Works matching DE "ALTERNATIVE RNA splicing"

Results: 2444

Antisense-mediated regulation of exon usage in the elastic spring region of Titin modulates sarcomere function Open Access.

Published in:

Cardiovascular Research, 2025, v. 121, n. 4, p. 629, doi. 10.1093/cvr/cvaf037

By:

Celik, Selvi;
Hyrefelt, Ludvig;
Czuba, Tomasz;
Li, Yuan;
Assis, Juliana;
Martinez, Julia;
Johansson, Markus;
André, Oscar;
Synnergren, Jane;
Sandstedt, Joakim;
Nordenfelt, Pontus;
Vukusic, Kristina;
Smith, J Gustav;
Gidlöf, Olof

Publication type:

Article

Defects in mRNA splicing and implications for infertility: a comprehensive review and in silico analysis.

Published in:

Human Reproduction Update, 2025, v. 31, n. 3, p. 218, doi. 10.1093/humupd/dmae037

By:

Li, Kuokuo;
Chen, Yuge;
Sheng, Yuying;
Tang, Dongdong;
Cao, Yunxia;
He, Xiaojin

Publication type:

Article

Assessment of molecular and morphological dynamics during long-time in vitro cultivation of cryopreserved human ovarian tissue: risk of genetic alterations.

Published in:

Frontiers in Endocrinology, 2025, p. 1, doi. 10.3389/fendo.2024.1463614

By:

Wang, Wanxue;
Todorov, Plamen;
Isachenko, Evgenia;
Rahimi, Gohar;
Merzenich, Markus;
Mallmann-Gottschalk, Nina;
Zhou, Yang;
Yao, Jilong;
Li, Xuemei;
Isachenko, Volodimir

Publication type:

Article

A cell type-specific expression atlas of small and total RNA in the heart after myocardial infarction.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05061-1

By:

Kumar Maji, Ranjan;
Fischer, Ariane;
Rogg, Eva-Maria;
Möller, Melanie;
Gasparoni, Gilles;
Simon, Martin;
Dimmeler, Stefanie;
Schulz, Marcel H.

Publication type:

Article

Author Correction: The pan-cancer lncRNA PLANE regulates an alternative splicing program to promote cancer pathogenesis.

Published in:

2025

By:

Teng, Liu;
Feng, Yu Chen;
Guo, Su Tang;
Wang, Pei Lin;
Qi, Teng Fei;
Yue, Yi Meng;
Wang, Shi Xing;
Zhang, Sheng Nan;
Tang, Cai Xia;
La, Ting;
Zhang, Yuan Yuan;
Zhao, Xiao Hong;
Gao, Jin Nan;
Wei, Li Yuan;
Zhang, Didi;
Wang, Jenny Y.;
Shi, Yujie;
Liu, Xiao Ying;
Li, Jin Ming;
Cao, Huixia

Publication type:

Correction Notice

Deep transcriptomics reveals cell-specific isoforms of pan-neuronal genes.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-58296-2

By:

Wolfe, Zachery;
Liska, David;
Norris, Adam

Publication type:

Article

Alternative splicing across the C. elegans nervous system.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-58293-5

By:

Weinreb, Alexis;
Varol, Erdem;
Barrett, Alec;
McWhirter, Rebecca M.;
Taylor, Seth R.;
Courtney, Isabel;
Basavaraju, Manasa;
Poff, Abigail;
Tipps, John A.;
Collings, Becca;
Cros, Cyril;
Vidal, Berta;
Majeed, Maryam;
Wang, Chen;
Bayer, Emily A.;
Reilly, Molly;
Yemini, Eviatar;
Sun, HaoSheng;
Hobert, Oliver;
Krishnaswamy, Smita

Publication type:

Article

Exploring perspectives of Dscam for cognitive deficits: a review of multifunction for regulating neural wiring in homeostasis.

