Works matching DE "ALPHA helix structure (Proteins)"

Results: 38

Towards Symmetry-Based Explanation of (Approximate) Shapes of Alpha-Helices and Beta-Sheets (and Beta-Barrels) in Protein Structure.

Published in:

Symmetry (20738994), 2012, v. 4, n. 1, p. 15, doi. 10.3390/sym4010015

By:

Nava, Jaime;
Kreinovich, Vladik

Publication type:

Article

An efficient alpha helix model and simulation framework for stationary electrostatic interaction force estimation.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-88369-3

By:

Butcher, Guy G.;
Harwin, William S.;
Jones, Chris I.

Publication type:

Article

A novel CAV derived cell-penetrating peptide efficiently delivers exogenous molecules through caveolae-mediated endocytosis.

Published in:

Veterinary Research, 2018, v. 49, p. 1, doi. 10.1186/s13567-018-0513-2

By:

Gaowei Hu;
Wenlv Zheng;
Ao Li;
Yaru Mu;
Mingyu Shi;
Tuofan Li;
Haitao Zou;
Hongxia Shao;
Aijian Qin;
Jianqiang Ye

Publication type:

Article

α-helix formation rate of oligopeptides at subzero temperatures.

Published in:

Biophysics (13492942), 2014, v. 10, p. 9, doi. 10.2142/biophysics.10.9

By:

Zhi-jie Qin;
Akio Shimizu;
Jinsong Li;
Masamichi Ikeguchi;
Masaji Shinjo;
Hiroshi Kihara

Publication type:

Article

Design and Synthesis of Oligoamide-Based Double α-Helix Mimetics.

Published in:

European Journal of Organic Chemistry, 2013, v. 2013, n. 17, p. 3433, doi. 10.1002/ejoc.201300363

By:

Kulikov, Oleg V.;
Thompson, Sam;
Xu, Hai;
Incarvito, Christopher D.;
Scott, Richard T. W.;
Saraogi, Ishu;
Nevola, Laura;
Hamilton, Andrew D.

Publication type:

Article

Tipping the Scale from Disorder to Alpha-helix: Folding of Amphiphilic Peptides in the Presence of Macroscopic and Molecular Interfaces.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.pcbi.1004328

By:

Dalgicdir, Cahit;
Globisch, Christoph;
Peter, Christine;
Sayar, Mehmet

Publication type:

Article

Evidence for the participation of an extra α-helix at β-subunit surface in the thermal stability of Co-type nitrile hydratase.

Published in:

Applied Microbiology & Biotechnology, 2018, v. 102, n. 18, p. 7891, doi. 10.1007/s00253-018-9191-2

By:

Pei, Xiaolin;
Wang, Jiapao;
Wu, Yifeng;
Zhen, Xiaoting;
Tang, Manman;
Wang, Qiuyan;
Wang, Anming

Publication type:

Article

Molecular Probing of the HPV-16 E6 Protein Alpha Helix Binding Groove with Small Molecule Inhibitors.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149845

By:

Rietz, Anne;
Petrov, Dino P.;
Bartolowits, Matthew;
DeSmet, Marsha;
Davisson, V. Jo;
Androphy, Elliot J.

Publication type:

Article

The region from phenylalanine-28 to lysine-50 of a yeast mitochondrial ATPase inhibitor (IF1) forms an α-helix in solution.

Published in:

Journal of Bioenergetics & Biomembranes, 2015, v. 47, n. 6, p. 457, doi. 10.1007/s10863-015-9627-7

By:

Sun, Li;
Nakamae, Naomi;
Ichikawa, Naoki

Publication type:

Article

A New i, i + 3 Peptide Stapling System for α-Helix Stabilization.

Published in:

Chemical Biology & Drug Design, 2013, v. 82, n. 6, p. 635, doi. 10.1111/cbdd.12231

By:

Shim, So Youn;
Kim, Young ‐ Woo;
Verdine, Gregory L.

Publication type:

Article

Prediction of DNA-binding specificity in zinc finger proteins.

Published in:

Journal of Biosciences, 2012, v. 37, n. 3, p. 483, doi. 10.1007/s12038-012-9213-7

By:

Roy, Sumedha;
Dutta, Shayoni;
Khanna, Kanika;
Singla, Shruti;
Sundar, Durai

Publication type:

Article

Computational analysis of protein-protein interfaces involving an alpha helix: insights for terphenyl-like molecules binding.

Published in:

BMC Pharmacology & Toxicology, 2013, v. 14, n. 1, p. 1, doi. 10.1186/2050-6511-14-31

By:

Isvoran, Adriana;
Craciun, Dana;
Martiny, Virginie;
Sperandio, Olivier;
Miteva, Maria A.

Publication type:

Article

Structure and applications of novel influenza HA tri-stalk protein for evaluation of HA stem-specific immunity.

Published in:

PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0204776

By:

Lu, I-Na;
Kirsteina, Anna;
Farinelle, Sophie;
Willieme, Stéphanie;
Tars, Kaspars;
Muller, Claude P.;
Kazaks, Andris

Publication type:

Article

Lipids modulate the insertion and folding of the nascent chains of alpha helical membrane proteins.

Published in:

Biochemical Society Transactions, 2018, v. 46, n. 5, p. 1355, doi. 10.1042/BST20170424

By:

Harris, Nicola J.;
Charalambous, Kalypso;
Findlay, Heather E.;
Booth, Paula J.

