Works matching DE "ALTERNATIVE RNA splicing"

Results: 2460

Functional, microarray and bioinformatics analyses of human papillomavirus E7-specific pathways in cervical carcinogenesis.

Published in:

European Journal of Gynaecological Oncology, 2025, v. 46, n. 5, p. 8, doi. 10.22514/ejgo.2025.061

By:

Nan Qi;
Takeo Minaguchi;
Kaoru Fujieda;
Asami Suto;
Hiroya Itagaki;
Yuri Tenjimbayashi;
Ayumi Shikama;
Nobutaka Tasaka;
Azusa Akiyama;
Sari Nakao;
Toyomi Satoh

Publication type:

Article

Epigenetic Regulation and Therapeutic Targeting of Alternative Splicing Dysregulation in Cancer.

Published in:

Pharmaceuticals (14248247), 2025, v. 18, n. 5, p. 713, doi. 10.3390/ph18050713

By:

Lei, Yan;
Lai, Maode

Publication type:

Article

DNA Methylation and Alternative Splicing Safeguard Genome and Transcriptome After a Retrotransposition Burst in Arabidopsis thaliana.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4816, doi. 10.3390/ijms26104816

By:

Merkulov, Pavel;
Latypova, Anastasiia;
Tiurin, Kirill;
Serganova, Melania;
Kirov, Ilya

Publication type:

Article

Identification and Functional Analysis of a Key Gene in the CHH Gene Family for Glucose Metabolism in the Pacific White Shrimp Litopenaeus vannamei.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 10, p. 4612, doi. 10.3390/ijms26104612

By:

Zhang, Chengyi;
Zhang, Xiaojun;
Si, Shuqing;
Sun, Mingzhe;
Li, Aixin;
Yuan, Jianbo;
Li, Fuhua

Publication type:

Article

Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 12, p. 1434, doi. 10.1038/nsmb.2699

By:

Lovci, Michael T;
Ghanem, Dana;
Marr, Henry;
Arnold, Justin;
Gee, Sherry;
Parra, Marilyn;
Liang, Tiffany Y;
Stark, Thomas J;
Gehman, Lauren T;
Hoon, Shawn;
Massirer, Katlin B;
Pratt, Gabriel A;
Black, Douglas L;
Gray, Joe W;
Conboy, John G;
Yeo, Gene W

Publication type:

Article

Large-scale mapping of branchpoints in human pre-mRNA transcripts in vivo.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 7, p. 719, doi. 10.1038/nsmb.2327

By:

Taggart, Allison J;
DeSimone, Alec M;
Shih, Janice S;
Filloux, Madeleine E;
Fairbrother, William G

Publication type:

Article

Alternative Splicing in Glioblastoma and its Clinical Implication in Outcome Prediction.

Published in:

Neurology India, 2024, v. 72, n. 4, p. 846, doi. 10.4103/neurol-india.ni_1219_21

By:

Zheng, Ping;
Zhang, Xiaoxue;
Ren, Dabin;
Bai, Qingke

Publication type:

Article

Novel deleterious splicing variant in HFM1 causes gametogenesis defect and recurrent implantation failure: concerning the risk of chromosomal abnormalities in embryos.

Published in:

Journal of Assisted Reproduction & Genetics, 2023, v. 40, n. 7, p. 1689, doi. 10.1007/s10815-023-02761-8

By:

Tang, Fei;
Gao, Yang;
Li, KuoKuo;
Tang, DongDong;
Hao, Yan;
Lv, Mingrong;
Wu, Huan;
Cheng, Huiru;
Fei, Jia;
Jin, Zhiping;
Wang, Chao;
Xu, Yuping;
Wei, Zhaolian;
Zhou, Ping;
Zhang, Zhiguo;
He, Xiaojin;
Cao, Yunxia

Publication type:

Article

The effect of LARP7 on gene expression during osteogenesis.

Published in:

Molecular Biology Reports, 2025, v. 52, n. 1, p. 1, doi. 10.1007/s11033-024-10216-1

By:

Ozisin, M. Samil;
Imren, Gozde;
Aydin, Busra;
Karaosmanoglu, Beren;
Taskiran, Ekim Z.

