Works matching DE "BACTERIA phylogeny"

Results: 457

Bacterial growth and environmental adaptation via thiamine biosynthesis and thiamine-mediated metabolic interactions.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae157

By:

Xu, Xihui;
Li, Can;
Cao, Weimiao;
Yan, Lulu;
Cao, Lulu;
Han, Qi;
Gao, Minling;
Chen, Yahua;
Shen, Zhenguo;
Jiang, Jiandong;
Chen, Chen

Publication type:

Article

Reversed oxidative TCA (roTCA) for carbon fixation by an Acidimicrobiia strain from a saline lake.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae147

By:

Gao, Lei;
Liu, Lan;
Lv, Ai-Ping;
Fu, Lin;
Lian, Zheng-Han;
Nunoura, Takuro;
Hedlund, Brian P;
Xu, Qing-Yu;
Wu, Dildar;
Yang, Jian;
Ali, Mukhtiar;
Li, Meng-Meng;
Liu, Yong-Hong;
Antunes, André;
Jiang, Hong-Chen;
Cheng, Lei;
Jiao, Jian-Yu;
Li, Wen-Jun;
Fang, Bao-Zhu

Publication type:

Article

Phylosymbiosis shapes skin bacterial communities and pathogen-protective function in Appalachian salamanders.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae104

By:

Osborne, Owen G;
Jiménez, Randall R;
Byrne, Allison Q;
Gratwicke, Brian;
Ellison, Amy;
Muletz-Wolz, Carly R

Publication type:

Article

Evolutionary history of tyrosine-supplementing endosymbionts in pollen-feeding beetles.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae080

By:

Wierz, Jürgen C;
Gimmel, Matthew L;
Huthmacher, Selina;
Engl, Tobias;
Kaltenpoth, Martin

Publication type:

Article

Phylogenetic distribution and experimental characterization of corrinoid production and dependence in soil bacterial isolates.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae068

By:

Alvarez-Aponte, Zoila I;
Govindaraju, Alekhya M;
Hallberg, Zachary F;
Nicolas, Alexa M;
Green, Myka A;
Mok, Kenny C;
Fonseca-García, Citlali;
Coleman-Derr, Devin;
Brodie, Eoin L;
Carlson, Hans K;
Taga, Michiko E

Publication type:

Article

Genome reduction occurred in early Prochlorococcus with an unusually low effective population size.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad035

By:

Zhang, Hao;
Hellweger, Ferdi L;
Luo, Haiwei

Publication type:

Article

Members of the class Candidatus Ordosarchaeia imply an alternative evolutionary scenario from methanogens to haloarchaea.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrad033

By:

Zhao, Dahe;
Zhang, Shengjie;
Chen, Junyu;
Zhao, Juanjuan;
An, Peng;
Xiang, Hua

Publication type:

Article

Bacterial community structure in High-Arctic snow and freshwater as revealed by pyrosequencing of 16S rRNA genes and cultivation.

Published in:

Polar Research, 2013, v. 32, n. 1, p. 1, doi. 10.3402/polar.v32i0.17390

By:

Møller, Annette K.;
Søborg, Ditte A.;
Abu Al-Soud, Waleed;
Sørensen, Søren J.;
Kroer, Niels

Publication type:

Article

Evidence for the presence of key chlorophyll-biosynthesis-related proteins in the genus Rubrobacter (Phylum Actinobacteria) and its implications for the evolution and origin of photosynthesis.

Published in:

Photosynthesis Research, 2016, v. 127, n. 2, p. 201, doi. 10.1007/s11120-015-0177-y

By:

Gupta, Radhey;
Khadka, Bijendra

Publication type:

Article

Contributions of Composition and Interactions to Bacterial Respiration Are Reliant on the Phylogenetic Similarity of the Measured Community.

Published in:

Microbial Ecology, 2017, v. 74, n. 3, p. 757, doi. 10.1007/s00248-017-0982-2

By:

Rivett, Damian;
Lilley, Andrew;
Connett, Gary;
Carroll, Mary;
Legg, Julian;
Bruce, Kenneth

Publication type:

Article

Assembly of Active Bacterial and Fungal Communities Along a Natural Environmental Gradient.