Published in:

Frontiers in Molecular Neuroscience, 2025, p. 1, doi. 10.3389/fnmol.2025.1575348

By:

Xiong, Yinyi;
Li, Li;
Zhang, Xiaorong

Publication type:

Article

STAU1 exhibits oncogenic characteristics and modulates alternative splicing and gene expression in lung adenocarcinoma cells.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-01883-6

By:

Zhang, Ling;
Peng, Zhen;
Ding, Wei;
Wu, Haixia;
Guo, Rong;
Li, Dewei;
Niu, Ling;
Wei, Xuemei

Publication type:

Article

From Biomphalaria glabrata to Drosophila melanogaster and Anopheles gambiae : the diversity and role of FREPs and Dscams in immune response.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1579905

By:

Li, Hongyu;
Zhao, Qingzhi;
Xu, Jialu;
Li, Xianwei;
Chen, Xintong;
Zhang, Yijie;
Li, Hairun;
Zhu, Yunhuan;
Liu, Mingcheng;
Zhao, Ling;
Hua, Dingji;
Zhang, Xiaofen;
Chen, Keda

Publication type:

Article

Incomplete paralog compensation generates selective dependency on TRA2A in cancer.

Published in:

PLoS Genetics, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.pgen.1011685

By:

Lee, Amanda R.;
Tangiyan, Anna;
Singh, Isha;
Choi, Peter S.

Publication type:

Article

Investigation of the Functional Role of the Conserved Sequence at the 5'-End of the Fourth Intron of the mod(mdg4) Gene in Trans-Splicing in Drosophila melanogaster.

Published in:

Doklady Biochemistry & Biophysics, 2025, v. 521, n. 1, p. 169, doi. 10.1134/S1607672924601410

By:

Soldatova, Iu. V.;
Beginyazova, O.;
Georgiev, P. G.;
Tikhonov, M. V.

Publication type:

Article

An Investigation of the Conservatism of Sequences Defining trans-Splicing in the mod(mdg4) Locus across Drosophila and Silkworm Species.

Published in:

Doklady Biochemistry & Biophysics, 2025, v. 520, n. 1, p. 144, doi. 10.1134/S1607672924601021

By:

Beginyazova, O.;
Soldatova, I. V.;
Georgiev, P. G.;
Tikhonov, M. V.

Publication type:

Article

LSM2 drives glioma progression through alternative splicing dysregulation: a multi-omics approach to identify a potential therapeutic target.

Published in:

Frontiers in Oncology, 2025, p. 1, doi. 10.3389/fonc.2025.1521608

By:

Yang, Cao;
Ge, Chang;
Zhang, Wenjie;
Xu, Jingxuan

Publication type:

Article

Identification of Gene Expression and Splicing QTLs in Porcine Muscle Associated with Meat Quality Traits.

Published in:

Animals (2076-2615), 2025, v. 15, n. 9, p. 1209, doi. 10.3390/ani15091209

By:

Zhou, Meng;
Ling, Chenjin;
Xiao, Hui;
Zhang, Zhiyan

Publication type:

Article

RBFOX1 Regulates Calcium Signaling and Enhances SERCA2 Translation.

Published in:

Cells (2073-4409), 2025, v. 14, n. 9, p. 664, doi. 10.3390/cells14090664

By:

Umar, Sadiq;
Zhu, Wuqiang;
Souza-Neto, Fernando;
Bender, Ingrid;
Wu, Steven C.;
Healy, Chastity L.;
O'Connell, Timothy D.;
van Berlo, Jop H.

Publication type:

Article

Synthesis of transcriptomic studies reveals a core response to heat stress in abalone (genus Haliotis).

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11680-0

By:

Barkan, Roy;
Cooke, Ira;
Watson, Sue-Ann;
Strugnell, Jan M.

