, Shivakumar;
Chisanga, David;
Alessandro, Riccardo;
Ang, Ching-Seng;
Askenase, Philip;
Batagov, Arsen O.;
Benito-Martin, Alberto;
Camussi, Giovanni;
Clayton, Aled;
Collino, Federica;
Di Vizio, Dolores;
Falcon-Perez, Juan Manuel;
Fonseca, Pedro;
Fonseka, Pamali;
Fontana, Simona;
Gho, Yong Song;
Hendrix, An;
Hoen, Esther Nolte-'t;
Iraci, Nunzio

Publication type:

Article

Circular RNA circ_0029589 promotes ox-LDL-induced endothelial cell injury through regulating RAB22A by serving as a sponge of miR-1197.

Published in:

Clinical Hemorheology & Microcirculation, 2023, v. 83, n. 4, p. 359, doi. 10.3233/CH-221657

By:

He, Dequan;
Li, Zhiliang;
Chen, Youquan;
Huang, Ming

Publication type:

Article

Genetic analysis and literature review of a Poirier–Bienvenu neurodevelopmental syndrome family line caused by a de novo frameshift variant in CSNK2B.

Published in:

Molecular Genetics & Genomic Medicine, 2024, v. 12, n. 1, p. 1, doi. 10.1002/mgg3.2327

By:

Li, Danyang;
Zhou, Bingbo;
Tian, Xinyuan;
Chen, Xue;
Wang, Yupei;
Hao, Shengju;
Zhang, Chuan;
Hui, Ling

Publication type:

Article

Clinical characteristics and identification of a novel TGFB1 variant in three unrelated Chinese families with Camurati‐Engelmann disease.

Published in:

Molecular Genetics & Genomic Medicine, 2022, v. 10, n. 5, p. 1, doi. 10.1002/mgg3.1922

By:

Tao, Xiao‐Hui;
Yang, Xing‐Guang;
Wang, Zi‐Yuan;
Xu, Yang;
Lin, Xiao‐Yun;
Xu, Tian;
Zhang, Zhen‐Lin;
Yue, Hua

Publication type:

Article

Variant analysis of PEX11B gene from a family with peroxisome biogenesis disorder 14B by whole exome sequencing.

Published in:

Molecular Genetics & Genomic Medicine, 2020, v. 8, n. 1, p. N.PAG, doi. 10.1002/mgg3.1042

By:

Tian, Yuan;
Zhang, Linlin;
Li, Ying;
Gao, Jinshuang;
Yu, Haiyang;
Guo, Yaqing;
Jia, Liting

Publication type:

Article

Screening and verification of hub genes in esophageal squamous cell carcinoma by integrated analysis.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-57320-7

By:

Wu, Hongqiang;
Zhu, Peiyao;
Shu, Peng;
Zhang, Shuguang

Publication type:

Article

Identification of oxidative stress-related biomarkers associated with the development of acute-on-chronic liver failure using bioinformatics.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-44343-9

By:

Zhu, Zongyi;
Jiang, Huiqing

Publication type:

Article

Adhesion-regulating molecule 1 (ADRM1) can be a potential biomarker and target for bladder cancer.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-41992-8

By:

Yu, Qing-xin;
Wang, Jiao-chen;
Liu, Jun-fei;
Ye, Lu-xia;
Guo, Yi-qing;
Zheng, Hai-hong

Publication type:

Article

Bioinformatics analysis of immune cell infiltration patterns and potential diagnostic markers in atherosclerosis.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-47257-8

By:

Ji, Haigang;
Yuan, Ling;
Jiang, Wenbo;
Jiang, Yinke;
Jiang, Mengke;
Sun, Xuemei;
Chen, Jing

Publication type:

Article

Identification of oxidative stress-related biomarkers associated with the development of acute-on-chronic liver failure using bioinformatics.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-44343-9

By:

Zhu, Zongyi;
Jiang, Huiqing

Publication type:

Article

Identification and verification of genes associated with hypoxia microenvironment in Alzheimer's disease.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-43595-9

By:

Yuan, Mingyang;
Feng, Yanjin;
Zhao, Mingri;
Xu, Ting;
Li, Liuhong;
Guo, Ke;
Hou, Deren

Publication type:

Article

Adhesion-regulating molecule 1 (ADRM1) can be a potential biomarker and target for bladder cancer.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-41992-8

By:

Yu, Qing-xin;
Wang, Jiao-chen;
Liu, Jun-fei;
Ye, Lu-xia;
Guo, Yi-qing;
Zheng, Hai-hong

Publication type:

Article

Exploring the mechanism of aloe-emodin in the treatment of liver cancer through network pharmacology and cell experiments.

