Works about BACTERIAL genomes

Results: 2906

Prediction of lipase-specific foldase-dependence in bacterial lipase subfamilies I.1 and I.2.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11717-4

By:

Hioki, Takahiro

Publication type:

Article

Comparison of RNA- and DNA-based 16S amplicon sequencing to find the optimal approach for the analysis of the uterine microbiome.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-00969-5

By:

Dyroff, Antonia I.;
López-Valiñas, Álvaro;
Magalhaes, Humberto B.;
Podico, Giorgia;
Canisso, Igor F.;
Almiñana, Carmen;
Bauersachs, Stefan

Publication type:

Article

Often in silico , rarely in vivo : characterizing endemic plant-associated microbes for system-appropriate biofertilizers.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1568162

By:

Hone, Holly;
Li, Tongda;
Kaur, Jatinder;
Wood, Jennifer L.;
Sawbridge, Timothy

Publication type:

Article

Genomic analysis of prophages in 44 clinical strains of Pseudomonas aeruginosa isolated in Saudi Arabia.

Published in:

Frontiers in Cellular & Infection Microbiology, 2025, p. 1, doi. 10.3389/fcimb.2025.1563781

By:

Alsaadi, Ahlam;
Imam, Mohammed;
Alghamdi, Abdulrahman A.;
Aljedani, Safia S.;
Alsari, Amal;
Aljami, Haya;
Bosaeed, Mohammad

Publication type:

Article

A curated bacterial and archaeal 16S rRNA Gene Oral Sequences dataset.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05050-4

By:

Vázquez-González, Lara;
Regueira-Iglesias, Alba;
Balsa-Castro, Carlos;
Tomás, Inmaculada;
Carreira, María J.

Publication type:

Article

Multi-proteins similarity-based sampling to select representative genomes from large databases.

Published in:

BMC Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12859-025-06095-3

By:

Coudert, Rémi-Vinh;
Charrier, Jean-Philippe;
Jauffrit, Frédéric;
Flandrois, Jean-Pierre;
Brochier-Armanet, Céline

Publication type:

Article

Metagenomic Analysis of Caseum of Tuberculosis Foci.

Published in:

Bulletin of Experimental Biology & Medicine, 2025, v. 178, n. 5, p. 610, doi. 10.1007/s10517-025-06384-0

By:

Orlova, E. A.;
Sinkov, V. V.;
Ogarkov, O. B.;
Suzdalnitsky, A. E.;
Kondratov, I. G.;
Zhdanova, S. N.;
Rychkova, L. V.;
Kolesnikova, L. I.

Publication type:

Article

Epigenetic background of lineage-specific gene expression landscapes of four Staphylococcus aureus hospital isolates.

Published in:

PLoS ONE, 2025, v. 20, n. 5, p. 1, doi. 10.1371/journal.pone.0322006

By:

Korotetskiy, Ilya S.;
Shilov, Sergey V.;
Kuznetsova, Tatyana V.;
Zubenko, Natalya;
Ivanova, Lyudmila;
Reva, Oleg N.

Publication type:

Article

RIBOSS detects novel translational events by combining long- and short-read transcriptome and translatome profiling.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf164

By:

Lim, Chun Shen;
Gibbon, Alexandra K;
Nguyen, Anh Thu Tran;
Chieng, Gabrielle S W;
Brown, Chris M

Publication type:

Article

Transient Hypermutagenesis Accelerates the Evolution of Legume Endosymbionts following Horizontal Gene Transfer.

Published in:

PLoS Biology, 2014, v. 12, n. 9, p. 1, doi. 10.1371/journal.pbio.1001942

By:

Remigi, Philippe;
Capela, Delphine;
Clerissi, Camille;
Tasse, Léna;
Torchet, Rachel;
Bouchez, Olivier;
Batut, Jacques;
Cruveiller, Stéphane;
Rocha, Eduardo P. C.;
Masson-Boivin, Catherine

Publication type:

Article

Symbiosis Plasmids Bring Their Own Mutagen to the Wedding Party.