Publication type:

Article

Mass-spectrometry-based quantitative proteomic analysis reveals that methylglyoxal and carnosine influence oxidative stress and RNA-processing associated proteins in renal proximal tubule epithelial cells.

Published in:

Molecular Biology Reports, 2025, v. 52, n. 1, p. 1, doi. 10.1007/s11033-024-10190-8

By:

Liu, Lei;
Zhang, Shiqi;
Xu, Juan;
Cao, Yadi;
Cui, Di;
Liu, Chao;
Shen, Bing;
Wu, Yonggui;
Zhang, Qiu

Publication type:

Article

Full-length transcriptome assembly of black amur bream (Megalobrama terminalis) as a reference resource.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-10056-z

By:

Liu, Kai;
Xie, Nan

Publication type:

Article

Decoding the genetic influence of CT60 non-coding polymorphism in CTLA-4 gene and sCTLA-4 biomarker with rheumatoid arthritis in the Indian population.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09949-w

By:

Shamala, V.;
Asha Devi, S.

Publication type:

Article

Ex vivo disease modelling of Rett syndrome: the transcriptomic and metabolomic implications of direct neuronal conversion.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09915-6

By:

Karaosmanoglu, Beren;
Imren, Gozde;
Ozisin, M. Samil;
Reçber, Tuba;
Simsek Kiper, Pelin Ozlem;
Haliloglu, Goknur;
Alikaşifoğlu, Mehmet;
Nemutlu, Emirhan;
Taskiran, Ekim Z.;
Utine, Gulen Eda

Publication type:

Article

Transcriptome profiling of longissimus dorsi during different prenatal stages to identify genes involved in intramuscular fat deposition in lean and obese pig breeds.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-023-09088-8

By:

Chen, Jun Feng;
Wang, Jing;
Chai, Jin;
Jin, Wei;
Ren, Qiao Ling;
Ma, Qiang;
Lu, Qing Xia;
Sun, Jia Jie;
Mo, De Lin;
Zhang, Jia Qing;
Xing, Bao Song

Publication type:

Article

LIGHT regulated gene expression in rheumatoid synovial fibroblasts.

Published in:

Molecular Biology Reports, 2024, v. 51, n. 1, p. 1, doi. 10.1007/s11033-024-09311-0

By:

Fukuda, Koji;
Miura, Yasushi;
Maeda, Toshihisa;
Hayashi, Shinya;
Kikuchi, Kenichi;
Takashima, Yoshinori;
Matsumoto, Tomoyuki;
Kuroda, Ryosuke

Publication type:

Article

An overview of cdc2‐like kinase 1 (Clk1) inhibitors and their therapeutic indications.

Published in:

Medicinal Research Reviews, 2023, v. 43, n. 2, p. 343, doi. 10.1002/med.21928

By:

ElHady, Ahmed K.;
El‐Gamil, Dalia S.;
Abadi, Ashraf H.;
Abdel‐Halim, Mohammad;
Engel, Matthias

Publication type:

Article

The 5′ untranslated region of the serotonin receptor 2C pre-mRNA generates miRNAs and is expressed in non-neuronal cells.

Published in:

Experimental Brain Research, 2013, v. 230, n. 4, p. 387, doi. 10.1007/s00221-013-3458-8

By:

Zhang, Zhaiyi;
Falaleeva, Marina;
Agranat-Tamir, Lily;
Pages, Amadis;
Eyras, Eduardo;
Sperling, Joseph;
Sperling, Ruth;
Stamm, Stefan

Publication type:

Article

Musashi-2 causes cardiac hypertrophy and heart failure by inducing mitochondrial dysfunction through destabilizing Cluh and Smyd1 mRNA.