Published in:

Frontiers in Pharmacology, 2023, p. 1, doi. 10.3389/fphar.2023.1238841

By:

Mingyang Zhu;
Qingmin He;
Yanan Wang;
Liying Duan;
Kang Rong;
Yingying Wu;
Ye Ding;
Yang Mi;
Xiaoyang Ge;
Xiaocui Yang;
Yong Yu

Publication type:

Article

Is type III prostatitis also associated with bacterial infection?

Published in:

Frontiers in Cellular & Infection Microbiology, 2023, p. 1, doi. 10.3389/fcimb.2023.1189081

By:

Wei-Jie Song;
Jun Gao;
Ji-Wei Huang;
Yuan Liu;
Zhi Long;
Le-Ye He

Publication type:

Article

Designing novel construction for cell surface display of protein E on Escherichia coli using non-classical pathway based on Lpp-OmpA.

Published in:

AMB Express, 2017, v. 7, n. 1, p. 1, doi. 10.1186/s13568-017-0350-0

By:

Jeiranikhameneh, Meisam;
Razavi, Mohamad;
Irani, Shiva;
Siadat, Seyed;
Oloomi, Mana

Publication type:

Article

Ursolic acid ameliorates Nthy-ori 3-1 cells injury induced by IL-1β through limiting MALAT1/miR-206/PTGS1 ceRNA network and NF-κB signaling pathway.

Published in:

Psychopharmacology, 2021, v. 238, n. 4, p. 1141, doi. 10.1007/s00213-021-05761-7

By:

Mou, Lunpan;
Liao, Liyan;
Zhang, Yaping;
Ming, Desong;
Jiang, Jianjia

Publication type:

Article

News from the Bioconductor Project.

Published in:: R Journal, 2015, v. 7, n. 2, p. 291
Publication type:: Article

News from the Bioconductor Project.

Published in:: 2015
Publication type:: Product Review

FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards.

Published in:

Journal of Biomedical Semantics, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13326-023-00289-5

By:

Gaignard, Alban;
Rosnet, Thomas;
De Lamotte, Frédéric;
Lefort, Vincent;
Devignes, Marie-Dominique

Publication type:

Article

Capturing domain knowledge from multiple sources: the rare bone disorders use case.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0008-2

By:

Groza, Tudor;
Tudorache, Tania;
Robinson, Peter N.;
Zankl, Andreas

Publication type:

Article

Deploying and sharing U-Compare workflows as web services.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-7

By:

Kontonatsios, Georgios;
Korkontzelos, Ioannis;
Kolluru, BalaKrishna;
Thompson, Paul;
Ananiadou, Sophia

Publication type:

Article

Developments on Core Collections of Plant Genetic Resources: Do We Know Enough?

Published in:

Forests (19994907), 2023, v. 14, n. 5, p. 926, doi. 10.3390/f14050926

By:

Gu, Rui;
Fan, Shaohui;
Wei, Songpo;
Li, Jiarui;
Zheng, Shihui;
Liu, Guanglu

Publication type:

Article

Artificial intelligence in plasma cell myeloma: Neural networks and support vector machines in the classification of plasma cell myeloma data at diagnosis.

Published in:

Journal of Pathology Informatics, 2021, v. 12, p. 35, doi. 10.4103/jpi.jpi_26_21

By:

Yenamandra, Ashwini;
Hughes, Caitlin;
Maris, Alexander

Publication type:

Article

Bibliometric and Bioinformatics Analysis of Renal Impairment in Multiple Myeloma: Trends and Research Hotspots, and Associated Genetic Pathways (2000-2023).

Published in:

Journal of Multidisciplinary Healthcare, 2025, v. 18, p. 1147, doi. 10.2147/JMDH.S501551

By:

Jiang, Huinan;
Bai, Xue

Publication type:

Article

Redescription and New Host Record of Heteraxinoides atlanticus (Monogenea: Heteraxinidae) from the Gills of Nemipterus japonicus (Bloch) and Its Systematics.

Published in:

Agricultural Science Digest, 2022, v. 42, n. 2, p. 203, doi. 10.18805/ag.D-5293

By:

Verma, A. K.;
Verma, J.

Publication type:

Article

Applications of Data Mining in the Bioinformatics Field: A Review.

