Works matching DE "BACTERIAL loci"

Results: 91

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species.

Published in:

Bioinformatics, 2015, v. 31, n. 5, p. 647, doi. 10.1093/bioinformatics/btu716

By:

Terrapon, Nicolas;
Lombard, Vincent;
Gilbert, Harry J.;
Henrissat, Bernard

Publication type:

Article

Quantitative Trait Loci Mapping for Bacterial Wilt Resistance and Plant Height in Tomatoes.

Published in:

Plants (2223-7747), 2024, v. 13, n. 6, p. 876, doi. 10.3390/plants13060876

By:

Siddique, Muhammad Irfan;
Silverman, Emily;
Louws, Frank;
Panthee, Dilip R.

Publication type:

Article

Characterization and QTL Mapping of a Major Field Resistance Locus for Bacterial Blight in Rice.

Published in:

Plants (2223-7747), 2022, v. 11, n. 11, p. 1404, doi. 10.3390/plants11111404

By:

Park, Jae-Ryoung;
Lee, Chang-Min;
Ji, Hyeonso;
Baek, Man-Kee;
Seo, Jeonghwan;
Jeong, O-Young;
Park, Hyun-Su

Publication type:

Article

Genome-Wide Association Analysis Identifies Resistance Loci for Bacterial Leaf Streak Resistance in Rice (Oryza sativa L.).

Published in:

Plants (2223-7747), 2020, v. 9, n. 12, p. 1673, doi. 10.3390/plants9121673

By:

Sattayachiti, Wannapa;
Wanchana, Samart;
Arikit, Siwaret;
Nubankoh, Phakchana;
Patarapuwadol, Sujin;
Vanavichit, Apichart;
Darwell, Clive T.;
Toojinda, Theerayut

Publication type:

Article

Relapsed anaplastic lymphoma kinase-positive large B-cell lymphoma expressed cluster of differentiation 4 and cytokeratin: An initially misdiagnosed case corrected by immunoglobulin κ locus gene rearrangement detection.

Published in:

Oncology Letters, 2017, v. 14, n. 1, p. 787, doi. 10.3892/ol.2017.6180

By:

YUNFEI SHI;
XIANGHONG LI;
LIXIN ZHOU;
QIN FENG;
PING WANG;
YANHUA BAI;
YUMEI LAI;
YUQIN SONG;
CHEN ZHANG;
WEIPING LIU

Publication type:

Article

QTL-Seq Analysis for Identification of Resistance Loci to Bacterial Canker in Tomato.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2021.809959

By:

Abebe, Alebel Mekuriaw;
Oh, Chang-Sik;
Kim, Hyoung Tae;
Choi, Giwon;
Seo, Eunyoung;
Yeam, Inhwa;
Lee, Je Min

Publication type:

Article

β-Carboxysome bioinformatics: identification and evolution of new bacterial microcompartment protein gene classes and core locus constraints.

Published in:

Journal of Experimental Botany, 2017, v. 68, n. 14, p. 3841, doi. 10.1093/jxb/erx115

By:

Sommer, Manuel;
Fei Cai;
Melnicki, Matthew;
Kerfeld, Cheryl A.

Publication type:

Article

Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project.

Published in:

Rice (19398425), 2021, v. 13, n. 1, p. 1, doi. 10.1186/s12284-021-00462-3

By:

Lu, Jialing;
Wang, Chunchao;
Zeng, Dan;
Li, Jianmin;
Shi, Xiaorong;
Shi, Yingyao;
Zhou, Yongli

Publication type:

Article

Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project.

Published in:

Rice (19398425), 2021, v. 14, n. 1, p. 1, doi. 10.1186/s12284-021-00462-3

By:

Lu, Jialing;
Wang, Chunchao;
Zeng, Dan;
Li, Jianmin;
Shi, Xiaorong;
Shi, Yingyao;
Zhou, Yongli

Publication type:

Article

Molecular typing of Legionella pneumophila isolates from environmental water samples and clinical samples using a five-gene sequence typing and standard Sequence-Based Typing.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0190986

By:

Zhan, Xiao-Yong;
Zhu, Qing-Yi

Publication type:

Article

Development and comparison of a generic multiple-locus variable-number tandem repeat analysis with pulsed-field gel electrophoresis for typing of Salmonella enterica subsp. enterica.