Publication type:

Article

Alternative splicing fine-tunes prey shift of Coccinellini lady beetles to non-target insect.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11641-7

By:

Tang, Xuefei;
Xia, Xinhui;
Liu, Yuqi;
Hong, Xiyao;
Huang, Yuhao;
Li, Guannan;
Liang, Yuansen;
Wang, Xueqing;
Pang, Hong;
Yang, Yuchen

Publication type:

Article

Multi-omics identify ribosome related causal genes methylation, splicing, and expression in prostate cancer.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-02584-2

By:

Wei, Chengcheng;
He, Jingke;
Li, Yunfan;
Luo, Yu;
Song, Liangdong;
Han, Kun;
Zhang, Jindong;
Su, Shuai;
Wang, Delin

Publication type:

Article

SF3a1: A Novel Potential Tumor Biomarker or Therapeutic Target.

Published in:

Journal of Cancer, 2025, v. 16, n. 7, p. 2353, doi. 10.7150/jca.103209

By:

Xueqian Shuai;
Yaoqi Sun;
Shupeng Liu;
Zhongping Cheng

Publication type:

Article

Bioinformatics analysis across pan-cancer and experimental validation in hepatocellular carcinoma revealed the oncogenic role of SF3B6.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1516534

By:

Tu, Linshuang;
Luo, Jiefu;
Yin, Ya;
Yu, Huihong

Publication type:

Article

Hormonal and transcriptomic regulation of drought adaptation in barley roots and leaves.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-01590-2

By:

Collin, Anna;
Pacwa-Plociniczak, Magdalena;
Plociniczak, Tomasz;
Novak, Ôndrej;
Marzec, Marek;
Guo, Wenbin;
Simpson, Craig G.;
Daszkowska-Golec, Agata

Publication type:

Article

Alternative Splicing of BnABF4L Mediates Response to Abiotic Stresses in Rapeseed (Brassica napus L.).

Published in:

Biotechnology for Biofuels & Bioproducts, 2025, v. 18, n. 1, p. 1, doi. 10.1186/s13068-025-02645-2

By:

Zhu, Ruijia;
Yue, Chu;
Wu, Shifan;
Wu, Mingting;
Xu, Ziyue;
Liu, Xiaoqun;
Wang, Rui;
Wang, Maolin

Publication type:

Article

Expression and prognostic value of estrogen-related receptor β alternative splicing isoforms in esophageal squamous cell carcinoma.

Published in:

European Journal of Medical Research, 2025, v. 30, n. 1, p. 1, doi. 10.1186/s40001-025-02638-9

By:

Jiang, Kai-Yuan;
Wan, Jia-Xin;
Li, Hong-Yun;
Chen, Wei-Yang;
Shen, Chun-Mei;
Guo, Ke-Xuan;
Zheng, Xiang-Yun;
Wen, Hong-Ying;
Tian, Dong

Publication type:

Article

Retroelement co-option disrupts the cancer transcriptional programme.

Published in:

Genome Medicine, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13073-025-01479-9

By:

Loong, Jane;
Thompson, Rachael;
Hall, Callum;
Doglio, Laura;
Pape, Judith;
Plowman, Tobias;
Kassiotis, George

Publication type:

Article

Comprehensive visceral transcriptome profiling of three pig breeds along altitudinal gradients in Yunnan.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-05070-0

By:

Huo, Jinlong;
Liu, Zhipeng;
Zhang, Xia;
Li, Changyao;
Xiang, Decai;
Fu, Guowen;
Lin, Wan;
Wu, Lingxiang;
Gong, Shaorong;
Zhao, Jiading;
Wang, Zhen;
Wang, Xiaohong;
Xiao, Zhiping;
Hao, Fanfan;
Ren, Yue;
Sun, Yu H.;
Zhao, Guiying

Publication type:

Article

RBM39 shapes innate immunity by controlling the expression of key factors of the interferon response.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1568056

By:

