Works matching DE "BACTERIAL genomes"

Results: 2926

Comparative genomics reveals key adaptive mechanisms in pathogen host-niche specialization.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1543610

By:

Zhang, Menglu;
Han, Longxi;
Liao, Caizhi;
Su, Weiheng;
Jiang, Chunlai

Publication type:

Article

Editorial: Bacteriophages, prophages, and their products: regulating bacterial populations.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1628912

By:

Maciejewska, Barbara;
Dorotkiewicz-Jach, Agata;
Drulis-Kawa, Zuzanna;
López-Leal, Gamaliel

Publication type:

Article

Effectidor II: a pan-genomic AI-based algorithm for the prediction of type III secretion system effectors Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 5, p. 1, doi. 10.1093/bioinformatics/btaf272

By:

Wagner, Naama;
Baumer, Ella;
Lyubman, Iris;
Shimony, Yair;
Bracha, Noam;
Martins, Leonor;
Potnis, Neha;
Chang, Jeff H;
Teper, Doron;
Koebnik, Ralf;
Pupko, Tal

Publication type:

Article

Pitfalls of bacterial pan-genome analysis approaches: a case study of Mycobacterium tuberculosis and two less clonal bacterial species Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 5, p. 1, doi. 10.1093/bioinformatics/btaf219

By:

Marin, Maximillian G;
Quinones-Olvera, Natalia;
Wippel, Christoph;
Behruznia, Mahboobeh;
Jeffrey, Brendan M;
Harris, Michael;
Mann, Brendon C;
Rosenthal, Alex;
Jacobson, Karen R;
Warren, Robin M;
Li, Heng;
Meehan, Conor J;
Farhat, Maha R

Publication type:

Article

BacTFid—A Simple, Efficient Bacterial Transcription Factor Identifier and Classifier.

Published in:

Microbiology (00262617), 2025, v. 94, n. 3, p. 456, doi. 10.1134/S0026261724609679

By:

Vychyk, P.;
Digris, A.;
Duvalov, E.;
Skakun, V.;
Nikolaichik, Y.

Publication type:

Article

Analyzing and Interpreting Bacterial Omics Data for Antibiotic and Vaccine Development.

Published in:

IAENG International Journal of Computer Science, 2025, v. 52, n. 6, p. 1727

By:

Ali, Mohsin;
Choudhary, Jitendra

Publication type:

Article

Genome-to-genome analysis reveals associations between human and mycobacterial genetic variation in tuberculosis patients from Tanzania.

Published in:

BMC Medical Genomics, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s12920-025-02164-x

By:

Xu, Zhi Ming;
Zwyer, Michaela;
Hiza, Hellen;
Schmidiger, Sarah;
Sasamalo, Mohamed;
Reinhard, Miriam;
Doetsch, Anna;
Borrell, Sonia;
Naret, Olivier;
Rüeger, Sina;
Lawless, Dylan;
Tang, Simon;
Isihaka, Faima;
Temba, Hosiana;
Maroa, Thomas;
Naftari, Rastard;
Beisel, Christian;
Hella, Jerry;
Reither, Klaus;
Brites, Daniela

Publication type:

Article

First Report of Streptococcus agalactiae Meningitis in a Non-Pregnant Adult in Italy.

Published in:

Microorganisms, 2025, v. 13, n. 5, p. 978, doi. 10.3390/microorganisms13050978

By:

Borriello, Giorgia;
Fusco, Giovanna;
Greco, Francesca;
Mauro, Maria Vittoria;
Barca, Lorella;
Limone, Antonio;
Garzi Cosentino, Maria;
Campione, Agata;
Rinaldi, Antonio;
Dodaro, Saveria;
De Carlo, Esterina;
Greco, Sonia;
Vangeli, Valeria;
Paradiso, Rubina;
Mastroianni, Antonio

Publication type:

Article

Unveiling Prophage Diversity and Host Interactions in Liberibacter: Genomic Insights for Phage Therapy Against Citrus Huanglongbing.

Published in:

Biology (2079-7737), 2025, v. 14, n. 5, p. 576, doi. 10.3390/biology14050576

By:

Yin, Hui;
Wan, Jiaxing;
Zhang, Siyu;
Wu, Zhuozhuo;
Zhang, Wanshan;
Gao, Yuxia

Publication type:

Article

Reversed oxidative TCA (roTCA) for carbon fixation by an Acidimicrobiia strain from a saline lake.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae147

By:

Gao, Lei;
Liu, Lan;
Lv, Ai-Ping;
Fu, Lin;
Lian, Zheng-Han;
Nunoura, Takuro;
Hedlund, Brian P;
Xu, Qing-Yu;
Wu, Dildar;
Yang, Jian;
Ali, Mukhtiar;
Li, Meng-Meng;
Liu, Yong-Hong;
Antunes, André;
Jiang, Hong-Chen;
Cheng, Lei;
Jiao, Jian-Yu;
Li, Wen-Jun;
Fang, Bao-Zhu

