Works matching DE "BIOCONDUCTOR (Computer software)"
Results: 136
Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays.
- Published in:
- 2010
- By:
- Publication type:
- Case Study
A collection of bioconductor methods to visualizegene-list annotations.
- Published in:
- BMC Research Notes, 2010, v. 3, p. 10, doi. 10.1186/1756-0500-3-10
- By:
- Publication type:
- Article
A Review of Meta-Analysis Packages in R.
- Published in:
- Journal of Educational & Behavioral Statistics, 2017, v. 42, n. 2, p. 206, doi. 10.3102/1076998616674315
- By:
- Publication type:
- Article
cisPath: an R/Bioconductor package for cloud users for visualization and management of functional protein interaction networks.
- Published in:
- BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/1752-0509-9-S1-S1
- By:
- Publication type:
- Article
Orchestrating high-throughput genomic analysis with Bioconductor.
- Published in:
- Nature Methods, 2015, v. 12, n. 2, p. 115, doi. 10.1038/nmeth.3252
- By:
- Publication type:
- Article
Fetal asphyctic preconditioning alters the transcriptional response to perinatal asphyxia.
- Published in:
- BMC Neuroscience, 2014, v. 15, n. 1, p. 2, doi. 10.1186/1471-2202-15-67
- By:
- Publication type:
- Article
ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.
- Published in:
- BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-4559-3
- By:
- Publication type:
- Article
ToPASeq: an R package for topology-based pathway analysis of microarray and RNA-Seq data.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0763-1
- By:
- Publication type:
- Article
DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0749-z
- By:
- Publication type:
- Article
mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0719-5
- By:
- Publication type:
- Article
diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0683-0
- By:
- Publication type:
- Article
AllelicImbalance: an R/ bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0620-2
- By:
- Publication type:
- Article
Semi-supervised adaptive-height snipping of the hierarchical clustering tree.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 412, doi. 10.1186/s12859-014-0448-1
- By:
- Publication type:
- Article
spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-81
- By:
- Publication type:
- Article
The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-15-S1-S11
- By:
- Publication type:
- Article
puma 3.0: improved uncertainty propagation methods for gene and transcript expression analysis.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-39
- By:
- Publication type:
- Article
An intuitive Python interface for Bioconductor libraries demonstrates the utility of language translators.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S11
- By:
- Publication type:
- Article
DFP: a Bioconductor package for fuzzy profile identification and gene reduction of microarray data.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-37
- By:
- Publication type:
- Article
scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data.
- Published in:
- PLoS Computational Biology, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pcbi.1006361
- By:
- Publication type:
- Article
beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types.
- Published in:
- PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006135
- By:
- Publication type:
- Article
runibic: a Bioconductor package for parallel row-based biclustering of gene expression data.
- Published in:
- Bioinformatics, 2018, v. 34, n. 24, p. 4302, doi. 10.1093/bioinformatics/bty512
- By:
- Publication type:
- Article
GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor.
- Published in:
- Bioinformatics, 2018, v. 34, n. 18, p. 3208, doi. 10.1093/bioinformatics/bty311
- By:
- Publication type:
- Article
DEsingle for detecting three types of differential expression in single-cell RNA-seq data.
- Published in:
- Bioinformatics, 2018, v. 34, n. 18, p. 3223, doi. 10.1093/bioinformatics/bty332
- By:
- Publication type:
- Article
CTDquerier: a bioconductor R package for Comparative Toxicogenomics DatabaseTM data extraction, visualization and enrichment of environmental and toxicological studies.
- Published in:
- Bioinformatics, 2018, v. 34, n. 18, p. 3235, doi. 10.1093/bioinformatics/bty326
- By:
- Publication type:
- Article
diffloop: a computational framework for identifying and analyzing differential DNA loops from sequencing data.
- Published in:
- Bioinformatics, 2018, v. 34, n. 4, p. 672, doi. 10.1093/bioinformatics/btx623
- By:
- Publication type:
- Article
Identification and visualization of differential isoform expression in RNA-seq time series.
- Published in:
- Bioinformatics, 2018, v. 34, n. 3, p. 524, doi. 10.1093/bioinformatics/btx578
- By:
- Publication type:
- Article
clustComp, a bioconductor package for the comparison of clustering results.
- Published in:
- Bioinformatics, 2017, v. 33, n. 24, p. 4001, doi. 10.1093/bioinformatics/btx532
- By:
- Publication type:
- Article
ClusterSignificance: a bioconductor package facilitating statistical analysis of class cluster separations in dimensionality reduced data.
- Published in:
- Bioinformatics, 2017, v. 33, n. 19, p. 3126, doi. 10.1093/bioinformatics/btx393
- By:
- Publication type:
- Article
RankProd 2.0: a refactored bioconductor package for detecting differentially expressed features in molecular profiling datasets.
