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Escherichia coli adaptation under prolonged resource exhaustion is characterized by extreme parallelism and frequent historical contingency.
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- PLoS Genetics, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.pgen.1011333
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Comparative genomics and secretome profiling of Enterobacter cloacae SBP-8.
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- Biologia, 2024, v. 79, n. 6, p. 1957, doi. 10.1007/s11756-024-01664-y
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The microbiome of the lichen Lobaria pulmonaria varies according to climate on a subcontinental scale.
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- Environmental Microbiology Reports, 2024, v. 16, n. 3, p. 1, doi. 10.1111/1758-2229.13289
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The ArgR-Regulated ADI Pathway Facilitates the Survival of Vibrio fluvialis under Acidic Conditions.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 11, p. 5679, doi. 10.3390/ijms25115679
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Adaptations to nitrogen availability drive ecological divergence of chemosynthetic symbionts.
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- PLoS Genetics, 2024, v. 20, n. 5, p. 1, doi. 10.1371/journal.pgen.1011295
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Enhanced surface colonisation and competition during bacterial adaptation to a fungus.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48812-1
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Lipase-mediated detoxification of host-derived antimicrobial fatty acids by Staphylococcus aureus.
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- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06278-3
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Arctic plasmidome analysis reveals distinct relationships among associated antimicrobial resistance genes and virulence genes along anthropogenic gradients.
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- Global Change Biology, 2024, v. 30, n. 5, p. 1, doi. 10.1111/gcb.17293
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Improvement of violacein production using abiotic stresses and microbial adaptation.
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- World Journal of Microbiology & Biotechnology, 2024, v. 40, n. 5, p. 1, doi. 10.1007/s11274-024-03966-4
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Adaptation of the Mycobacterium tuberculosis transcriptome to biofilm growth.
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- PLoS Pathogens, 2024, v. 20, n. 4, p. 1, doi. 10.1371/journal.ppat.1012124
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Bacterial membrane vesicles: orchestrators of interkingdom interactions in microbial communities for environmental adaptation and pathogenic dynamics.
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- Frontiers in Immunology, 2024, p. 01, doi. 10.3389/fimmu.2024.1371317
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Synthetically-primed adaptation of Pseudomonas putida to a non-native substrate D-xylose.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46812-9
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The Mechanism of Inhibition of Mycobacterial (p)ppGpp Synthetases by a Synthetic Analog of Erogorgiaene.
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- Biochemistry (00062979), 2024, v. 89, n. 3, p. 407, doi. 10.1134/S0006297924030027
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Horizontal gene transfer after faecal microbiota transplantation in adolescents with obesity.
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- Microbiome, 2024, v. 12, p. 1, doi. 10.1186/s40168-024-01748-6
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Adaptive Evolution of Pseudomonas aeruginosa in Human Airways Shows Phenotypic Convergence Despite Diverse Patterns of Genomic Changes.
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- Molecular Biology & Evolution, 2024, v. 41, n. 2, p. 1, doi. 10.1093/molbev/msae022
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Inactivation of lmo0946 (sif) induces the SOS response and MGEs mobilization and silences the general stress response and virulence program in Listeria monocytogenes.
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- Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2023.1324062
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Microbial evolution through horizontal gene transfer by mobile genetic elements.
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- Microbial Biotechnology, 2024, v. 17, n. 1, p. 1, doi. 10.1111/1751-7915.14408
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Tentaclins—A Novel Family of Phage Receptor-Binding Proteins That Can Be Hypermutated by DGR Systems.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 24, p. 17324, doi. 10.3390/ijms242417324
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An atypical GdpP enzyme linking cyclic nucleotide metabolism to osmotic tolerance and gene regulation in Mycoplasma bovis.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1250368
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Novel WYL domain-containing transcriptional activator acts in response to genotoxic stress in rapidly growing mycobacteria.
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- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05592-6
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Adaptive laboratory evolution of Salmonella enterica in acid stress.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1285421
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Bacterial adaptation to rhizosphere soil is independent of the selective pressure exerted by the herbicide saflufenacil, through the modulation of catalase and glutathione S-transferase.
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- PLoS ONE, 2023, v. 18, n. 11, p. 1, doi. 10.1371/journal.pone.0292967
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Importance of biofilm formation for promoting plant growth under salt stress in Pseudomonas putida KT2440.
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- Journal of Basic Microbiology, 2023, v. 63, n. 11, p. 1219, doi. 10.1002/jobm.202300215
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Enrichment of Aerobic and Anaerobic Hydrocarbon-Degrading Bacteria from Multicontaminated Marine Sediment in Mar Piccolo Site (Taranto, Italy).
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- Microorganisms, 2023, v. 11, n. 11, p. 2782, doi. 10.3390/microorganisms11112782
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Microbial degradation and assimilation of veratric acid in oxic and anoxic groundwaters.