Li, Teng-Feng;
Rothhaar, Paul;
Lang, Arthur;
Grünvogel, Oliver;
Colasanti, Ombretta;
Ugarte, Santa Mariela Olivera;
Traut, Jannik;
Piras, Antonio;
Acosta-Rivero, Nelson;
Gonçalves Magalhães, Vladimir;
Springer, Emely;
Betz, Andreas;
Huang, Hao-En;
Park, Jeongbin;
Qiu, Ruiyue;
Gnouamozi, Gnimah Eva;
Mehnert, Ann-Kathrin;
Thi, Viet Loan Dao;
Urban, Stephan;
Muckenthaler, Martina

Publication type:

Article

A tale of two parasites: a glimpse into the RNA methylome of patient-derived Plasmodium falciparum and Plasmodium vivax isolates.

Published in:

Malaria Journal, 2025, v. 24, n. 1, p. 1, doi. 10.1186/s12936-025-05376-9

By:

Roy, Priyanka;
Gujarati, Sukriti;
Gupta, Pallavi;
Gupta, Ishaan;
Mahapatra, Tanmaya;
Gupta, Dinesh;
Kochar, Sanjay Kumar;
Kochar, Dhanpat Kumar;
Das, Ashis

Publication type:

Article

Differential Recruitment of Pre-mRNA Splicing Factors to Alternatively Spliced Transcripts In Vivo.

Published in:

PLoS Biology, 2005, v. 3, n. 10, p. 1, doi. 10.1371/journal.pbio.0030374

By:

Mabon, Stephen A;
Misteli, Tom

Publication type:

Article

Author Index Volume 21 (2023).

Published in:: Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 6, p. 1, doi. 10.1142/S0219720023990019
Publication type:: Article

Multi-omics data analysis reveals the biological implications of alternative splicing events in lung adenocarcinoma.

Published in:

Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 4, p. 1, doi. 10.1142/S0219720023500208

By:

Hu, Fuyan;
Chen, Bifeng;
Wang, Qing;
Yang, Zhiyuan;
Chu, Man

Publication type:

Article

DeepBtoD: Improved RNA-binding proteins prediction via integrated deep learning.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 4, p. 1, doi. 10.1142/S0219720022500068

By:

Du, XiuQuan;
Zhao, XiuJuan;
Zhang, YanPing

Publication type:

Article

Histone modifications influence skipped exons inclusion.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 1, p. -1, doi. 10.1142/S0219720017500032

By:

Hou, Yue;
Huang, Huan;
Hu, Wenqiao;
Liu, Hongde;
Sun, Xiao

Publication type:

Article

Adenine base-editing-mediated exon skipping induces gene knockout in cultured pig cells.

Published in:

Biotechnology Letters, 2022, v. 44, n. 1, p. 59, doi. 10.1007/s10529-021-03214-x

By:

Zhu, Xiang-xing;
Pan, Jia-sheng;
Lin, Tao;
Yang, Ye-cheng;
Huang, Qiu-yan;
Yang, Shuai-peng;
Qu, Zi-xiao;
Lin, Zi-sheng;
Wen, Jian-cong;
Yan, Ai-fen;
Feng, Juan;
Liu, Lian;
Zhang, Xiao-li;
Lu, Jia-hong;
Tang, Dong-sheng

Publication type:

Article

SMRT and Illumina RNA sequencing reveal the complexity of terpenoid biosynthesis in Zanthoxylum armatum.

Published in:

Tree Physiology, 2022, v. 42, n. 3, p. 664, doi. 10.1093/treephys/tpab114

By:

Liu, Xiaomeng;
Tang, Ning;
Xu, Feng;
Chen, Zexiong;
Zhang, Xian;
Ye, Jiabao;
Liao, Yongling;
Zhang, Weiwei;
Kim, Soo-Un;
Wu, Peiyin;
Cao, Zhengyan

Publication type:

Article

Regulation of a truncated isoform of AMP-activated protein kinase α (AMPKα) in response to hypoxia in the muscle of Pacific oyster Crassostrea gigas.