Published in:

Microbial Ecology, 2016, v. 71, n. 1, p. 57, doi. 10.1007/s00248-015-0655-y

By:

Mueller, Rebecca;
Gallegos-Graves, Laverne;
Zak, Donald;
Kuske, Cheryl

Publication type:

Article

Some Like it High! Phylogenetic Diversity of High-Elevation Cyanobacterial Community from Biological Soil Crusts of Western Himalaya.

Published in:

Microbial Ecology, 2016, v. 71, n. 1, p. 113, doi. 10.1007/s00248-015-0694-4

By:

Čapková, Kateřina;
Hauer, Tomáš;
Řeháková, Klára;
Doležal, Jiří

Publication type:

Article

Expansion of Cultured Bacterial Diversity by Large-Scale Dilution-to-Extinction Culturing from a Single Seawater Sample.

Published in:

Microbial Ecology, 2016, v. 71, n. 1, p. 29, doi. 10.1007/s00248-015-0695-3

By:

Yang, Seung-Jo;
Kang, Ilnam;
Cho, Jang-Cheon

Publication type:

Article

Bacterial Community Structure of Autotrophic Denitrification Biocathode by 454 Pyrosequencing of the 16S rRNA Gene.

Published in:

Microbial Ecology, 2015, v. 69, n. 3, p. 492, doi. 10.1007/s00248-014-0492-4

By:

Xiao, Yong;
Zheng, Yue;
Wu, Song;
Yang, Zhao-Hui;
Zhao, Feng

Publication type:

Article

Evidence of Novel Phylogenetic Lineages of Methanogenic Archaea from Hypersaline Microbial Mats.

Published in:

Microbial Ecology, 2015, v. 69, n. 1, p. 106, doi. 10.1007/s00248-014-0473-7

By:

García-Maldonado, José;
Bebout, Brad;
Everroad, R.;
López-Cortés, Alejandro

Publication type:

Article

Phylogenetic Diversity of Actinobacteria Associated with Soft Coral Alcyonium gracllimum and Stony Coral Tubastraea coccinea in the East China Sea.

Published in:

Microbial Ecology, 2013, v. 66, n. 1, p. 189, doi. 10.1007/s00248-013-0205-4

By:

Yang, Shan;
Sun, Wei;
Tang, Cen;
Jin, Liling;
Zhang, Fengli;
Li, Zhiyong

Publication type:

Article

SVAMP: sequence variation analysis, maps and phylogeny.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2227, doi. 10.1093/bioinformatics/btu176

By:

Naeem, Raeece;
Hidayah, Lailatul;
Preston, Mark D.;
Clark, Taane G.;
Pain, Arnab

Publication type:

Article

ISOLATION OF HALOPHILIC BACTERIA FROM INLAND PETROLEUM-PRODUCING WELLS.

Published in:

Fine Focus, 2017, v. 3, n. 2, p. 101

By:

LINDSEY, MAEDGEN Q.;
HUDDLESTON, JENNIFER R.

Publication type:

Article

FAD/NADH Dependent Oxidoreductases: From Different Amino Acid Sequences to Similar Protein Shapes for Playing an Ancient Function.

Published in:

Journal of Clinical Medicine, 2019, v. 8, n. 12, p. 2117, doi. 10.3390/jcm8122117

By:

Trisolini, Lucia;
Gambacorta, Nicola;
Gorgoglione, Ruggiero;
Montaruli, Michele;
Laera, Luna;
Colella, Francesco;
Volpicella, Mariateresa;
De Grassi, Anna;
Pierri, Ciro Leonardo

Publication type:

Article

Revisiting the phylogeny of Wolbachia in Collembola.

Published in:

Ecology & Evolution (20457758), 2017, v. 7, n. 7, p. 2009, doi. 10.1002/ece3.2738

By:

Ma, Yao;
Chen, Wan ‐ Jun;
Li, Zhao ‐ Hui;
Zhang, Feng;
Gao, Yan;
Luan, Yun ‐ Xia

Publication type:

Article

PM 7/21 (2) <italic>Ralstonia solanacearum</italic>,<italic> R. pseudosolanacearum</italic> and <italic>R. syzygii</italic> (<italic>Ralstonia solanacearum</italic> species complex).

Published in:: EPPO Bulletin, 2018, v. 48, n. 1, p. 32, doi. 10.1111/epp.12454
Publication type:: Article

Comparative analysis of the Hom family of outer membrane proteins in isolates from two geographically distinct regions: The United States and South Korea.

