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Glyphosate-Induced Phosphonatase Operons in Soil Bacteria of the Genus Achromobacter.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 12, p. 6409, doi. 10.3390/ijms25126409
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RESCUE: a validated Nanopore pipeline to classify bacteria through long-read, 16S-ITS-23S rRNA sequencing.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1201064
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A computational approach for the identification of distant homologs of bacterial riboswitches based on inverse RNA folding.
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- Briefings in Bioinformatics, 2023, v. 24, n. 3, p. 1, doi. 10.1093/bib/bbad110
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The Operon as a Conundrum of Gene Dynamics and Biochemical Constraints: What We Have Learned from Histidine Biosynthesis.
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- Genes, 2023, v. 14, n. 4, p. 949, doi. 10.3390/genes14040949
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Special Issue "Multidrug-Resistant Bacteria in the Environment, Their Resistance and Transfer Mechanisms".
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- Microorganisms, 2023, v. 11, n. 4, p. 981, doi. 10.3390/microorganisms11040981
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Keeping it cool.
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- eLife, 2023, p. 1, doi. 10.7554/eLife.86885
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Characterization of radiation-resistance mechanism in Spirosoma montaniterrae DY10<sup>T</sup> in terms of transcriptional regulatory system.
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- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-31509-8
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The structure of Vibrio cholerae FeoC reveals conservation of the helix-turn-helix motif but not the cluster-binding domain.
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- Journal of Biological Inorganic Chemistry (JBIC), 2022, v. 27, n. 4/5, p. 485, doi. 10.1007/s00775-022-01945-4
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Modeling endonuclease colicin-like bacteriocin operons as 'genetic arms' in plasmid-genome conflicts.
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- Molecular Genetics & Genomics, 2022, v. 297, n. 3, p. 763, doi. 10.1007/s00438-022-01884-4
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Conjugation Operons in Gram-Positive Bacteria with and without Antitermination Systems.
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- Microorganisms, 2022, v. 10, n. 3, p. 587, doi. 10.3390/microorganisms10030587
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Predicting Selective RNA Processing and Stabilization Operons in Clostridium spp.
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- Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.673349
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Co-Regulated Genes and Gene Clusters.
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- Genes, 2021, v. 13, n. 6, p. 907, doi. 10.3390/genes12060907
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Position preference of essential genes in prokaryotic operons.
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- PLoS ONE, 2021, v. 16, n. 4, p. 1, doi. 10.1371/journal.pone.0250380
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Characterization of Regulatory Elements of L11 and L1 Operons in Thermophilic Bacteria and Archaea.
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- Biochemistry (00062979), 2021, v. 86, n. 4, p. 397, doi. 10.1134/S0006297921040027
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Prediction and analysis of metagenomic operons via MetaRon: a pipeline for prediction of Metagenome and whole-genome opeRons.
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- BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-020-07357-5
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The Variety in the Common Theme of Translation Inhibition by Type II Toxin–Antitoxin Systems.
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- Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00262
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Species-level evaluation of the human respiratory microbiome.
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- GigaScience, 2020, v. 9, n. 4, p. N.PAG, doi. 10.1093/gigascience/giaa038
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Phenotype, Virulence and Immunogenicity of Edwardsiella piscicida Cyclic AMP Receptor Protein (Crp) Mutants in Catfish Host.
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- Microorganisms, 2020, v. 8, n. 4, p. 517, doi. 10.3390/microorganisms8040517
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A systematic pipeline for classifying bacterial operons reveals the evolutionary landscape of biofilm machineries.
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- PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007721
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Discovery and characterization of a Gram-positive Pel polysaccharide biosynthetic gene cluster.
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- PLoS Pathogens, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.ppat.1008281
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Characterization of a Linezolid- and Vancomycin-Resistant Streptococcus suis Isolate That Harbors optrA and vanG Operons.
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- Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.02026
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Tracing the ancestry of operons in bacteria.
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- Bioinformatics, 2019, v. 35, n. 17, p. 2998, doi. 10.1093/bioinformatics/btz053
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Multifaceted Stoichiometry Control of Bacterial Operons Revealed by Deep Proteome Quantification.
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- Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00473
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Mechanisms of RsaL mediated tolerance to ciprofloxacin and carbenicillin in Pseudomonas aeruginosa.
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- Current Genetics, 2019, v. 65, n. 1, p. 213, doi. 10.1007/s00294-018-0863-3
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Assembly of a complete genome sequence for Gemmata obscuriglobus reveals a novel prokaryotic rRNA operon gene architecture.
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- Antonie van Leeuwenhoek, 2018, v. 111, n. 11, p. 2095, doi. 10.1007/s10482-018-1102-0
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Aminoglycoside-inducible expression of the mexAB-oprM multidrug efflux operon in Pseudomonas aeruginosa: Involvement of the envelope stress-responsive AmgRS two-component system.
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- PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0205036
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Origins Left, Right, and Centre: Increasing the Number of Initiation Sites in the Escherichia coli Chromosome.
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- Genes, 2018, v. 9, n. 8, p. 376, doi. 10.3390/genes9080376
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The imbroglio of the physiological Cra effector clarified at last.
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- Molecular Microbiology, 2018, v. 109, n. 3, p. 273, doi. 10.1111/mmi.14080
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The SbcC and SbcD homologs of the cyanobacterium Anabaena sp. strain PCC7120 (Alr3988 and All4463) contribute independently to DNA repair.