Published in:

Journal of Comparative Physiology B: Biochemical, Systemic & Environmental Physiology, 2013, v. 183, n. 5, p. 597, doi. 10.1007/s00360-013-0743-6

By:

Guévélou, Eric;
Huvet, Arnaud;
Sussarellu, Rossana;
Milan, Massimo;
Guo, Ximing;
Li, Li;
Zhang, Guofan;
Quillien, Virgile;
Daniel, Jean-Yves;
Quéré, Claudie;
Boudry, Pierre;
Corporeau, Charlotte

Publication type:

Article

An update on transcriptional and post-translational regulation of brain voltage-gated sodium channels.

Published in:

Amino Acids, 2016, v. 48, n. 3, p. 641, doi. 10.1007/s00726-015-2122-y

By:

Onwuli, Donatus;
Beltran-Alvarez, Pedro

Publication type:

Article

The potential oncogenic effect of tissue-specific expression of JC polyoma T antigen in digestive epithelial cells.

Published in:

Transgenic Research, 2023, v. 32, n. 4, p. 305, doi. 10.1007/s11248-023-00352-y

By:

Zheng, Hua-chuan;
Xue, Hang;
Sun, Hong-zhi;
Yun, Wen-jing;
Cui, Zheng-guo

Publication type:

Article

Expression of CD44 Isoforms in Tumor Samples and Cell Lines of Human Colorectal Cancer.

Published in:

Bulletin of Experimental Biology & Medicine, 2022, v. 173, n. 1, p. 155, doi. 10.1007/s10517-022-05512-4

By:

Novosad, V. O.;
Polikanova, I. S.;
Tonevitsky, E. A.;
Maltseva, D. V.

Publication type:

Article

β-Arrestin2 promotes docetaxel resistance of castration-resistant prostate cancer via promoting hnRNP A1-mediated PKM2 alternative splicing.

Published in:

Discover Oncology, 2023, v. 14, n. 1, p. 1, doi. 10.1007/s12672-023-00740-0

By:

Zhou, Yuhao;
Li, Fei;
Zou, Bangyu;
Zhou, Xiaofeng;
Luo, Lianmin;
Dong, Sicheng;
He, Zhiqing;
Zhang, Zhixiong;
Liao, Liqiong;
Liu, Hongxing;
Cai, Chao;
Gu, Di;
Duan, Xiaolu

Publication type:

Article

Dissection of TAF1 neuronal splicing and implications for neurodegeneration in X-linked dystonia-parkinsonism.

Published in:

Brain Communications, 2021, v. 3, n. 4, p. 1, doi. 10.1093/braincomms/fcab253

By:

Capponi, Simona;
Stöffler, Nadja;
Penney, Ellen B.;
Grütz, Karen;
Nizamuddin, Sheikh;
Vermunt, Marit W.;
Castelijns, Bas;
Fernandez-Cerado, Cara;
Legarda, G. Paul;
Velasco-Andrada, M. Salvie;
Muñoz, Edwin L.;
Ang, Mark A.;
Diesta, Cid Czarina E.;
Creyghton, Menno P.;
Klein, Christine;
Bragg, D. Cristopher;
De Rijk, Peter;
Timmers, H. T. Marc

Publication type:

Article

Overexpression and alternative splicing of the glutamate‐gated chloride channel are associated with emamectin benzoate resistance in the rice stem borer, Chilo suppressalis Walker (Lepidoptera: Crambidae).

Published in:

Pest Management Science, 2025, v. 81, n. 4, p. 2114, doi. 10.1002/ps.8610

By:

Wang, Shuai;
Qiao, Song‐Tao;
Guo, Fang‐Rui;
Xie, Yuan;
Liu, Chong;
Liu, Jin‐wei;
Zhao, Si‐Qi;
Zhou, Li‐Qi;
Yang, Feng‐Xia;
Wu, Shun‐Fan;
Bass, Chris;
Gao, Cong‐Fen

Publication type:

Article

Alternative splicing of the conserved drug‐resistant orthologue FpNcb2 is associated with its nuclear accumulation of products and full virulence of Fusarium pseudograminearum.