Publication type:

Article

Lytic and temperate phage naturally coexist in a dynamic population model.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae093

By:

Kimchi, Ofer;
Meir, Yigal;
Wingreen, Ned S

Publication type:

Article

Hypervirulent Klebsiella pneumoniae employs genomic island encoded toxins against bacterial competitors in the gut.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae054

By:

Tan, Yi Han;
Arros, Patricio;
Berríos-Pastén, Camilo;
Wijaya, Indrik;
Chu, Wilson H W;
Chen, Yahua;
Cheam, Guoxiang;
Mohamed Naim, Ahmad Nazri;
Marcoleta, Andrés E;
Ravikrishnan, Aarthi;
Nagarajan, Niranjan;
Lagos, Rosalba;
Gan, Yunn-Hwen

Publication type:

Article

Staphylococcus epidermidis bacteriocin A37 kills natural competitors with a unique mechanism of action.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae044

By:

Puls, Jan-Samuel;
Winnerling, Benjamin;
Power, Jeffrey J;
Krüger, Annika M;
Brajtenbach, Dominik;
Johnson, Matthew;
Bilici, Kevser;
Camus, Laura;
Fließwasser, Thomas;
Schneider, Tanja;
Sahl, Hans-Georg;
Ghosal, Debnath;
Kubitscheck, Ulrich;
Heilbronner, Simon;
Grein, Fabian

Publication type:

Article

Ecological niches and assembly dynamics of diverse microbial consortia in the gastrointestine of goat kids.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae002

By:

Jiao, Jinzhen;
Wu, Jian;
Zhou, Chuanshe;
He, Zhixiong;
Tan, Zhiliang;
Wang, Min

Publication type:

Article

Genome reduction occurred in early Prochlorococcus with an unusually low effective population size.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad035

By:

Zhang, Hao;
Hellweger, Ferdi L;
Luo, Haiwei

Publication type:

Article

Episymbiotic Saccharibacteria induce intracellular lipid droplet production in their host bacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad034

By:

Dong, Pu-Ting;
Tian, Jing;
Kobayashi-Kirschvink, Koseki J;
Cen, Lujia;
McLean, Jeffrey S;
Bor, Batbileg;
Shi, Wenyuan;
He, Xuesong

Publication type:

Article

Temperature, pH, and oxygen availability contributed to the functional differentiation of ancient Nitrososphaeria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad031

By:

Luo, Zhen-Hao;
Li, Qi;
Xie, Yuan-Guo;
Lv, Ai-Ping;
Qi, Yan-Ling;
Li, Meng-Meng;
Qu, Yan-Ni;
Liu, Ze-Tao;
Li, Yu-Xian;
Rao, Yang-Zhi;
Jiao, Jian-Yu;
Liu, Lan;
Narsing Rao, Manik Prabhu;
Hedlund, Brian P;
Evans, Paul N;
Fang, Yuan;
Shu, Wen-Sheng;
Huang, Li-Nan;
Li, Wen-Jun;
Hua, Zheng-Shuang

Publication type:

Article

Identification and evolution of dual-topology membrane proteins.

Published in:

Nature Structural & Molecular Biology, 2006, v. 13, n. 2, p. 112, doi. 10.1038/nsmb1057

By:

Rapp, Mikaela;
Granseth, Erik;
Seppälä, Susanna;
von Heijne, Gunnar

Publication type:

Article

MLST revisited: the gene-by-gene approach to bacterial genomics.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 10, p. 728, doi. 10.1038/nrmicro3093

By:

Maiden, Martin C. J.;
van Rensburg, Melissa J. Jansen;
Bray, James E.;
Earle, Sarah G.;
Ford, Suzanne A.;
Jolley, Keith A.;
McCarthy, Noel D.

Publication type:

Article

Genome architecture and global gene regulation in bacteria: making progress towards a unified model?

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 5, p. 349, doi. 10.1038/nrmicro3007

By:

Dorman, Charles J.

Publication type:

Article

Shallow breathing: bacterial life at low O<sub>2</sub>.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 3, p. 205, doi. 10.1038/nrmicro2970

By:

Morris, Rachel L.;
Schmidt, Thomas M.

Publication type:

Article

Playing the 'Next-Generation Game'.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 2, p. 74, doi. 10.1038/nrmicro2956

By:

Seth-Smith, Helena

Publication type:

Article

The Bacillus subtilis endospore: assembly and functions of the multilayered coat.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 1, p. 33, doi. 10.1038/nrmicro2921

By:

McKenney, Peter T.;
Driks, Adam;
Eichenberger, Patrick

Publication type:

Article

Bacterial genomics: Regulators or by-products?

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 10, p. 671, doi. 10.1038/nrmicro2887

By:

David, Rachel

Publication type:

Article

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 9, p. 599, doi. 10.1038/nrmicro2850

By:

Loman, Nicholas J.;
Constantinidou, Chrystala;
Chan, Jacqueline Z. M.;
Halachev, Mihail;
Sergeant, Martin;
Penn, Charles W.;
Robinson, Esther R.;
Pallen, Mark J.

