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Genome streamlining in Parcubacteria transitioning from soil to groundwater.
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- Environmental Microbiome, 2024, v. 19, n. 1, p. 1, doi. 10.1186/s40793-024-00581-6
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Editorial: Last universal common ancestor and origin of life: what uncultivated Bacteria, Archaea, and extremophiles can tell us.
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- Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1412625
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- Article
Glyphosate-Induced Phosphonatase Operons in Soil Bacteria of the Genus Achromobacter.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 12, p. 6409, doi. 10.3390/ijms25126409
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Microbiota succession influences nematode physiology in a beetle microcosm ecosystem.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49513-5
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- Article
Rule-based omics mining reveals antimicrobial macrocyclic peptides against drug-resistant clinical isolates.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49215-y
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- Article
Assessment of the pathogen genomics landscape highlights disparities and challenges for effective AMR Surveillance and outbreak response in the East African community.
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- BMC Public Health, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12889-024-18990-0
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Identification of type VI secretion system effector-immunity pairs using structural bioinformatics.
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- Molecular Systems Biology, 2024, v. 20, n. 6, p. 702, doi. 10.1038/s44320-024-00035-8
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#6 A LAB-MADE GENOME BROUGHT TO LIFEI.
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- Biologist, 2024, v. 71, n. 2, p. 48
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- Article
Genome editing in Acinetobacter baumannii through enhanced natural transformation.
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- Journal of Basic Microbiology, 2024, v. 64, n. 6, p. 1, doi. 10.1002/jobm.202300644
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Omics technology draws a comprehensive heavy metal resistance strategy in bacteria.
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- World Journal of Microbiology & Biotechnology, 2024, v. 40, n. 6, p. 1, doi. 10.1007/s11274-024-04005-y
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- Article
Adaptations to nitrogen availability drive ecological divergence of chemosynthetic symbionts.
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- PLoS Genetics, 2024, v. 20, n. 5, p. 1, doi. 10.1371/journal.pgen.1011295
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Microbiological and molecular studies on a multidrug-resistant Pseudomonas aeruginosa from a liver transplant patient with urinary tract infection in Egypt.
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- BMC Microbiology, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12866-024-03318-0
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- Article
Construction of high-quality genomes and gene catalogue for culturable microbes of sugarcane (Saccharum spp.).
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- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03379-w
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- Article
Generation and maintenance of the circularized multimeric IS26-associated translocatable unit encoding multidrug resistance.
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- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06312-4
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Detection of florfenicol resistance in opportunistic Acinetobacter spp. infections in rural Thailand.
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- Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1368813
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- Article
Nonribosomal Peptide Synthetase Specific Genome Amplification Using Rolling Circle Amplification for Targeted Gene Sequencing.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 10, p. 5089, doi. 10.3390/ijms25105089
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Horizontal gene transfer in plant microbiomes: integrons as hotspots for cross-species gene exchange.
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- Frontiers in Microbiology, 2024, p. 01, doi. 10.3389/fmicb.2024.1338026
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Metagenomics datasets of water and sediments from eutrophication-impacted artificial lakes in South Africa.
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- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03286-0
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- Article
Quorum sensing in bacteria: in silico protein analysis, ecophysiology, and reconstruction of their evolutionary history.
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- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10355-6
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Predicting metabolic modules in incomplete bacterial genomes with MetaPathPredict.
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- eLife, 2024, p. 1, doi. 10.7554/eLife.85749
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- Article
Synesth: Comprehensive Syntenic Reconciliation with Unsampled Lineages.
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- Algorithms, 2024, v. 17, n. 5, p. 186, doi. 10.3390/a17050186
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- Article
RecGraph: recombination-aware alignment of sequences to variation graphs.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae292
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- Article
Parsnp 2.0: scalable core-genome alignment for massive microbial datasets.
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- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae311
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AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods.
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- Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae229
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- Article
Duplicate Gene Expression and Possible Mechanisms of Paralog Retention During Bacterial Genome Expansion.
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- Genome Biology & Evolution, 2024, v. 16, n. 5, p. 1, doi. 10.1093/gbe/evae089
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- Article
Genomic characterization of antimicrobial resistance in 61 aquatic bacterial isolates.
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- Journal of Veterinary Diagnostic Investigation, 2024, v. 36, n. 3, p. 393, doi. 10.1177/10406387241241042
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- Article
Exploring the Frozen Armory: Antiphage Defense Systems in Cold-Adapted Bacteria with a Focus on CRISPR-Cas Systems.