Published in:

Basic Research in Cardiology, 2023, v. 118, n. 1, p. 1, doi. 10.1007/s00395-023-01016-y

By:

Singh, Sandhya;
Gaur, Aakash;
Sharma, Rakesh Kumar;
Kumari, Renu;
Prakash, Shakti;
Kumari, Sunaina;
Chaudhary, Ayushi Devendrasingh;
Prasun, Pankaj;
Pant, Priyanka;
Hunkler, Hannah;
Thum, Thomas;
Jagavelu, Kumaravelu;
Bharati, Pragya;
Hanif, Kashif;
Chitkara, Pragya;
Kumar, Shailesh;
Mitra, Kalyan;
Gupta, Shashi Kumar

Publication type:

Article

FUS and METTL3 collaborate to regulate RNA maturation, preventing unfolded protein response and promoting gastric cancer progression.

Published in:

Clinical & Experimental Medicine, 2024, v. 25, n. 1, p. 1, doi. 10.1007/s10238-024-01525-7

By:

Liu, Dongtao;
Ding, Bo;
Liu, Gang;
Yang, Zhijuan

Publication type:

Article

The role of BUD31 in clear cell renal cell carcinoma: prognostic significance, alternative splicing, and tumor immune environment.

Published in:

Clinical & Experimental Medicine, 2024, v. 24, n. 1, p. 1, doi. 10.1007/s10238-024-01451-8

By:

Wu, Xiaoliang;
Fan, Ruixin;
Zhang, Yangjun;
Duan, Chen;
Yao, Xiangyang;
Liu, Kai;
Lin, Dongxu;
Chen, Zhong

Publication type:

Article

An update on transcriptional and post-translational regulation of brain voltage-gated sodium channels.

Published in:

Amino Acids, 2016, v. 48, n. 3, p. 641, doi. 10.1007/s00726-015-2122-y

By:

Onwuli, Donatus;
Beltran-Alvarez, Pedro

Publication type:

Article

Regulation of alternative splicing in Catharanthus roseus in response to methyl jasmonate modulation during development and stress resilience.

Published in:

Functional Plant Biology, 2025, v. 52, n. 4, p. 1, doi. 10.1071/FP25017

By:

Abulfaraj, Aala A.;
Al-Andal, Abeer

Publication type:

Article

Epigenetics and alternative splicing in cancer: old enemies, new perspectives.

Published in:

Biochemical Journal, 2024, v. 481, n. 21, p. 1497, doi. 10.1042/BCJ20240221

By:

Pandkar, Madhura R.;
Shukla, Sanjeev

Publication type:

Article

Thermoregulated transcriptomics: the molecular basis and biological significance of temperature-dependent alternative splicing.

Published in:

Biochemical Journal, 2024, v. 481, n. 15, p. 999, doi. 10.1042/bcj20230410

By:

Haltenhof, Tom;
Preußner, Marco;
Heyd, Florian

Publication type:

Article

Identification and characterization of the Doublesex gene and its mRNA isoforms in the brine shrimp Artemia franciscana.

Published in:

Biochemical Journal, 2023, v. 480, n. 5, p. 385, doi. 10.1042/BCJ20220495

By:

Wen-Tao Wu;
Lian-Ying Xu;
Zhi-Jun Yan;
Ning Bi;
Cai-Yuan Cheng;
Fan Yang;
Wei-Jun Yang;
Jin-Shu Yang

Publication type:

Article

Binding partners regulate unfolding of myosin VI to activate the molecular motor.

Published in:

Biochemical Journal, 2022, v. 479, n. 13, p. 1409, doi. 10.1042/BCJ20220025

By:

dos Santos, Ália;
Fili, Natalia;
Hari-Gupta, Yukti;
Gough, Rosemarie E.;
Lin Wang;
Martin-Fernandez, Marisa;
Aaron, Jesse;
Wait, Eric;
Teng-Leong Chew;
Toseland, Christopher P.

Publication type:

Article

Distinct interactors define the p63 transcriptional signature in epithelial development or cancer.