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- Functional & Integrative Genomics, 2018, v. 18, n. 4, p. 357, doi. 10.1007/s10142-018-0599-7
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BLAST-XYPlot Viewer: A Tool for Performing BLAST in Whole-Genome Sequenced Bacteria/Archaea and Visualize Whole Results Simultaneously.
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- G3: Genes | Genomes | Genetics, 2018, v. 8, n. 7, p. 2167, doi. 10.1534/g3.118.200220
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The <italic>Xylella fastidosa</italic> RTX operons: evidence for the evolution of protein mosaics through novel genetic exchanges.
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- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4731-9
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Extensive reshaping of bacterial operons by programmed mRNA decay.
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- PLoS Genetics, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pgen.1007354
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- Article
Tetracycline alters gene expression in <italic>Salmonella</italic> strains that harbor the Tn<italic>10</italic> transposon.
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- Environmental Microbiology Reports, 2018, v. 10, n. 2, p. 202, doi. 10.1111/1758-2229.12621
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Phenotype microarray analysis of the AdeRS two-component system in Acinetobacter baumannii.
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- European Journal of Clinical Microbiology & Infectious Diseases, 2017, v. 36, n. 12, p. 2343, doi. 10.1007/s10096-017-3066-9
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A novel ArsR regulator of a bacterial arsenical resistance (ars) operon is selective for methylarsenite (MAs(III)) over As(III). This surface model of the CadC aporepressor structure shows the location of metal(loid) binding sites. The S3 As(III)-binding site of AfArsR (purple) and the S2 MAs(III)-binding site of SpArsR (blue) differ by a single cysteine residue. For details see the article by Chen et al. on pp. 469-478 of this issue.
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- Molecular Microbiology, 2017, v. 106, n. 3, p. i, doi. 10.1111/mmi.13520
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- Article
The CodY-dependent clhAB2 operon is involved in cell shape, chaining and autolysis in Bacillus cereus ATCC 14579.
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- PLoS ONE, 2017, v. 12, n. 10, p. 1, doi. 10.1371/journal.pone.0184975
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FleN and FleQ play a synergistic role in regulating lapA and bcs operons in Pseudomonas putida KT2440.
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- Environmental Microbiology Reports, 2017, v. 9, n. 5, p. 571, doi. 10.1111/1758-2229.12547
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Bistability and Asynchrony in a Boolean Model of the l-arabinose Operon in Escherichia coli.
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- Bulletin of Mathematical Biology, 2017, v. 79, n. 8, p. 1778, doi. 10.1007/s11538-017-0306-1
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Fis R activates σ<sup>54</sup>-dependent transcription of sulfide-oxidizing genes in C upriavidus pinatubonensis JMP134.
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- Molecular Microbiology, 2017, v. 105, n. 3, p. 373, doi. 10.1111/mmi.13725
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Structural Insight into the Gene Expression Profiling of the hcn Operon in Pseudomonas aeruginosa.
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- Applied Biochemistry & Biotechnology, 2017, v. 182, n. 3, p. 1144, doi. 10.1007/s12010-016-2388-x
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Characterization of the regulation of a plant polysaccharide utilization operon and its role in biofilm formation in Bacillus subtilis.
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- PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0179761
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Hic A toxin of E scherichia coli derepresses hic AB transcription to selectively produce Hic B antitoxin.
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- Molecular Microbiology, 2017, v. 104, n. 5, p. 781, doi. 10.1111/mmi.13662
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Regulation of nrf operon expression in pathogenic enteric bacteria: sequence divergence reveals new regulatory complexity.
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- Molecular Microbiology, 2017, v. 104, n. 4, p. 580, doi. 10.1111/mmi.13647
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Regulation of Inducible Potassium Transporter KdpFABC by the KdpD/KdpE Two-Component System in Mycobacterium smegmatis.
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- Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00570
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The malS-5′UTR regulates hisG, a key gene in the histidine biosynthetic pathway in Salmonella enterica serovar Typhi.
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- Canadian Journal of Microbiology, 2017, v. 63, n. 4, p. 287, doi. 10.1139/cjm-2016-0490
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The flagellar master operon flh DC is a pleiotropic regulator involved in motility and virulence of the fish pathogen Yersinia ruckeri.
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- Journal of Applied Microbiology, 2017, v. 122, n. 3, p. 578, doi. 10.1111/jam.13374
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Common Distribution of gad Operon in Lactobacillus brevis and its GadA Contributes to Efficient GABA Synthesis toward Cytosolic Near-Neutral pH.
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- Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00206
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Role of Autoregulation and Relative Synthesis of Operon Partners in Alternative Sigma Factor Networks.
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- PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005267
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The Staphylococcus aureus group II biotin protein ligase BirA is an effective regulator of biotin operon transcription and requires the DNA binding domain for full enzymatic activity.
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- Molecular Microbiology, 2016, v. 102, n. 3, p. 417, doi. 10.1111/mmi.13470
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Expression and regulation of the ery operon of Brucella melitensis in human trophoblast cells.
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- Experimental & Therapeutic Medicine, 2016, v. 12, n. 4, p. 2723, doi. 10.3892/etm.2016.3688
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- Article