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- Microorganisms, 2024, v. 12, n. 5, p. 1028, doi. 10.3390/microorganisms12051028
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Is gut microbiota of patients with ALS different from that of healthy individuals?
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- Turkish Journal of Medical Sciences, 2024, v. 54, n. 3, p. 579, doi. 10.55730/1300-0144.5825
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The complete genome sequence of unculturable Mycoplasma faucium obtained through clinical metagenomic next-generation sequencing.
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- Frontiers in Cellular & Infection Microbiology, 2024, p. 1, doi. 10.3389/fcimb.2024.1368923
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KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes.
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- PLoS Genetics, 2024, v. 20, n. 4, p. 1, doi. 10.1371/journal.pgen.1011184
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- Article
OrthoRefine: automated enhancement of prior ortholog identification via synteny.
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- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05786-7
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- Article
The microbiome of a Pacific moon jellyfish Aurelia coerulea.
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- PLoS ONE, 2024, v. 19, n. 4, p. 1, doi. 10.1371/journal.pone.0298002
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- Article
Many purported pseudogenes in bacterial genomes are bona fide genes.
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- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10137-0
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- Article
Moving toward the Inclusion of Epigenomics in Bacterial Genome Evolution: Perspectives and Challenges.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 8, p. 4425, doi. 10.3390/ijms25084425
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Comprehensive analysis of the CRISPR-Cas systems in Streptococcus thermophilus strains isolated from traditional yogurts.
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- Antonie van Leeuwenhoek, 2024, v. 117, n. 1, p. 1, doi. 10.1007/s10482-024-01960-2
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Global epistasis in plasmid-mediated antimicrobial resistance.
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- Molecular Systems Biology, 2024, v. 20, n. 4, p. 311, doi. 10.1038/s44320-024-00012-1
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Patchy and widespread distribution of bacterial translation arrest peptides associated with the protein localization machinery.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46993-3
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Functional analyses of bacterial genomes found in Symbiodiniaceae genome assemblies.
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- Environmental Microbiology Reports, 2024, v. 16, n. 2, p. 1, doi. 10.1111/1758-2229.13238
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Retention of an Endosymbiont for the Production of a Single Molecule.
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- Genome Biology & Evolution, 2024, v. 16, n. 4, p. 1, doi. 10.1093/gbe/evae075
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- Article
Response of soil bacteria to PUREX chemicals suggests biomarker utility and bioremediation potential.
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- Journal of Radioanalytical & Nuclear Chemistry, 2024, v. 333, n. 4, p. 1899, doi. 10.1007/s10967-024-09389-7
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- Article
Ecological Trait-Based Digital Categorization of Microbial Genomes for Denitrification Potential.
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- Microorganisms, 2024, v. 12, n. 4, p. 791, doi. 10.3390/microorganisms12040791
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- Article
Analysis of twelve genomes of the bacterium Kerstersia gyiorum from brown-throated sloths (Bradypus variegatus), the first from a non-human host.
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- PeerJ, 2024, p. 1, doi. 10.7717/peerj.17206
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Comprehensive genome sequence analysis of Ralstonia solanacearum gd-2, a phylotype I sequevar 15 strain collected from a tobacco bacterial phytopathogen.
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- Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1335081
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- Article
The spontaneously produced lysogenic prophage phi456 promotes bacterial resistance to adverse environments and enhances the colonization ability of avian pathogenic Escherichia coli strain DE456.
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- Veterinary Research, 2024, v. 55, n. 1, p. 1, doi. 10.1186/s13567-024-01292-z
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Molecular characterization of non-aureus staphylococci and Mammaliicoccus from Hipposideros bats in Southwest Nigeria.
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- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-57190-z
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- Article
Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics.
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- Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01775-3
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Unveiling microbial guilds and symbiotic relationships in Antarctic sponge microbiomes.
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- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-56480-w
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- Article
Dinucleotide biases in the genomes of prokaryotic and eukaryotic dsDNA viruses and their hosts.
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- Molecular Ecology, 2024, v. 33, n. 6, p. 1, doi. 10.1111/mec.17287
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Enhancing coevolutionary signals in protein–protein interaction prediction through clade-wise alignment integration.
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- Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-55655-9
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- Article
Bacterial isolation and genome analysis of a novel Klebsiella quasipneumoniae phage in southwest China's karst area.
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- Virology Journal, 2024, v. 21, n. 1, p. 1, doi. 10.1186/s12985-024-02321-1
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