Published in:

Helicobacter, 2018, v. 23, n. 2, p. 1, doi. 10.1111/hel.12461

By:

Servetas, Stephanie L.;
Kim, Aeryun;
Su, Hanfu;
Cha, Jeong‐Heon;
Merrell, D. Scott

Publication type:

Article

<italic>Cholesterol‐</italic>α<italic>‐glucosyltransferase</italic> gene is present in most <italic>Helicobacter</italic> species including gastric non‐<italic>Helicobacter pylori</italic> helicobacters obtained from Japanese patients

Published in:

Helicobacter, 2018, v. 23, n. 1, p. 1, doi. 10.1111/hel.12449

By:

Kawakubo, Masatomo;
Horiuchi, Kazuki;
Matsumoto, Takehisa;
Nakayama, Jun;
Akamatsu, Taiji;
Katsuyama, Tsutomu;
Ota, Hiroyoshi;
Sagara, Junji

Publication type:

Article

Characterization, phylogenetic distribution and evolutionary trajectories of diverse hydrocarbon degrading microorganisms isolated from refinery sludge.

Published in:

3 Biotech, 2018, v. 8, n. 6, p. 1, doi. 10.1007/s13205-018-1297-9

By:

Dasgupta, Debdeep;
Jasmine, Jublee;
Mukherji, Suparna

Publication type:

Article

GENOTYPING OF BACILLUS SPP. ISOLATE COLLECTION FROM NATURAL SAMPLES.

Published in:

Genetika (0534-0012), 2017, v. 49, n. 2, p. 445, doi. 10.2298/GENSR1702445D

By:

DRAGANIĆ, Veselin;
LOZO, Jelena;
BIOČANIN, Marjan;
DIMKIĆ, Ivica;
GARALEJIĆ, Eliana;
FIRA, Djordje;
STANKOVIĆ, Slaviša;
BERIĆ, Tanja

Publication type:

Article

Cultivation-success of rare soil bacteria is not influenced by incubation time and growth medium.

Published in:

PLoS ONE, 2019, v. 14, n. 01, p. 1, doi. 10.1371/journal.pone.0210073

By:

Kurm, Viola;
van der Putten, Wim H.;
Hol, W. H. Gera

Publication type:

Article

Tracking a serial killer: Integrating phylogenetic relationships, epidemiology, and geography for two invasive meningococcal disease outbreaks.

Published in:

PLoS ONE, 2018, v. 13, n. 11, p. 1, doi. 10.1371/journal.pone.0202615

By:

Ezeoke, Ifeoma;
Galac, Madeline R.;
Lin, Ying;
Liem, Alvin T.;
Roth, Pierce A.;
Kilianski, Andrew;
Gibbons, Henry S.;
Bloch, Danielle;
Kornblum, John;
Del Rosso, Paula;
Janies, Daniel A.;
Weiss, Don

Publication type:

Article

Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing.

Published in:

PLoS ONE, 2018, v. 13, n. 8, p. 1, doi. 10.1371/journal.pone.0201882

By:

Almeida, Fernanda;
Seribelli, Amanda Aparecida;
Medeiros, Marta Inês Cazentini;
Rodrigues, Dália dos Prazeres;
MelloVarani, Alessandro de;
Luo, Yan;
Allard, Marc W.;
Falcão, Juliana Pfrimer

Publication type:

Article

Variability in the anatoxin gene clusters of Cuspidothrix issatschenkoi from Germany, New Zealand, China and Japan.

Published in:

PLoS ONE, 2018, v. 13, n. 7, p. 1, doi. 10.1371/journal.pone.0200774

By:

Ballot, Andreas;
Scherer, Pia I.;
Wood, Susanna A.

Publication type:

Article

Phylogenetic relationships, biofilm formation, motility, antibiotic resistance and extended virulence genotypes among Escherichia coli strains from women with community-onset primitive acute pyelonephritis.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0196260

By:

Pompilio, Arianna;
Crocetta, Valentina;
Savini, Vincenzo;
Petrelli, Dezemona;
Di Nicola, Marta;
Bucco, Silvia;
Amoroso, Luigi;
Bonomini, Mario;
Di Bonaventura, Giovanni

Publication type:

Article

Codon usage bias reveals genomic adaptations to environmental conditions in an acidophilic consortium.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0195869

By:

Hart, Andrew;
Cortés, María Paz;
Latorre, Mauricio;
Martinez, Servet

Publication type:

Article

Distribution of siderophore gene systems on a Vibrionaceae phylogeny: Database searches, phylogenetic analyses and evolutionary perspectives.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0191860

By:

Thode, Sunniva Katharina;
Rojek, Ewelina;
Kozlowski, Mikolaj;
Ahmad, Rafi;
Haugen, Peik

Publication type:

Article

Phylogenetic analysis of Paenibacillus popilliae and its related taxa based on housekeeping genes.