- Published in:
- Bioinformatics, 2017, v. 33, n. 17, p. 2774, doi. 10.1093/bioinformatics/btx292
- By:
- Publication type:
- Article
twoddpcr: an R/Bioconductor package and Shiny app for Droplet Digital PCR analysis.
- Published in:
- Bioinformatics, 2017, v. 33, n. 17, p. 2743, doi. 10.1093/bioinformatics/btx308
- By:
- Publication type:
- Article
SeqArray--a storage-efficient high-performance data format for WGS variant calls.
- Published in:
- Bioinformatics, 2017, v. 33, n. 15, p. 2251, doi. 10.1093/bioinformatics/btx145
- By:
- Publication type:
- Article
DeepBlueR: large-scale epigenomic analysis in R.
- Published in:
- Bioinformatics, 2017, v. 33, n. 13, p. 2063, doi. 10.1093/bioinformatics/btx099
- By:
- Publication type:
- Article
annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq.
- Published in:
- Bioinformatics, 2017, v. 33, n. 10, p. 1570, doi. 10.1093/bioinformatics/btx016
- By:
- Publication type:
- Article
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R.
- Published in:
- Bioinformatics, 2017, v. 33, n. 8, p. 1179, doi. 10.1093/bioinformatics/btw777
- By:
- Publication type:
- Article
miRNAmeConverter: an R/bioconductor package for translating mature miRNA names to different miRBase versions.
- Published in:
- Bioinformatics, 2017, v. 33, n. 4, p. 592, doi. 10.1093/bioinformatics/btw660
- By:
- Publication type:
- Article
Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi.
- Published in:
- Bioinformatics, 2017, v. 33, n. 4, p. 558, doi. 10.1093/bioinformatics/btw691
- By:
- Publication type:
- Article
QUBIC: a bioconductor package for qualitative biclustering analysis of gene co-expression data.
- Published in:
- Bioinformatics, 2017, v. 33, n. 3, p. 450, doi. 10.1093/bioinformatics/btw635
- By:
- Publication type:
- Article
GenVisR: Genomic Visualizations in R.
- Published in:
- Bioinformatics, 2016, v. 32, n. 19, p. 3012, doi. 10.1093/bioinformatics/btw325
- By:
- Publication type:
- Article
compendiumdb: an R package for retrieval and storage of functional genomics data.
- Published in:
- 2016
- By:
- Publication type:
- Question & Answer
PAA: an R/bioconductor package for biomarker discovery with protein microarrays.
- Published in:
- Bioinformatics, 2016, v. 32, n. 10, p. 1577, doi. 10.1093/bioinformatics/btw037
- By:
- Publication type:
- Article
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
- Published in:
- Bioinformatics, 2016, v. 32, n. 8, p. 1211, doi. 10.1093/bioinformatics/btv735
- By:
- Publication type:
- Article
traseR: an R package for performing trait-associated SNP enrichment analysis in genomic intervals.
- Published in:
- Bioinformatics, 2016, v. 32, n. 8, p. 1214, doi. 10.1093/bioinformatics/btv741
- By:
- Publication type:
- Article
PaxtoolsR: pathway analysis in R using Pathway Commons.
- Published in:
- Bioinformatics, 2016, v. 32, n. 8, p. 1262, doi. 10.1093/bioinformatics/btv733
- By:
- Publication type:
- Article
Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer.
- Published in:
- Bioinformatics, 2016, v. 32, n. 7, p. 1097, doi. 10.1093/bioinformatics/btv693
- By:
- Publication type:
- Article
iPQF: a new peptide-to-protein summarization method using peptide spectra characteristics to improve protein quantification.
- Published in:
- Bioinformatics, 2016, v. 32, n. 7, p. 1040, doi. 10.1093/bioinformatics/btv675
- By:
- Publication type:
- Article
TiMEx: a waiting time model for mutually exclusive cancer alterations.
- Published in:
- Bioinformatics, 2016, v. 32, n. 7, p. 968, doi. 10.1093/bioinformatics/btv400
- By:
- Publication type:
- Article
regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests.
- Published in:
- Bioinformatics, 2016, v. 32, n. 2, p. 289, doi. 10.1093/bioinformatics/btv562
- By:
- Publication type:
- Article
msa: an R package for multiple sequence alignment.
- Published in:
- Bioinformatics, 2015, v. 31, n. 24, p. 3997, doi. 10.1093/bioinformatics/btv494
- By:
- Publication type:
- Article
SomaticSignatures: inferring mutational signatures from single-nucleotide variants.
- Published in:
- Bioinformatics, 2015, v. 31, n. 22, p. 3673, doi. 10.1093/bioinformatics/btv408
- By:
- Publication type:
- Article
Sincell: an R/Bioconductor package for statistical assessment of cell-state hierarchies from single-cell RNA-seq.
- Published in:
- Bioinformatics, 2015, v. 31, n. 20, p. 3380, doi. 10.1093/bioinformatics/btv368
- By:
- Publication type:
- Article