Publication type:

Article

The battle of the SNPs.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 1, p. 6, doi. 10.1038/nrmicro2716

By:

Downing, Tim

Publication type:

Article

Nucleoid occlusion and bacterial cell division.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 1, p. 8, doi. 10.1038/nrmicro2671

By:

Wu, Ling Juan;
Errington, Jeff

Publication type:

Article

Extreme genome reduction in symbiotic bacteria.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 1, p. 13, doi. 10.1038/nrmicro2670

By:

McCutcheon, John P.;
Moran, Nancy A.

Publication type:

Article

Real-time sequencing.

Published in:

Nature Reviews Microbiology, 2011, v. 9, n. 9, p. 633, doi. 10.1038/nrmicro2638

By:

Otto, Thomas D.

Publication type:

Article

It's alive!

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 7, p. 468, doi. 10.1038/nrmicro2399

By:

Reid, Adam J.

Publication type:

Article

Detecting genomic islands using bioinformatics approaches.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 5, p. 373, doi. 10.1038/nrmicro2350

By:

Langille, Morgan G. I.;
Hsiao, William W. L.;
Brinkman, Fiona S. L.

Publication type:

Article

A sequence of changes.

Published in:: 2010
Publication type:: Editorial

Immune evasion: CRISPRs hit the RNA target.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 2, p. 90, doi. 10.1038/nrmicro2305

By:

Molloy, Sheilagh

Publication type:

Article

Bacterial genetics: A tiny alternative.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 9, p. 620, doi. 10.1038/nrmicro2214

By:

Molloy, Sheilagh

Publication type:

Article

Testing the water: marine metagenomics.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 8, p. 552, doi. 10.1038/nrmicro2188

By:

Langridge, Gemma

Publication type:

Article

Milk and two oligosaccharides.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 7, p. 483, doi. 10.1038/nrmicro2169

By:

Walker, Alan

Publication type:

Article

Phage biology: Uncorking the phage capsid.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 7, p. 480, doi. 10.1038/nrmicro2180

By:

van Ooij, Christiaan

Publication type:

Article

Parasitology: PADding up for differentiation.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 7, p. 480, doi. 10.1038/nrmicro2168

By:

Jermy, Andrew

Publication type:

Article

Genome Watch: Breaking the ICE.

Published in:

Nature Reviews Microbiology, 2009, v. 7, n. 5, p. 328, doi. 10.1038/nrmicro2137

By:

Seth-Smith, Helena;
Croucher, Nicholas J.

Publication type:

Article

e-Science: relieving bottlenecks in large-scale genome analyses.

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 12, p. 948, doi. 10.1038/nrmicro2031

By:

Craddock, Tracy;
Harwood, Colin R.;
Hallinan, Jennifer;
Wipat, Anil

Publication type:

Article

Microbiology in the post-genomic era.

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 6, p. 419, doi. 10.1038/nrmicro1901

By:

Medini, Duccio;
Serruto, Davide;
Parkhill, Julian;
Relman, David A.;
Donati, Claudio;
Moxon, Richard;
Falkow, Stanley;
Rappuoli, Rino

Publication type:

Article

Sink or swim.

Published in:

Nature Reviews Microbiology, 2007, v. 5, n. 11, p. 834, doi. 10.1038/nrmicro1777

By:

Crossman, Lisa C.

Publication type:

Article

Bacterial therapeutics.

Published in:

Nature Reviews Microbiology, 2007, v. 5, n. 3, p. 170, doi. 10.1038/nrmicro1633

By:

Bentley, Stephen;
Sebaihia, Mohammed

Publication type:

Article

The authors reply.

Published in:

2007

By:

Mazel, Didier

Publication type:

Letter

Integrons: agents of bacterial evolution.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 8, p. 608, doi. 10.1038/nrmicro1462

By:

Mazel, Didier

Publication type:

Article

Bacterial genetics: A CRISPR tool for Yersinia analysis?

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 4, p. 276, doi. 10.1038/nrmicro1142

By:

Molloy, Sheilagh

Publication type:

Article

Predicting function.

Published in:: 2005
Publication type:: Editorial

Genome watch: Enemies within.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 1, p. 8, doi. 10.1038/nrmicro1071

By:

Bentley, Stephen;
Sebaihia, Mohammed;
Crossman, Lisa

Publication type:

Article

Genome watch: Pathogens in decay.

Published in:

Nature Reviews Microbiology, 2004, v. 2, n. 10, p. 774, doi. 10.1038/nrmicro1009

By:

Cerdeño-Tárraga, Ana;
Thomson, Nicholas;
Parkhill, Julian

Publication type:

Article

Small change: keeping pace with microevolution.

Published in:

Nature Reviews Microbiology, 2004, v. 2, n. 6, p. 483, doi. 10.1038/nrmicro904

By:

Feil, Edward J.

Publication type:

Article