Published in:

Journal of Applied Microbiology, 2015, v. 119, n. 6, p. 1707, doi. 10.1111/jam.12965

By:

Kjeldsen, M.K.;
Torpdahl, M.;
Pedersen, K.;
Nielsen, E.M.

Publication type:

Article

Lambda Red recombinase-mediated integration of the high molecular weight DNA into the Escherichia coli chromosome.

Published in:

Microbial Cell Factories, 2016, v. 15, p. 1, doi. 10.1186/s12934-016-0571-y

By:

Juhas, Mario;
Ajioka, James W.

Publication type:

Article

Wide dissemination of linezolid-resistant Staphylococcus epidermidis in Greece is associated with a linezolid-dependent ST22 clone.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2015, v. 70, n. 6, p. 1625, doi. 10.1093/jac/dkv028

By:

Karavasilis, Vasilios;
Zarkotou, Olympia;
Panopoulou, Maria;
Kachrimanidou, Melina;
Themeli-Digalaki, Katerina;
Stylianakis, Antonios;
Gennimata, Vassiliki;
Ntokou, Eleni;
Stathopoulos, Constantinos;
Tsakris, Athanasios;
Pournaras, Spyros

Publication type:

Article

Genetic environment and location of the lnu(A) and lnu(B) genes in methicillin-resistant Staphylococcus aureus and other staphylococci of animal and human origin.

Published in:

Journal of Antimicrobial Chemotherapy (JAC), 2012, v. 67, n. 12, p. 2804, doi. 10.1093/jac/dks320

By:

Lozano, Carmen;
Aspiroz, Carmen;
Sáenz, Yolanda;
Ruiz-García, Montserrat;
Royo-García, Gloria;
Gómez-Sanz, Elena;
Ruiz-Larrea, Fernanda;
Zarazaga, Myriam;
Torres, Carmen

Publication type:

Article

Subdiffusion of loci and cytoplasmic particles are different in compressed Escherichia coli cells.

Published in:

Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0185-5

By:

Yu, Shi;
Sheats, Julian;
Cicuta, Pietro;
Sclavi, Bianca;
Cosentino Lagomarsino, Marco;
Dorfman, Kevin D.

Publication type:

Article

Whole genome resequencing and complementation tests reveal candidate loci contributing to bacterial wilt (Ralstonia sp.) resistance in tomato.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-12326-x

By:

Barchenger, Derek W.;
Hsu, Yu-ming;
Ou, Jheng-yang;
Lin, Ya-ping;
Lin, Yao-cheng;
Balendres, Mark Angelo O.;
Hsu, Yun-che;
Schafleitner, Roland;
Hanson, Peter

Publication type:

Article

A genome-wide association study in a large community-based cohort identifies multiple loci associated with susceptibility to bacterial and viral infections.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-05838-z

By:

Tängdén, Thomas;
Gustafsson, Stefan;
Rao, Abhiram S.;
Ingelsson, Erik

Publication type:

Article

Characterization of rifampicin-resistant Mycobacterium tuberculosis in Khyber Pakhtunkhwa, Pakistan.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-93501-4

By:

Khan, Anwar Sheed;
Phelan, Jody E.;
Khan, Muhammad Tahir;
Ali, Sajid;
Qasim, Muhammad;
Napier, Gary;
Campino, Susana;
Ahmad, Sajjad;
Cabral-Marques, Otavio;
Zhang, Shulin;
Rahman, Hazir;
Wei, Dong-Qing;
Clark, Taane G.;
Khan, Taj Ali

Publication type:

Article

sRNA Antitoxins: More than One Way to Repress a Toxin.

Published in:

Toxins, 2014, v. 6, n. 8, p. 2310, doi. 10.3390/toxins6082310

By:

Jia Wen;
Fozo, Elizabeth M.