Published in:

Quarterly Research Journal of Plant & Animal Sciences / Bhartiya Krishi Anusandhan Patrika, 2022, v. 37, n. 2, p. 121, doi. 10.18805/BKAP428

By:

Begam, Shbana;
Satpathy, Subhrajit;
Godara, Samarth;
Nigam, Sapna;
Dheeraj, Akshay;
Yuvaraj, I.;
Ashraful Haque, Md.;
Naha, Sanchita

Publication type:

Article

MolBridge: a program for identifying nonbonded interactions in small molecules and biomolecular structures.

Published in:

2014

By:

Kumar, Prasun;
Kailasam, Senthilkumar;
Chakraborty, Shaunak;
Bansal, Manju

Publication type:

Product Review

AMLnet, A deep-learning pipeline for the differential diagnosis of acute myeloid leukemia from bone marrow smears.

Published in:

Journal of Hematology & Oncology, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13045-023-01419-3

By:

Yu, Zebin;
Li, Jianhu;
Wen, Xiang;
Han, Yingli;
Jiang, Penglei;
Zhu, Meng;
Wang, Minmin;
Gao, Xiangli;
Shen, Dan;
Zhang, Ting;
Zhao, Shuqi;
Zhu, Yijing;
Tong, Jixiang;
Yuan, Shuchong;
Zhu, HongHu;
Huang, He;
Qian, Pengxu

Publication type:

Article

Identification of the Core Promoter Region of Human Foxg1 Gene.

Published in:

Biology Bulletin, 2023, v. 50, n. 5, p. 1064, doi. 10.1134/S1062359022603275

By:

Yuqing Wang;
Chen, Yan;
Liu, Yongxin;
Yang, Caiting;
Ma, Xueyan;
Lai, Mingming

Publication type:

Article

In silico identification and functional prediction of differentially expressed genes in South Asian populations associated with type 2 diabetes.

Published in:

PLoS ONE, 2023, v. 18, n. 12, p. 1, doi. 10.1371/journal.pone.0294399

By:

Rabby, Md. Golam;
Rahman, Md. Hafizur;
Islam, Md. Numan;
Kamal, Md. Mostafa;
Biswas, Mrityunjoy;
Bonny, Mantasa;
Hasan, Md. Mahmudul

Publication type:

Article

Integrated bioinformatics analyses identifying potential biomarkers for type 2 diabetes mellitus and breast cancer: In SIK1-ness and health.

Published in:

PLoS ONE, 2023, v. 18, n. 8, p. 1, doi. 10.1371/journal.pone.0289839

By:

Durrani, Ilhaam Ayaz;
Bhatti, Attya;
John, Peter

Publication type:

Article

Phylogenetic Analyses: A Toolbox Expanding towards Bayesian Methods.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/683509

By:

Aris-Brosou, Stéephane;
Xuhua Xia

Publication type:

Article

Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/619832

By:

Conesa, Ana;
Götz, Stefan

Publication type:

Article

The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/369601

By:

Bruskiewich, Richard;
Senger, Martin;
Davenport, Guy;
Ruiz, Manuel;
Rouard, Mathieu;
Hazekamp, Tom;
Takeya, Masaru;
Doi, Koji;
Satoh, Kouji;
Costa, Marcos;
Simon, Reinhard;
Balaji, Jayashree;
Akintunde, Akinnola;
Mauleon, Ramil;
Wanchana, Samart;
Shah, Trushar;
Anacleto, Mylah;
Portugal, Arllet;
Ulat, Victor Jun;
Thongjuea, Supat

Publication type:

Article

Cross-Chip Probe Matching Tool: A Web-Based Tool for Linking Microarray Probes within and across Plant Species.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/451327

By:

Ghanekar, Ruchi;
Srinivasasainagendra, Vinodh;
Page, Grier P.

Publication type:

Article

Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data II: Analysis Beyond Single Gene.

Published in:

International Journal of Plant Genomics, 2008, v. 2008, p. 1, doi. 10.1155/2008/893941

By:

Coulibaly, Issa;
Page, Grier P.

Publication type:

Article

LncRNA SOX21-AS1 accelerates endometrial carcinoma progression through the miR-7-5p/RAF1 pathway.

Published in:

World Journal of Surgical Oncology, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12957-023-03114-6

By:

Sun, Meng;
Chen, Dongxu;
Chen, Youguo;
Wu, Yibo

Publication type:

Article

Amino acid size, charge, hydropathy indices and matrices for protein structure analysis.

Published in:

Theoretical Biology & Medical Modelling, 2006, v. 3, p. 15, doi. 10.1186/1742-4682-3-15

By:

Biro, J. C.

Publication type:

Article