Works matching DE "ARCHAEBACTERIAL genomes"

Results: 25

Distribution of Prokaryotic Abundance and Microbial Nutrient Cycling Across a High-Alpine Altitudinal Gradient in the Austrian Central Alps is Affected by Vegetation, Temperature, and Soil Nutrients.

Published in:

Microbial Ecology, 2016, v. 72, n. 3, p. 704, doi. 10.1007/s00248-016-0803-z

By:

Hofmann, Katrin;
Lamprecht, Andrea;
Pauli, Harald;
Illmer, Paul

Publication type:

Article

Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29<sup>T</sup> isolated from salt-fermented food.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0047-4

By:

In-Tae Cha;
Mi-Hwa Lee;
Byung-Yong Kim;
Yong-Joon Cho;
Dae-Won Kim;
Kyung June Yim;
Hye Seon Song;
Myung-Ji Seo;
Jin-Kyu Rhee;
Jong-Soon Choi;
Hak-Jong Choi;
Changmann Yoon;
Seong Woon Roh;
Young-Do Nam

Publication type:

Article

Complete genome sequence of Ilumatobacter coccineum YM16-304.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 430, doi. 10.4056/sigs.4007734

By:

Fujinami, Shun;
Takarada, Hiromi;
Kasai, Hiroaki;
Sekine, Mitsuo;
Omata, Seiha;
Harada, Takeshi;
Fukai, Rieko;
Hosoyama, Akira;
Horikawa, Hiroshi;
Kato, Yumiko;
Nakazawa, Hidekazu;
Fujita, Nobuyuki

Publication type:

Article

Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 561, doi. 10.4056/sigs.4638348

By:

Garrity, George;
Banfield, Jill;
Eisen, Jonathan;
Lelie, Niels;
McMahon, Trina;
Rusch, Doug;
DeLong, Edward;
Moran, Mary;
Currie, Cameron;
Furhman, Jed;
Hallam, Steve;
Hugenholtz, Phil;
Moran, Nancy;
Nelson, Karen;
Roberts, Richard;
Stepanauskas, Ramunas

Publication type:

Article

Asgard archaea are the closest prokaryotic relatives of eukaryotes.

Published in:

PLoS Genetics, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pgen.1007080

By:

Spang, Anja;
Eme, Laura;
Saw, Jimmy H.;
Caceres, Eva F.;
Zaremba-Niedzwiedzka, Katarzyna;
Lombard, Jonathan;
Guy, Lionel;
Ettema, Thijs J. G.

Publication type:

Article

Asgard archaea do not close the debate about the universal tree of life topology.

Published in:

PLoS Genetics, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pgen.1007215

By:

Da Cunha, Violette;
Gaia, Morgan;
Nasir, Arshan;
Forterre, Patrick

Publication type:

Article

A Tight Link between Orthologs and Bidirectional Best Hits in Bacterial and Archaeal Genomes.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 12, p. 1286, doi. 10.1093/gbe/evs100

By:

Wolf, Yuri I.;
Koonin, Eugene V.

Publication type:

Article

An Evolutionary Network of Genes Present in the Eukaryote Common Ancestor Polls Genomes on Eukaryotic and Mitochondrial Origin.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 466, doi. 10.1093/gbe/evs018

By:

Thiergart, Thorsten;
Landan, Giddy;
Schenk, Marc;
Dagan, Tal;
Martin, William F.

Publication type:

Article

Is the whole greater than the sum of its parts? De novo assembly strategies for bacterial genomes based on paired-end sequencing.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1859-8

By:

Ting-Wen Chen;
Ruei-Chi Gan;
Yi-Feng Chang;
Wei-Chao Liao;
Wu, Timothy H.;
Chi-Ching Lee;
Po-Jung Huang;
Cheng-Yang Lee;
Chen, Yi-Ywan M.;
Cheng-Hsun Chiu;
Tang, Petrus

Publication type:

Article

Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-485

By:

Yelton, Alexis P.;
Comolli, Luis R.;
Justice, Nicholas B.;
Castelle, Cindy;
Denef, Vincent J.;
Thomas, Brian C.;
Banfield, Jillian F.

Publication type:

Article

Target DNA recognition and cleavage by a reconstituted Type I-G CRISPR-Cas immune effector complex.

Published in:

Extremophiles, 2017, v. 21, n. 1, p. 95, doi. 10.1007/s00792-016-0871-5

By:

Majumdar, Sonali;
Ligon, Marianne;
Skinner, William;
Terns, Rebecca;
Terns, Michael

Publication type:

Article

Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee.