Published in:

Biochemical Journal, 2022, v. 479, n. 12, p. 1375, doi. 10.1042/BCJ20210737

By:

Pecorari, Rosalba;
Bernassola, Francesca;
Melino, Gerry;
Candi, Eleonora

Publication type:

Article

TSIS: an R package to infer alternative splicing isoform switches for time-series data.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3308, doi. 10.1093/bioinformatics/btx411

By:

Guo, Wenbin;
Calixto, Cristiane P. G.;
Brown, John W. S.;
Runxuan Zhang

Publication type:

Article

Integrative deep models for alternative splicing.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i274, doi. 10.1093/bioinformatics/btx268

By:

Jha, Anupama;
Gazzara, Matthew R.;
Barash, Yoseph

Publication type:

Article

ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2499, doi. 10.1093/bioinformatics/btw068

By:

Mall, Tarun;
Eckstein, John;
Norris, David;
Vora, Hiral;
Freese, Nowlan H.;
Loraine, Ann E.

Publication type:

Article

Isoform-level ribosome occupancy estimation guided by transcript abundance with Ribomap.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. 1880, doi. 10.1093/bioinformatics/btw085

By:

Hao Wang;
McManus, Joel;
Kingsford, Carl

Publication type:

Article

Analysis of differential splicing suggests different modes of short-term splicing regulation.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. i147, doi. 10.1093/bioinformatics/btw283

By:

Topa, Hande;
Honkela, Antti

Publication type:

Article

SplAdder. identification, quantification and testing of alternative splicing events from RNA-Seq data.

Published in:

Bioinformatics, 2016, v. 32, n. 12, p. 1840, doi. 10.1093/bioinformatics/btw076

By:

Kahles, André;
Cheng Soon Ong;
Yi Zhong;
Rätsch, Gunnar

Publication type:

Article

Alternative splicing and co-option of transposable elements: the case of TMPO/LAP2a and ZNF451 in mammals.

Published in:

Bioinformatics, 2015, v. 31, n. 14, p. 2257, doi. 10.1093/bioinformatics/btv132

By:

Abascal, Federico;
Tress, Michael L.;
Valencia, Alfonso

Publication type:

Article

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1660, doi. 10.1093/bioinformatics/btu077

By:

Xie, Yinlong;
Wu, Gengxiong;
Tang, Jingbo;
Luo, Ruibang;
Patterson, Jordan;
Liu, Shanlin;
Huang, Weihua;
He, Guangzhu;
Gu, Shengchang;
Li, Shengkang;
Zhou, Xin;
Lam, Tak-Wah;
Li, Yingrui;
Xu, Xun;
Wong, Gane Ka-Shu;
Wang, Jun

Publication type:

Article

Deep learning of the tissue-regulated splicing code.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i121, doi. 10.1093/bioinformatics/btu277

By:

Leung, Michael K. K.;
Xiong, Hui Yuan;
Lee, Leo J.;
Frey, Brendan J.

Publication type:

Article

Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2300, doi. 10.1093/bioinformatics/btt396

By:

LeGault, Laura H.;
Dewey, Colin N.

Publication type:

Article

Mechanistic insights into mutually exclusive splicing in dynamin 1.

Published in:

Bioinformatics, 2013, v. 29, n. 17, p. 2084, doi. 10.1093/bioinformatics/btt368

By:

Suyama, Mikita

Publication type:

Article

Intron-centric estimation of alternative splicing from RNA-seq data.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 273, doi. 10.1093/bioinformatics/bts678

By:

Pervouchine, Dmitri D.;
Knowles, David G.;
Guigó, Roderic

Publication type:

Article

AS-EAST: a functional annotation tool for putative proteins encoded by alternatively spliced transcripts.

Published in:

Bioinformatics, 2012, v. 28, n. 15, p. 2076, doi. 10.1093/bioinformatics/bts320

By:

Shionyu, Masafumi;
Takahashi, Ken-ichi;
Go, Mitiko

Publication type:

Article

JETTA: junction and exon toolkits for transcriptome analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 9, p. 1274, doi. 10.1093/bioinformatics/bts134

By:

Seok, Junhee;
Xu, Weihong;
Gao, Hong;
Davis, Ronald W.;
Xiao, Wenzhong

Publication type:

Article

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels.