Published in:

Pest Management Science, 2024, v. 80, n. 10, p. 4993, doi. 10.1002/ps.8219

By:

Zhao, Peiyi;
Peng, Mengya;
Zhang, Shiyu;
Dong, Zaifang;
Liu, Min;
Xing, Xiaoping;
Shi, Yan;
Li, Honglian;
Chen, Linlin

Publication type:

Article

Identification and functional analysis of the female determiner gene in the bean bug, Riptortus pedestris.

Published in:

Pest Management Science, 2024, v. 80, n. 3, p. 1240, doi. 10.1002/ps.7853

By:

Wang, Haiqiang;
Ying, Jinjun;
Mao, Zeping;
Wang, Biyun;
Ye, Zhuangxin;
Chen, Youyuan;
Chen, Jianping;
Zhang, Chuanxi;
Li, Junmin;
Zhuo, Jichong

Publication type:

Article

Functional diversity of voltage‐gated sodium channel in Drosophila suzukii (Matsumura).

Published in:

Pest Management Science, 2024, v. 80, n. 2, p. 592, doi. 10.1002/ps.7786

By:

Yuan, Linlin;
Zhang, Kun;
Wang, Zhenglei;
Xian, Limin;
Liu, Kaiyang;
Wu, Shaoying

Publication type:

Article

The cys‐loop ligand‐gated ion channel gene superfamilies of the cockroaches Blattella germanica and Periplaneta americana.

Published in:

Pest Management Science, 2021, v. 77, n. 8, p. 3787, doi. 10.1002/ps.6245

By:

Jones, Andrew K;
Goven, Delphine;
Froger, Josy‐Anne;
Bantz, Alexandre;
Raymond, Valerie

Publication type:

Article

Molecular characterization and functional expression of voltage‐gated sodium channel variants in Apolygus lucorum (Meyer‐Dür).

Published in:

Pest Management Science, 2020, v. 76, n. 6, p. 2095, doi. 10.1002/ps.5748

By:

Zhang, Kun;
Chen, Mengli;
Wang, Hao;
Duan, Wenbo;
Wang, Qiang;
Li, Fen;
Deng, Denghui;
Bandason, Elizabeth;
Wu, Shaoying

Publication type:

Article

Alternative splicing and expression analysis of HSF1 in diapause pupal brains in the cotton bollworm, Helicoverpa armigera.

Published in:

Pest Management Science, 2019, v. 75, n. 5, p. 1258, doi. 10.1002/ps.5238

By:

Chen, Wei;
Li, Yu‐Juan;
Wang, Hui;
Geng, Shao‐Lei;
Song, Zhe;
Cao, Jian‐Yun

Publication type:

Article

Molecular characterisation of a sodium channel gene and identification of a Phe1538 to Ile mutation in citrus red mite, Panonychus citri.

Published in:

Pest Management Science, 2015, v. 71, n. 2, p. 266, doi. 10.1002/ps.3802

By:

Ding, Tian‐Bo;
Zhong, Rui;
Jiang, Xuan‐Zhao;
Liao, Chong‐Yu;
Xia, Wen‐Kai;
Liu, Bin;
Dou, Wei;
Wang, Jin‐Jun

Publication type:

Article

Glucocorticoids regulate the expression of Srsf1 through Hdac4/Foxc1 axis to induce apoptosis of osteoblasts.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-07989-x

By:

Luo, Hong;
Wang, Tao;
Xie, Zhihong;
Li, Fanchao;
Yang, Chengyou;
Dong, Wentao;
Wu, Jianhua;
Wang, Qiang;
Xu, Fengyang;
Liu, Jiong;
Zhang, Fei;
Peng, Wuxun

Publication type:

Article