Published in:

Journal of Insect Biotechnology & Sericology, 2013, v. 82, n. 1, p. 1

By:

Kazuhiro liyama;
Oumi Nishi;
Hiroaki Mon;
Jae Man Lee;
Takahiro Kusakabe;
Shin-ichiro Asano;
Chisa Yasunaga-Aoki;
Susumu Shimizu

Publication type:

Article

Genotypic characteristics and biofilm formation among Escherichia coli isolates from Indian women with acute cystitis.

Published in:

Transactions of the Royal Society of Tropical Medicine & Hygiene, 2013, v. 107, n. 3, p. 183, doi. 10.1093/trstmh/trs090

By:

Agarwal, Jyotsna;
Mishra, Bharti;
Srivastava, Sugandha;
Srivastava, Richa

Publication type:

Article

Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing.

Published in:

Nature Genetics, 2012, v. 44, n. 4, p. 413, doi. 10.1038/ng.2214

By:

Harris, Simon R;
Clarke, Ian N;
Seth-Smith, Helena M B;
Solomon, Anthony W;
Cutcliffe, Lesley T;
Marsh, Peter;
Skilton, Rachel J;
Holland, Martin J;
Mabey, David;
Peeling, Rosanna W;
Lewis, David A;
Spratt, Brian G;
Unemo, Magnus;
Persson, Kenneth;
Bjartling, Carina;
Brunham, Robert;
de Vries, Henry J C;
Morré, Servaas A;
Speksnijder, Arjen;
Bébéar, Cécile M

Publication type:

Article

Physiologic and metabolic characterization of a new marine isolate (BM39) of Pantoea sp. producing high levels of exopolysaccharide.

Published in:

Microbial Cell Factories, 2013, v. 12, n. 1, p. 1, doi. 10.1186/1475-2859-12-10

By:

Silvi, Silvia;
Barghini, Paolo;
Aquilanti, Arianna;
Juarez-Jimenez, Belen;
Fenice, Massimiliano

Publication type:

Article

Comparative genomic analysis of Streptococcus suis reveals significant genomic diversity among different serotypes.

Published in:: BMC Genomics, 2011, v. 12, n. Suppl 2, p. 523, doi. 10.1186/1471-2164-12-523
Publication type:: Article

Identification and characterization of 2-keto-3-deoxy- l-rhamnonate dehydrogenase belonging to the MDR superfamily from the thermoacidophilic bacterium Sulfobacillus thermosulfidooxidans: implications to l-rhamnose metabolism in archaea.

Published in:

Extremophiles, 2015, v. 19, n. 2, p. 469, doi. 10.1007/s00792-015-0731-8

By:

Bae, Jungdon;
Kim, Suk;
Lee, Sun

Publication type:

Article

Preparation of poly(3-hydroxybutyrate-co-hydroxyvalerate) films from halophilic archaea and their potential use in drug delivery.

Published in:

Extremophiles, 2015, v. 19, n. 2, p. 515, doi. 10.1007/s00792-015-0735-4

By:

Danis, Ozkan;
Ogan, Ayse;
Tatlican, Pınar;
Attar, Azade;
Cakmakci, Emrah;
Mertoglu, Bulent;
Birbir, Meral

Publication type:

Article

Culturable diversity of aerobic halophilic archaea (Fam. Halobacteriaceae) from hypersaline, meromictic Transylvanian lakes.

Published in:

Extremophiles, 2015, v. 19, n. 2, p. 525, doi. 10.1007/s00792-015-0738-1

By:

Baricz, Andreea;
Cristea, Adorján;
Muntean, Vasile;
Teodosiu, Gabriela;
Andrei, Adrian-Ştefan;
Molnár, Imola;
Alexe, Mircea;
Rakosy-Tican, Elena;
Banciu, Horia

Publication type:

Article

Genome sequence of a novel deep-sea vent epsilonproteobacterial phage provides new insight into the co-evolution of Epsilonproteobacteria and their phages.