Publication type:

Article

Correction: A Role for Tn6029 in the Evolution of the Complex Antibiotic Resistance Gene Loci in Genomic Island 3 in Enteroaggregative Hemorrhagic Escherichia coli O104:H4.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0126197

By:

null, null

Publication type:

Article

Genetic Analysis and Prevalence Studies of the brp Exopolysaccharide Locus of Vibrio vulnificus.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0100890

By:

Garrison-Schilling, Katherine L.;
Kaluskar, Zelam M.;
Lambert, Bliss;
Pettis, Gregg S.

Publication type:

Article

Isolation and Characterization of Numerous Novel Phages Targeting Diverse Strains of the Ubiquitous and Opportunistic Pathogen Achromobacter xylosoxidans.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0086935

By:

Wittmann, Johannes;
Dreiseikelmann, Brigitte;
Rohde, Christine;
Rohde, Manfred;
Sikorski, Johannes

Publication type:

Article

Allele Intersection Analysis: A Novel Tool for Multi Locus Sequence Assignment in Multiply Infected Hosts.

Published in:

PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0022198

By:

Arthofer, Wolfgang;
Riegler, Markus;
Schuler, Hannes;
Schneider, Daniela;
Moder, Karl;
Miller, Wolfgang J.;
Stauffer, Christian

Publication type:

Article

Prevalence of methicillin-resistant Staphylococcus aureus colonization in HIV-infected patients in Barcelona, Spain: a cross-sectional study.

Published in:

BMC Infectious Diseases, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12879-015-0991-z

By:

Imaz, Arkaitz;
Camoez, Mariana;
Di Yacovo, Silvana;
Gasch, Oriol;
Angeles Dominguez, M.;
Vila, Antonia;
Maso-Serra, Margarita;
Pujol, Miquel;
Podzamczer, Daniel

Publication type:

Article

High multiple carriage and emergence of Streptococcus pneumoniae vaccine serotype variants in Malawian children.

Published in:

BMC Infectious Diseases, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12879-015-0980-2

By:

Kamng'ona, Arox W.;
Hinds, Jason;
Bar-Zeev, Naor;
Gould, Katherine A.;
Chaguza, Chrispin;
Msefula, Chisomo;
Cornick, Jennifer E.;
Kulohoma, Benard W.;
Gray, Katherine;
Bentley, Stephen D.;
French, Neil;
Heyderman, Robert S.;
Everett, Dean B.

Publication type:

Article

Multiple-locus variable-number tandem-repeat analysis (MLVA) genotyping of human Brucella isolates in Malaysia.

Published in:

BMC Infectious Diseases, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12879-015-0958-0

By:

Bee Yong Tay;
Ahmad, Norazah;
Hashim, Rohaidah;
Zahidi, Jama'ayah Mohamed;
Kwai Lin Thong;
Xiu Pei Koh;
Noor, Azura Mohd

Publication type:

Article

Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147T.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-5

By:

Persicke, Marcus;
Albersmeier, Andreas;
Bednarz, Hanna;
Niehaus, Karsten;
Kalinowski, Jörn;
Rückert, Christian

Publication type:

Article

Variations of Indole Metabolites and NRPS-PKS Loci in Two Different Virulent Strains of Xenorhabdus hominickii.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.583594

By:

Mollah, Md. Mahi Imam;
Roy, Miltan Chandra;
Choi, Doo-Yeol;
Hasan, Md. Ariful;
Al Baki, Md. Abdullah;
Yeom, Hyun-Suk;
Kim, Yonggyun

Publication type:

Article

Just how Lamarckian is CRISPR-Cas immunity: the continuum of evolvability mechanisms.

Published in:

Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0111-z

By:

Koonin, Eugene V.;
Wolf, Yuri I.

Publication type:

Article

QTL mapping and correlation analysis for 1000-grain weight and percentage of grains with chalkiness in rice.

Published in:

Journal of Genetics, 2013, v. 92, n. 2, p. 281, doi. 10.1007/s12041-013-0267-6

By:

BIAN, JIAN-MIN;
SHI, HUAN;
LI, CUI-JUAN;
ZHU, CHANG-LAN;
YU, QIU-YING;
PENG, XIAO-SONG;
FU, JUN-RU;
HE, XIAO-PENG;
CHEN, XIAO-RONG;
HU, LI-FANG;
OUYANG, LIN-JUAN;
HE, HAO-HUA

Publication type:

Article

CDI Systems Are Stably Maintained by a Cell-Contact Mediated Surveillance Mechanism.