Published in:

PLoS Biology, 2014, v. 12, n. 9, p. 1, doi. 10.1371/journal.pbio.1001943

By:

Roberts, Roland G.

Publication type:

Article

Patterns and Mechanisms of Ancestral Histone Protein Inheritance in Budding Yeast.

Published in:

PLoS Biology, 2011, v. 9, n. 6, p. 1, doi. 10.1371/journal.pbio.1001075

By:

Radman-Livaja, Marta;
Verzijlbergen, Kitty F.;
Weiner, Assaf;
van Welsem, Tibor;
Friedman, Nir;
Rando, Oliver J.;
van Leeuwen, Fred

Publication type:

Article

PezT: A Bacterial Suicide Gene.

Published in:

PLoS Biology, 2011, v. 9, n. 3, p. 1, doi. 10.1371/journal.pbio.1001036

By:

Sedwick, Caitlin

Publication type:

Article

Evolving Towards Mutualism.

Published in:

PLoS Biology, 2010, v. 8, n. 1, p. 1, doi. 10.1371/journal.pbio.1000279

By:

Gitig, Diana

Publication type:

Article

Stochasticity in Protein Levels Drives Colinearity of Gene Order in Metabolic Operons of Escherichia coli.

Published in:

PLoS Biology, 2009, v. 7, n. 5, p. 1, doi. 10.1371/journal.pbio.1000115

By:

Kovács, Károly;
Hurst, Laurence D.;
Papp, Balázs

Publication type:

Article

BOPAL 2.0 and a study of tRNA and rRNA gene evolution in Clostridium.

Published in:

Journal of Bioinformatics & Computational Biology, 2021, v. 19, n. 6, p. 1, doi. 10.1142/S0219720021400072

By:

Chua, Meghan;
Tan, Anthony;
Tremblay-Savard, Olivier

Publication type:

Article

Detection of homologous recombination in closely related strains.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 2, p. -1, doi. 10.1142/S0219720016410018

By:

Kalinina, Anastasia S.;
Suvorikova, Alexandra L.;
Spokoiny, Vladimir G.;
Gelfand, Mikhail S.

Publication type:

Article

GI-SVM: A sensitive method for predicting genomic islands based on unannotated sequence of a single genome.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 1, p. -1, doi. 10.1142/S0219720016400035

By:

Lu, Bingxin;
Leong, Hon Wai

Publication type:

Article

ACCURATE DISCRIMINATION OF OUTER MEMBRANE PROTEINS USING SECONDARY STRUCTURE ELEMENT ALIGNMENT AND SUPPORT VECTOR MACHINE.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 1, p. -1, doi. 10.1142/S0219720014500036

By:

NI, QINGSHAN;
ZOU, LINGYUN

Publication type:

Article

A SIMPLE SHORTCUT TO UNSUPERVISED ALIGNMENT-FREE PHYLOGENETIC GENOME GROUPINGS, EVEN FROM UNASSEMBLED SEQUENCING READS.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 6, p. 1, doi. 10.1142/S0219720013430051

By:

MAURER-STROH, SEBASTIAN;
GUNALAN, VITHIAGARAN;
WING-CHEONG WONG;
EISENHABER, FRANK

Publication type:

Article

SHARP: genome-scale identification of gene–protein–reaction associations in cyanobacteria.

Published in:

Photosynthesis Research, 2013, v. 117, n. 1-3, p. 181, doi. 10.1007/s11120-013-9910-6

By:

Krishnakumar, S.;
Durai, Dilip A.;
Wangikar, Pramod P.;
Viswanathan, Ganesh A.

Publication type:

Article

Quantitative analysis of the relationship between induction kinetics of chlorophyll fluorescence and function of genes in the cyanobacterium Synechocystis sp. PCC 6803.