Published in:

Extremophiles, 2013, v. 17, n. 3, p. 405, doi. 10.1007/s00792-013-0529-5

By:

Yoshida-Takashima, Yukari;
Takaki, Yoshihiro;
Shimamura, Shigeru;
Nunoura, Takuro;
Takai, Ken

Publication type:

Article

Haloferax chudinovii sp. nov., a halophilic archaeon from Permian potassium salt deposits.

Published in:

Extremophiles, 2013, v. 17, n. 3, p. 499, doi. 10.1007/s00792-013-0534-8

By:

Saralov, Alexander;
Baslerov, Roman;
Kuznetsov, Boris

Publication type:

Article

Isolation and characterization of two novel alkalitolerant sulfidogens from a Thiopaq bioreactor, Desulfonatronum alkalitolerans sp. nov., and Sulfurospirillum alkalitolerans sp. nov.

Published in:

Extremophiles, 2013, v. 17, n. 3, p. 535, doi. 10.1007/s00792-013-0538-4

By:

Sorokin, D.;
Tourova, T.;
Muyzer, G.

Publication type:

Article

Detection and phylogenetic analysis of Mycoplasma hyopneumoniae from Tibetan pigs in western China.

Published in:

Tropical Animal Health & Production, 2017, v. 49, n. 7, p. 1545, doi. 10.1007/s11250-017-1365-x

By:

Qiu, Gang;
Rui, Yapei;
Li, Kun;
Huang, Shucheng;
Han, Zhaoqing;
Wang, Xiaoqiang;
Jiang, Wenteng;
Luo, Houqiang;
Lan, Yanfang;
Li, Jiakui

Publication type:

Article

Hafnia, an enterobacterial genus naturally resistant to colistin revealed by three susceptibility testing methods.

Published in:

2017

By:

Jayol, Aurélie;
Saly, Marion;
Nordmann, Patrice;
Ménard, Armelle;
Poirel, Laurent;
Dubois, Véronique

Publication type:

journal article

2125. Staphylococcus Species Identification by Fourier Transform Infrared (FTIR) Spectroscopic Techniques: A Cross-Lab Study.

Published in:

Open Forum Infectious Diseases, 2019, v. 6, p. S720, doi. 10.1093/ofid/ofz360.1805

By:

Tsutsumi, Tamao;
Shah, Alok;
Lam, Lisa M T;
Schlebusch, Sanmarie;
Krueger, Annika;
Frazer, Ian;
Hugenholtz, Phil;
Soyer, H Peter;
Morrison, Mark;
Hill, Michelle;
Sedman, Jacqueline;
Ismail, Ashraf

Publication type:

Article

Whole genome sequencing reveals possible host species adaptation of Streptococcusdysgalactiae.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-96710-z

By:

Porcellato, Davide;
Smistad, Marit;
Skeie, Siv Borghild;
Jørgensen, Hannah Joan;
Austbø, Lars;
Oppegaard, Oddvar

Publication type:

Article

Metagenomic approaches reveal differences in genetic diversity and relative abundance of nitrifying bacteria and archaea in contrasting soils.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-95100-9

By:

Clark, Ian M.;
Hughes, David J.;
Fu, Qingling;
Abadie, Maïder;
Hirsch, Penny R.

Publication type:

Article

Genomic evolution of antimicrobial resistance in Escherichia coli.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-93970-7

By:

Leekitcharoenphon, Pimlapas;
Johansson, Markus Hans Kristofer;
Munk, Patrick;
Malorny, Burkhard;
Skarżyńska, Magdalena;
Wadepohl, Katharina;
Moyano, Gabriel;
Hesp, Ayla;
Veldman, Kees T.;
Bossers, Alex;
EFFORT Consortium;
Graveland, Haitske;
van Essen, Alieda;
Battisti, Antonio;
Caprioli, Andrea;
Blaha, Thomas;
Hald, Tine;
Daskalov, Hristo;
Saatkamp, Helmut W.;
Stärk, Katharina D. C.

Publication type:

Article

Genetic Diversity and Molecular Phylogeny of Cyanobacteria from Sri Lanka Based on 16S rRNA Gene.

Published in:

Environmental Engineering Research, 2014, v. 19, n. 4, p. 317, doi. 10.4491/eer.2014.035

By:

Wanigatunge, R. P.;
Magana-Arachchi, D. N.;
Chandrasekharan, N. V.;
Kulasooriya, S. A.

Publication type:

Article