Published in:

PLoS Genetics, 2016, v. 12, n. 6, p. 1, doi. 10.1371/journal.pgen.1006145

By:

Ruhe, Zachary C.;
Nguyen, Josephine Y.;
Chen, Annette J.;
Leung, Nicole Y.;
Hayes, Christopher S.;
Low, David A.

Publication type:

Article

Three-dimensional localization and tracking of chromosomal loci throughout the Escherichia coli cell cycle.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07155-9

By:

Karempudi, Praneeth;
Gras, Konrad;
Amselem, Elias;
Zikrin, Spartak;
Schirman, Dvir;
Elf, Johan

Publication type:

Article

CRISPR-CAS9 : A PROMISING GENOME EDITING TOOL.

Published in:

Journal of Experimental Zoology India, 2020, v. 23, n. 1, p. 1

By:

K. C., Nikhil;
Pruthviraj, D. R.;
Aderao, Ganesh N.;
Harish Kumar, K. P.

Publication type:

Article

Residual Variation Intolerance Score Detects Loci Under Selection in Neuroinvasive Listeria monocytogenes.

Published in:

Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02702

By:

Ferwerda, Bart;
Maury, Mylène M.;
Brouwer, Mathijs C.;
Hafner, Lukas;
van der Ende, Arie;
Bentley, Stephen;
Lecuit, Marc;
van de Beek, Diederik

Publication type:

Article

CRISPR-Cas Systems in the Fight Against Antimicrobial Resistance: Current Status, Potentials, and Future Directions.

Published in:

Infection & Drug Resistance, 2024, v. 17, p. 5229, doi. 10.2147/IDR.S494327

By:

Ahmed, Mohamed Mustaf;
Kayode, Hassan Hakeem;
Okesanya, Olalekan John;
Ukoaka, Bonaventure Michael;
Eshun, Gilbert;
Mourid, Marina Ramzy;
Adigun, Olaniyi Abideen;
Ogaya, Jerico Bautista;
Mohamed, Zeinab Omar;
III, Don Eliseo Lucero-Prisno

Publication type:

Article

Diversity and microevolution of CRISPR loci in Helicobacter cinaedi.

Published in:

PLoS ONE, 2017, v. 12, n. 10, p. 1, doi. 10.1371/journal.pone.0186241

By:

Tomida, Junko;
Morita, Yuji;
Shibayama, Keigo;
Kikuchi, Ken;
Sawa, Tomohiro;
Akaike, Takaaki;
Kawamura, Yoshiaki

Publication type:

Article

Phylogenetic analysis of Mycobacterium massiliense strains having recombinant rpoB gene laterally transferred from Mycobacterium abscessus.

Published in:

PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0179237

By:

Kim, Byoung-Jun;
Kim, Ga-Na;
Kim, Bo-Ram;
Shim, Tae-Sun;
Kook, Yoon-Hoh;
Kim, Bum-Joon

Publication type:

Article

Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure.

Published in:

PLoS ONE, 2017, v. 12, n. 4, p. 1, doi. 10.1371/journal.pone.0176191

By:

Peeters, Charlotte;
Cooper, Vaughn S.;
Hatcher, Philip J.;
Verheyde, Bart;
Carlier, Aurélien;
Vandamme, Peter

Publication type:

Article

Population structure and molecular genetic characterization of 5-flucytosine-susceptible and -resistant clinical Candida dubliniensis isolates from Kuwait.

Published in:

PLoS ONE, 2017, v. 12, n. 4, p. 1, doi. 10.1371/journal.pone.0175269

By:

Asadzadeh, Mohammad;
Ahmad, Suhail;
Al-Sweih, Noura;
Khan, Ziauddin

Publication type:

Article

Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio.