Published in:

Bioinformatics, 2012, v. 28, n. 8, p. 1086, doi. 10.1093/bioinformatics/bts094

By:

Schulz, Marcel H.;
Zerbino, Daniel R.;
Vingron, Martin;
Birney, Ewan

Publication type:

Article

Signal analysis for genome-wide maps of histone modifications measured by ChIP-seq.

Published in:

Bioinformatics, 2012, v. 28, n. 8, p. 1062, doi. 10.1093/bioinformatics/bts085

By:

Beck, Dominik;
Brandl, Miriam B.;
Boelen, Lies;
Unnikrishnan, Ashwin;
Pimanda, John E.;
Wong, Jason W. H.

Publication type:

Article

Soluble FMS-like tyrosine kinase-1: An overview.

Published in:

International Journal of Medical Biochemistry, 2023, v. 6, n. 2, p. 117, doi. 10.14744/ijmb.2023.66933

By:

Selvarajan, Sathya;
Ramalingam, Jothimalar;
Venugopal, Veena

Publication type:

Article

The regulatory subunit MoB56 of PP2A phosphatase regulates pathogenicity, growth and development in a protein complex with the atypical catalytic subunit Ppg1 in the rice blast fungus Magnaporthe oryzae.

Published in:

Phytopathology Research, 2023, v. 5, n. 1, p. 1, doi. 10.1186/s42483-023-00165-1

By:

Wang, Rui-Jin;
Cui, Danrui;
Zhao, Rui;
Jin, Yujie;
Zeng, Wenhui;
Yang, Ye;
Qi, Linlu;
Xiang, Lihui;
Peng, You-Liang

Publication type:

Article

FAM136A as a Diagnostic Biomarker in Esophageal Cancer: Insights into Immune Infiltration, m6A Modification, Alternative Splicing, Cuproptosis, and the ceRNA Network.

Published in:

Advanced Biology, 2024, v. 8, n. 11, p. 1, doi. 10.1002/adbi.202400157

By:

Sun, Shaowu;
Huang, Chunyao;
Fan, Wenbo;
Wang, Zhulin;
Li, Kaiyuan;
Liu, Xu;
Wang, Zelong;
Zhao, Tianliang;
Zhang, Guoqing;
Li, Xiangnan

Publication type:

Article

IGF2BP3 prefers to regulate alternative splicing of genes associated with the progression of gastric cancer in AGS cells.

Published in:

Discover Oncology, 2025, v. 16, n. 1, p. 1, doi. 10.1007/s12672-025-01880-1

By:

Zeng, Xiangyue;
Zhang, Yu;
Shapaer, Tiannake;
Abudoukelimu, Abulajiang;
Zhao, Zeliang;
Ma, Binlin

Publication type:

Article

Unveiling the significance of cancer-testis antigens and their implications for immunotherapy in glioma.

Published in:

Discover Oncology, 2024, v. 15, n. 1, p. 1, doi. 10.1007/s12672-024-01449-4

By:

Zhuo, Shenghua;
Yang, Shuo;
Chen, Shenbo;
Ding, Yueju;
Cheng, Honglei;
Yang, Liangwang;
Wang, Kai;
Yang, Kun

Publication type:

Article

CTHRC1 modulates cell proliferation and invasion in hepatocellular carcinoma by DNA methylation.

Published in:

Discover Oncology, 2024, v. 15, n. 1, p. 1, doi. 10.1007/s12672-024-01194-8

By:

Sun, Xiangjun;
Liu, Ye;
Cheng, Changdong;
Sun, Haoyu;
Tian, Liqiang

Publication type:

Article

Mapping alternative splicing events in colorectal cancer.

Published in:

Discover Oncology, 2024, v. 15, n. 1, p. 1, doi. 10.1007/s12672-024-01149-z

By:

Zheng, Yifeng;
Zhong, Guoqiang;
Song, Qiuyu;
Zhang, Haonan;
Wang, Shanping;
Lin, Chuangzhen;
He, Chengcheng;
Li, Mingsong

Publication type:

Article