Published in:

Photosynthesis Research, 2009, v. 101, n. 1, p. 47, doi. 10.1007/s11120-009-9462-y

By:

Hiroshi Ozaki;
Kintake Sonoike

Publication type:

Article

Minimal genomes, maximal productivity: comparative genomics of the photosystem and light-harvesting complexes in the marine cyanobacterium, Prochlorococcus.

Published in:

Photosynthesis Research, 2009, v. 101, n. 1, p. 1, doi. 10.1007/s11120-009-9455-x

By:

Claire Ting;
Meghan Ramsey;
Yvette Wang;
Alana Frost;
Esther Jun;
Timothy Durham

Publication type:

Article

Chemical transformation mediated CRISPR/Cas9 genome editing in Escherichia coli.

Published in:

Biotechnology Letters, 2019, v. 41, n. 2, p. 293, doi. 10.1007/s10529-018-02639-1

By:

Sun, Dongchang;
Wang, Lin;
Mao, Xudan;
Fei, Mingyue;
Chen, Yiyang;
Shen, Minjia;
Qiu, Juanping

Publication type:

Article

Cloning, purification and evaluation of the enzymatic properties of a novel arylacetonitrilase from Luminiphilus syltensis NOR5-1B: a potential biocatalyst for the synthesis of mandelic acid and its derivatives.

Published in:

Biotechnology Letters, 2015, v. 37, n. 8, p. 1655, doi. 10.1007/s10529-015-1830-4

By:

Sun, Huihui;
Gao, Wenyuan;
Fan, Haiyang;
Wang, Hualei;
Wei, Dongzhi

Publication type:

Article

Screening of Aspergillus-derived FA D-glucose dehydrogenases from fungal genome database.

Published in:

Biotechnology Letters, 2011, v. 33, n. 11, p. 2255, doi. 10.1007/s10529-011-0694-5

By:

Mori, Kazushige;
Nakajima, Mitsuharu;
Kojima, Katsuhiro;
Murakami, Koudai;
Ferri, Stefano;
Sode, Koji

Publication type:

Article

A two-step fermentation process for efficient production of penta- N-acetyl-chitopentaose in recombinant Escherichia coli.

Published in:

Biotechnology Letters, 2007, v. 29, n. 11, p. 1729, doi. 10.1007/s10529-007-9462-y

By:

Dawei Zhang;
Peng Wang;
Qingsheng Qi

Publication type:

Article

Vibrio sonorensis sp. nov. isolated from a cultured oyster Crassostrea gigas.

Published in:

Antonie van Leeuwenhoek, 2016, v. 109, n. 11, p. 1447, doi. 10.1007/s10482-016-0744-z

By:

González-Castillo, Adrián;
Enciso-Ibarra, Julissa;
Dubert, Javier;
Romalde, Jesús;
Gomez-Gil, Bruno

Publication type:

Article

Reclassification of Halomonas caseinilytica Wu et al. 2008 as a later synonym of Halomonas sinaiensis Romano et al. 2007, and emendation of the species description.

Published in:

Antonie van Leeuwenhoek, 2016, v. 109, n. 10, p. 1345, doi. 10.1007/s10482-016-0733-2

By:

Hwang, Chung;
Lee, Inae;
Yoon, Soo;
Lee, Yung;
Lee, Won;
Lee, Hong

Publication type:

Article

Paenibacillus populi sp. nov., a novel bacterium isolated from the rhizosphere of Populus alba.

Published in:

Antonie van Leeuwenhoek, 2015, v. 108, n. 3, p. 659, doi. 10.1007/s10482-015-0521-4

By:

Han, Tong-Yan;
Tong, Xiao-Mei;
Wang, Yan-Wei;
Wang, Hui-Min;
Chen, Xiao-Rong;
Kong, De-Long;
Guo, Xiang;
Ruan, Zhi-Yong

Publication type:

Article

Frederiksenia canicola gen. nov., sp. nov. isolated from dogs and human dog-bite wounds.