Published in:

PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0173517

By:

Ahn, Anne-Catherine;
Meier-Kolthoff, Jan P.;
Overmars, Lex;
Richter, Michael;
Woyke, Tanja;
Sorokin, Dimitry Y.;
Muyzer, Gerard

Publication type:

Article

Molecular analysis of resistance gene locus to bacterial canker and wilting disease in tomato mutants.

Published in:

Mediterranean Agricultural Sciences, 2022, v. 35, n. 3, p. 129, doi. 10.29136/mediterranean.1101666

By:

KARABULUT, Deniz;
CALIS, Ozer

Publication type:

Article

Genome-wide association study of Stayability and Heifer Pregnancy in Red Angus cattle.

Published in:

Journal of Animal Science, 2018, v. 96, n. 3, p. 846, doi. 10.1093/jas/sky041

By:

Speidel, S E;
Buckley, B A;
Boldt, R J;
Enns, R M;
Lee, J;
Spangler, M L;
Thomas, M G

Publication type:

Article

Fast and simple epidemiological typing of Pseudomonas aeruginosa using the double-locus sequence typing (DLST) method.

Published in:

European Journal of Clinical Microbiology & Infectious Diseases, 2014, v. 33, n. 6, p. 927, doi. 10.1007/s10096-013-2028-0

By:

Basset, P.;
Blanc, D.

Publication type:

Article

Do black truffles avoid sexual harassment by linking mating type and vegetative incompatibility?

Published in:

New Phytologist, 2013, v. 199, n. 1, p. 10, doi. 10.1111/nph.12329

By:

Selosse, Marc‐André;
Taschen, Elisa;
Giraud, Tatiana

Publication type:

Article

Selective and non‐selective bottlenecks as drivers of the evolution of hypermutable bacterial loci.

Published in:

Molecular Microbiology, 2020, v. 113, n. 3, p. 672, doi. 10.1111/mmi.14453

By:

De Ste Croix, Megan;
Holmes, Jonathan;
Wanford, Joseph J.;
Moxon, E. Richard;
Oggioni, Marco R.;
Bayliss, Christopher D.

Publication type:

Article

The roles of AtxA orthologs in virulence of anthrax-like B acillus cereus G9241.

Published in:

Molecular Microbiology, 2016, v. 102, n. 4, p. 545, doi. 10.1111/mmi.13478

By:

Scarff, Jennifer M.;
Raynor, Malik J.;
Seldina, Yuliya I.;
Ventura, Christy L.;
Koehler, Theresa M.;
O'Brien, Alison D.

Publication type:

Article

Functional characterization of a gene locus from an uncultured gut Bacteroides conferring xylo-oligosaccharides utilization to Escherichia coli.

Published in:

Molecular Microbiology, 2016, v. 102, n. 4, p. 579, doi. 10.1111/mmi.13480

By:

Tauzin, Alexandra S.;
Laville, Elisabeth;
Xiao, Yao;
Nouaille, Sébastien;
Le Bourgeois, Pascal;
Heux, Stéphanie;
Portais, Jean‐Charles;
Monsan, Pierre;
Martens, Eric C.;
Potocki‐Veronese, Gabrielle;
Bordes, Florence

Publication type:

Article

Genotyping and investigating capsular polysaccharide synthesis gene loci of non-serotypeable Streptococcus suis isolated from diseased pigs in Canada.

Published in:

Veterinary Research, 2017, v. 48, p. 1, doi. 10.1186/s13567-017-0417-6

By:

Han Zheng;
Xiaotong Qiu;
Roy, David;
Segura, Mariela;
Pengchen Du;
Jianguo Xu;
Gottschalk, Marcelo

Publication type:

Article

Multilocus sequence typing of Campylobacter concisus from Danish diarrheic patients.

Published in:

Gut Pathogens, 2016, v. 8, p. 1, doi. 10.1186/s13099-016-0126-0

By:

Nielsen, Hans Linde;
Nielsen, Henrik;
Torpdahl, Mia

Publication type:

Article

Comparative analysis of the Geobacillus hemicellulose utilization locus reveals a highly variable target for improved hemicellulolysis.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-836

By:

De Maayer, Pieter;
Brumm, Phillip J.;
Mead, David A.;
Cowan, Don A.

Publication type:

Article