Published in:

Archives of Virology, 2017, v. 162, n. 4, p. 1153, doi. 10.1007/s00705-016-3173-4

By:

Adriaenssens, Evelien;
Krupovic, Mart;
Knezevic, Petar;
Ackermann, Hans-Wolfgang;
Barylski, Jakub;
Brister, J.;
Clokie, Martha;
Duffy, Siobain;
Dutilh, Bas;
Edwards, Robert;
Enault, Francois;
Jang, Ho;
Klumpp, Jochen;
Kropinski, Andrew;
Lavigne, Rob;
Poranen, Minna;
Prangishvili, David;
Rumnieks, Janis;
Sullivan, Matthew;
Wittmann, Johannes

Publication type:

Article

Community dynamics of prokaryotic and eukaryotic microbes in an estuary reservoir.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep06966

By:

Zhen Sun;
Guoping Li;
Chengwei Wang;
Yuhang Jing;
Yiping Zhu;
Shumin Zhang;
Yan Liu

Publication type:

Article

Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11433-0

By:

Kazlauskas, Darius;
Varsani, Arvind;
Koonin, Eugene V.;
Krupovic, Mart

Publication type:

Article

Genome reduction as the dominant mode of evolution.

Published in:

BioEssays, 2013, v. 35, n. 9, p. 829, doi. 10.1002/bies.201300037

By:

Wolf, Yuri I.;
Koonin, Eugene V.

Publication type:

Article

Deep‐sea hydrothermal vent metagenome‐assembled genomes provide insight into the phylum Nanoarchaeota.

Published in:

Environmental Microbiology Reports, 2019, v. 11, n. 2, p. 262, doi. 10.1111/1758-2229.12740

By:

St. John, Emily;
Flores, Gilberto E.;
Meneghin, Jennifer;
Reysenbach, Anna‐Louise

Publication type:

Article

ImproveAssembly - Tool for identifying new gene products and improving genome assembly.

Published in:

PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0206000

By:

Veras, Adonney Allan de Oliveira;
Merlin, Bruno;
de Sá, Pablo Henrique Caracciolo Gomes

Publication type:

Article

Identification and Characterization of Geranylgeraniol Kinase and Geranylgeranyl Phosphate Kinase from the Archaebacterium Sulfolobus acidocaldariu1.

Published in:

Journal of Biochemistry, 1996, v. 119, n. 3, p. 541, doi. 10.1093/oxfordjournals.jbchem.a021275

By:

Ohnuma, Shin-ichi;
Watanabe, Masatada;
Nishino, Tokuzo

Publication type:

Article

Accurate and universal delineation of prokaryotic species.

Published in:

Nature Methods, 2013, v. 10, n. 9, p. 881, doi. 10.1038/nmeth.2575

By:

Mende, Daniel R;
Sunagawa, Shinichi;
Zeller, Georg;
Bork, Peer

Publication type:

Article

Polar front associated variation in prokaryotic community structure in Arctic shelf seafloor.

Published in:

Frontiers in Microbiology, 2015, v. 5, p. 1, doi. 10.3389/fmicb.2015.00017

By:

Tan T. Nguyen;
Landfald, Bjarne

Publication type:

Article

CoLoRMap: Correcting Long Reads by Mapping short reads.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i545, doi. 10.1093/bioinformatics/btw463

By:

Haghshenas, Ehsan;
Hach, Faraz;
Sahinalp, S. Cenk;
Chauve, Cedric

Publication type:

Article

ISQuest: finding insertion sequences in prokaryotic sequence fragment data.

Published in:

Bioinformatics, 2015, v. 31, n. 21, p. 3406, doi. 10.1093/bioinformatics/btv388

By:

Biswas, Abhishek;
Gauthier, David T.;
Ranjan, Desh;
Zubair, Mohammad

Publication type:

Article

Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park.

Published in:

Biology Direct, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1745-6150-8-9

By:

Podar, Mircea;
Makarova, Kira S.;
Graham, David E.;
Wolf, Yuri I.;
Koonin, Eugene V.;
Reysenbach, Anna-Louise

Publication type:

Article

The CRISPR/Cas9 system: Their delivery, in vivo and ex vivo applications and clinical development by startups.

Published in:

Biotechnology Progress, 2017, v. 33, n. 4, p. 1035, doi. 10.1002/btpr.2484

By:

Song, Minjung

Publication type:

Article

Structure of the archaeal community in the Black Sea photic zone.

Published in:

Microbiology (00262617), 2015, v. 84, n. 4, p. 570, doi. 10.1134/S0026261715040128

By:

Merkel, A.;
Korneeva, V.;
Tarnovetskii, I.;
Bryukhanov, A.;
Chasovnikov, V.;
Taranov, E.;
Toshchakov, S.;
Pimenov, N.

Publication type:

Article