Published in:

Antonie van Leeuwenhoek, 2014, v. 105, n. 4, p. 731, doi. 10.1007/s10482-014-0129-0

By:

Korczak, Bożena;
Bisgaard, Magne;
Christensen, Henrik;
Kuhnert, Peter

Publication type:

Article

Characterization of transcription within sdr region of Staphylococcus aureus.

Published in:

Antonie van Leeuwenhoek, 2011, v. 99, n. 2, p. 409, doi. 10.1007/s10482-010-9476-7

By:

Sitkiewicz, Izabela;
Babiak, Ireneusz;
Hryniewicz, Waleria

Publication type:

Article

Purification of bacterial genomic DNA in less than 20 min using chelex-100 microwave: examples from strains of lactic acid bacteria isolated from soil samples.

Published in:

Antonie van Leeuwenhoek, 2010, v. 98, n. 4, p. 465, doi. 10.1007/s10482-010-9462-0

By:

Reyes-Escogido, Lourdes;
Balam-Chi, Mario;
Rodríguez-Buenfil, Ingrid;
Valdés, Jesús;
Kameyama, Luis;
Martínez-Pérez, Francisco

Publication type:

Article

New mobile genetic elements in Cupriavidus metallidurans CH34, their possible roles and occurrence in other bacteria.

Published in:

Antonie van Leeuwenhoek, 2009, v. 96, n. 2, p. 205, doi. 10.1007/s10482-009-9345-4

By:

Rob Van Houdt;
Natalie Leys;
Max Mergeay

Publication type:

Article

Plasmids captured in C. metallidurans CH34: defining the PromA family of broad-host-range plasmids.

Published in:

Antonie van Leeuwenhoek, 2009, v. 96, n. 2, p. 193

By:

Jaroslaw Król;
Haruo Suzuki;
Brian Foster;
Rob Van Houdt;
Celeste Brown;
Max Mergeay;
Eva Top

Publication type:

Article

The ABC-transporter AtmA is involved in nickel and cobalt resistance of Cupriavidus metallidurans strain CH34.

Published in:

Antonie van Leeuwenhoek, 2009, v. 96, n. 2, p. 183, doi. 10.1007/s10482-008-9303-6

By:

André Mikolay;
Dietrich Nies

Publication type:

Article

An Eco-evolutionary Model on Surviving Lysogeny Through Grounding and Accumulation of Prophages.

Published in:

Microbial Ecology, 2023, v. 86, n. 4, p. 3068, doi. 10.1007/s00248-023-02301-y

By:

Sudhakari, Pavithra Anantharaman;
Ramisetty, Bhaskar Chandra Mohan

Publication type:

Article

Whole-Genome Enrichment Provides Deep Insights into Vibrio cholerae Metagenome from an African River.

Published in:

Microbial Ecology, 2017, v. 73, n. 3, p. 734, doi. 10.1007/s00248-016-0902-x

By:

Vezzulli, L.;
Grande, C.;
Tassistro, G.;
Brettar, I.;
Höfle, M.;
Pereira, R.;
Mushi, D.;
Pallavicini, A.;
Vassallo, P.;
Pruzzo, C.

Publication type:

Article

Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes.

Published in:

Microbial Ecology, 2015, v. 70, n. 3, p. 819, doi. 10.1007/s00248-015-0603-x

By:

Zakharevich, Natalia;
Averina, Olga;
Klimina, Ksenia;
Kudryavtseva, Anna;
Kasianov, Artem;
Makeev, Vsevolod;
Danilenko, Valery

Publication type:

Article

Improved Bacteriophage Genome Data is Necessary for Integrating Viral and Bacterial Ecology.

Published in:

Microbial Ecology, 2014, v. 67, n. 2, p. 242, doi. 10.1007/s00248-013-0325-x

By:

Bibby, Kyle

Publication type:

Article

Bacterial Genomes: Habitat Specificity and Uncharted Organisms.