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- Frontiers in Microbiology, 2023, p. 01, doi. 10.3389/fmicb.2023.1252498
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Pangenome-level analysis of nucleoid-associated proteins in the Acidithiobacillia class: insights into their functional roles in mobile genetic elements biology.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1271138
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Bioinformatic and functional characterization of cyclic-di-GMP metabolic proteins in Vibrio alginolyticus unveils key diguanylate cyclases controlling multiple biofilm-associated phenotypes.
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- Frontiers in Microbiology, 2023, p. 01, doi. 10.3389/fmicb.2023.1258415
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Bacterial motility can govern the dynamics of antibiotic resistance evolution.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41196-8
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Will tomorrow's mineral materials be grown?
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- Microbial Biotechnology, 2023, v. 16, n. 9, p. 1713, doi. 10.1111/1751-7915.14298
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- Article
Comparison of Structural Features of CRISPR-Cas Systems in Thermophilic Bacteria.
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- Microorganisms, 2023, v. 11, n. 9, p. 2275, doi. 10.3390/microorganisms11092275
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- Article
Dynamic Transcriptional Landscape of Mycobacterium smegmatis under Cold Stress.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 16, p. 12706, doi. 10.3390/ijms241612706
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Ecotype formation and prophage domestication during gut bacterial evolution.
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- BioEssays, 2023, v. 45, n. 8, p. 1, doi. 10.1002/bies.202300063
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Integration of Meta-Multi-Omics Data Using Probabilistic Graphs and External Knowledge.
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- Cells (2073-4409), 2023, v. 12, n. 15, p. 1998, doi. 10.3390/cells12151998
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Evolutionary barriers to horizontal gene transfer in macrophage-associated Salmonella.
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- Evolution Letters, 2023, v. 7, n. 4, p. 227, doi. 10.1093/evlett/qrad020
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Residue Lys219 of CpxR is critical in the regulation of the antibiotic resistance of Escherichia coli.
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- Journal of Antimicrobial Chemotherapy (JAC), 2023, v. 78, n. 8, p. 1859, doi. 10.1093/jac/dkad171
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In Silico Functional Characterization of a Hypothetical Protein From Pasteurella Multocida Reveals a Novel S -Adenosylmethionine-Dependent Methyltransferase Activity.
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- Bioinformatics & Biology Insights, 2023, p. 1, doi. 10.1177/11779322231184024
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Fermented Foods as a Potential Vehicle of Antimicrobial-Resistant Bacteria and Genes.
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- Fermentation (Basel), 2023, v. 9, n. 7, p. 688, doi. 10.3390/fermentation9070688
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Metagenomic surveillance and comparative genomic analysis of Chlamydia psittaci in patients with pneumonia.
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- Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1157888
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Insights into S. aureus -Induced Bone Deformation in a Mouse Model of Chronic Osteomyelitis Using Fluorescence and Raman Imaging.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 11, p. 9762, doi. 10.3390/ijms24119762
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Bioluminescence Contributes to the Adaptation of Deep-Sea Bacterium Photobacterium phosphoreum ANT-2200 to High Hydrostatic Pressure.
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- Microorganisms, 2023, v. 11, n. 6, p. 1362, doi. 10.3390/microorganisms11061362
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The Fitness Effects of Codon Composition of the Horizontally Transferred Antibiotic Resistance Genes Intensify at Sub-lethal Antibiotic Levels.
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- Molecular Biology & Evolution, 2023, v. 40, n. 6, p. 1, doi. 10.1093/molbev/msad123
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Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38521-6
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- Article
Metagenomic signatures of balancing selection in the human gut.
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- Molecular Ecology, 2023, v. 32, n. 10, p. 2582, doi. 10.1111/mec.16474
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Highly diverse and unknown viruses may enhance Antarctic endoliths' adaptability.
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- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01554-6
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Biocide Susceptibility and Antimicrobial Resistance of Escherichia coli Isolated from Swine Feces, Pork Meat and Humans in Germany.
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- Antibiotics (2079-6382), 2023, v. 12, n. 5, p. 823, doi. 10.3390/antibiotics12050823
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HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer.
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- Bioinformatics, 2023, v. 39, n. 5, p. 1, doi. 10.1093/bioinformatics/btad283
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Effect of Cultivable Bacteria and Fungi on the Limestone Weathering Used in Historical Buildings.
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- Diversity (14242818), 2023, v. 15, n. 5, p. 587, doi. 10.3390/d15050587
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A Selective Bottleneck During Host Entry Drives the Evolution of New Legume Symbionts.
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- Molecular Biology & Evolution, 2023, v. 40, n. 5, p. 1, doi. 10.1093/molbev/msad116
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The Genetic Architecture of Adaptation to Leaf and Root Bacterial Microbiota in Arabidopsis thaliana.
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- Molecular Biology & Evolution, 2023, v. 40, n. 5, p. 1, doi. 10.1093/molbev/msad093
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The Role of Intercellular Signaling in the Regulation of Bacterial Adaptive Proliferation.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 8, p. 7266, doi. 10.3390/ijms24087266
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- Article