Published in:

Microbial Ecology, 2012, v. 64, n. 1, p. 1, doi. 10.1007/s00248-012-0017-y

By:

Dini-Andreote, Francisco;
Andreote, Fernando;
Araújo, Welington;
Trevors, Jack;
Elsas, Jan

Publication type:

Article

Comparative Genomics of Bifidobacterium, Lactobacillus and Related Probiotic Genera.

Published in:

Microbial Ecology, 2012, v. 63, n. 3, p. 651, doi. 10.1007/s00248-011-9948-y

By:

Lukjancenko, Oksana;
Ussery, David;
Wassenaar, Trudy

Publication type:

Article

Defining the Pseudomonas Genus: Where Do We Draw the Line with Azotobacter?

Published in:

Microbial Ecology, 2012, v. 63, n. 2, p. 239, doi. 10.1007/s00248-011-9914-8

By:

Özen, Asli;
Ussery, David

Publication type:

Article

Comparison of 61 Sequenced Escherichia coli Genomes.

Published in:

Microbial Ecology, 2010, v. 60, n. 4, p. 708, doi. 10.1007/s00248-010-9717-3

By:

Lukjancenko, Oksana;
Wassenaar, Trudy M.;
Ussery, David W.

Publication type:

Article

Symbiotic Relationships of Legumes and Nodule Bacteria on Barro Colorado Island, Panama: A Review.

Published in:

Microbial Ecology, 2008, v. 55, n. 4, p. 662, doi. 10.1007/s00248-007-9309-z

By:

Parker, Matthew A.

Publication type:

Article

Genomics approach to the analysis of bacterial communities dynamics in Hirschsprung's disease-associated enterocolitis: a pilot study.

Published in:

2010

By:

De Filippo, C.;
Pini-Prato, A.;
Mattioli, G.;
Avanzini, S.;
Rapuzzi, G.;
Cavalieri, D.;
Di Paola, M.;
Stefanini, I.;
Ceccherini, I.;
Mavilio, D.;
Lionetti, P.;
Jasonni, V.

Publication type:

journal article

AUTOREGRESSIVE MODELING OF CODING SEQUENCE LENGTHS IN BACTERIAL GENOME.

Published in:

Fluctuation & Noise Letters, 2010, v. 9, n. 1, p. 47, doi. 10.1142/S021947751000006X

By:

MORARIU, VASILE V.;
BUIMAGA-IARINCA, LUIZA

Publication type:

Article

THE LENGTH OF CODING SEQUENCES IN A BACTERIAL GENOME:: EVIDENCE FOR SHORT-RANGE CORRELATION.

Published in:

Fluctuation & Noise Letters, 2007, v. 7, n. 4, p. L501, doi. 10.1142/S0219477507004173

By:

Zainea, Oana;
Morariu, Vasile V.

Publication type:

Article

Analysis of Gut Microbiota in Patients with Parkinson's Disease.

Published in:

Bulletin of Experimental Biology & Medicine, 2017, v. 162, n. 6, p. 734, doi. 10.1007/s10517-017-3700-7

By:

Petrov, V.;
Saltykova, I.;
Zhukova, I.;
Alifirova, V.;
Zhukova, N.;
Dorofeeva, Yu.;
Tyakht, A.;
Kovarsky, B.;
Alekseev, D.;
Kostryukova, E.;
Mironova, Yu.;
Izhboldina, O.;
Nikitina, M.;
Perevozchikova, T.;
Fait, E.;
Babenko, V.;
Vakhitova, M.;
Govorun, V.;
Sazonov, A.

Publication type:

Article

CRISPR-CAS9 : A PROMISING GENOME EDITING TOOL.

Published in:

Journal of Experimental Zoology India, 2020, v. 23, n. 1, p. 1

By:

K. C., Nikhil;
Pruthviraj, D. R.;
Aderao, Ganesh N.;
Harish Kumar, K. P.

Publication type:

Article