Publication type:

Article

Charge‐Induced Secondary Structure Transformation of Amyloid‐Derived Dipeptide Assemblies from β‐Sheet to α‐Helix.

Published in:

Angewandte Chemie, 2018, v. 130, n. 6, p. 1553, doi. 10.1002/ange.201710642

By:

Xing, Ruirui;
Yuan, Chengqian;
Li, Shukun;
Song, Jingwen;
Li, Junbai;
Yan, Xuehai

Publication type:

Article

A Bone Morphogenetic Protein (BMP)-derived Peptide Based on the Type I Receptor-binding Site Modifies Cell-type Dependent BMP Signalling.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-49758-x

By:

Tong, Zhen;
Guo, Jingxu;
Glen, Robert C.;
Morrell, Nicholas W.;
Li, Wei

Publication type:

Article

SKINK: a web server for string kernel based kink prediction in α-helices.

Published in:

2014

By:

Seifert, Tim;
Lund, Andreas;
Kneissl, Benny;
Mueller, Sabine C.;
Tautermann, Christofer S.;
Hildebrandt, Andreas

Publication type:

Product Review

A cytoplasmic helix is required for pentamer formation of the Escherichia coli MscL mechanosensitive channel.

Published in:

Journal of Biochemistry, 2015, v. 158, n. 2, p. 109, doi. 10.1093/jb/mvv019

By:

Ando, Chie;
Liu, Naili;
Yoshimura, Kenjiro

Publication type:

Article

Nanosecond T-Jump Experiment in Poly(glutamic acid): A Circular Dichroism Study.

Published in:

International Journal of Molecular Sciences, 2012, v. 13, n. 2, p. 2239, doi. 10.3390/ijms13022239

By:

Mendonça, Lucille;
Hache, François

Publication type:

Article

Waggawagga: comparative visualization of coiled-coil predictions and detection of stable single α-helices (SAH domains).

Published in:

Bioinformatics, 2015, v. 31, n. 5, p. 767, doi. 10.1093/bioinformatics/btu700

By:

Simm, Dominic;
Hatje, Klas;
Kollmar, Martin

Publication type:

Article

Blunt Snout Bream Megalobrama amblycephala Yih 1955 Interleukin-10: Characterisation, Comparative Homology Modelling and Expression.

Published in:

Asian Fisheries Science, 2016, v. 29, n. 4, p. 178, doi. 10.33997/j.afs.2016.29.4.002

By:

NGOC TUAN TRAN;
HAN LIU;
WEI-MIN WANG

Publication type:

Article

The Clinical Value of Chlamydia Phage Vp2 Protein.

Published in:

Tianjin Medical Journal, 2014, v. 42, n. 7, p. 634, doi. 10.3969/j.issn.0253-9896.2014.07.003

By:

YAO Weifeng;
LU Guiling;
XIE Yanqiu;
YU Wang;
SONG Mengmeng;
LI Shiying

Publication type:

Article

Nonlinear wave trains in three-strand α-helical protein models.

Published in:

European Physical Journal B: Condensed Matter, 2013, v. 86, n. 9, p. 1, doi. 10.1140/epjb/e2013-40467-6

By:

Tabi, C.B.;
Mimshe Fewu, J.C.;
Ekobena Fouda, H.P.;
Mohamadou, A.;
Kofané, T.C.

Publication type:

Article

Effect of Oxidation on the Emulsifying Properties of Myofibrillar Proteins.

Published in:

Food & Bioprocess Technology, 2013, v. 6, n. 7, p. 1703, doi. 10.1007/s11947-012-0823-8

By:

Sun, Weizheng;
Zhou, Feibai;
Sun, Da-Wen;
Zhao, Mouming

Publication type:

Article

Applying Unique Molecular Identifiers in Next Generation Sequencing Reveals a Constrained Viral Quasispecies Evolution under Cross-Reactive Antibody Pressure Targeting Long Alpha Helix of Hemagglutinin.

Published in:

Viruses (1999-4915), 2018, v. 10, n. 4, p. 148, doi. 10.3390/v10040148

By:

Hauck, Nastasja C.;
Kirpach, Josiane;
Kiefer, Christina;
Farinelle, Sophie;
Maucourant, Sophie;
Morris, Stephen A.;
Rosenberg, William;
He, Feng Q.;
Muller, Claude P.;
Lu, I-Na

Publication type:

Article

Amino Terminal Region of Dengue Virus NS4A Cytosolic Domain Binds to Highly Curved Liposomes.

Published in:

Viruses (1999-4915), 2015, v. 7, n. 7, p. 4119, doi. 10.3390/v7072812

By:

Yu-Fu Hung;
Koenig, Bernd W.;
Schwarten, Melanie;
Sklan, Ella H.;
Willbold, Dieter;
Hoffmann, Silke

Publication type:

Article

Secondary Structure Preferences of Mn2+ Binding Sites in Bacterial Proteins.

Published in:

Advances in Bioinformatics, 2014, p. 1, doi. 10.1155/2014/501841

By:

Khrustaleva, Tatyana Aleksandrovna

Publication type:

Article

Conformational Changes in Two Inter-Helical Loops of Mhp1 Membrane Transporter.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0133388

By:

Song, Hyun Deok;
Zhu, Fangqiang

Publication type:

Article

Alpha-Helical Destabilization of the Bcl-2-BH4-Domain Peptide Abolishes Its Ability to Inhibit the IP3 Receptor.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0073386

By:

Monaco, Giovanni;
Decrock, Elke;
Nuyts, Koen;
Wagner II, Larry E.;
Luyten, Tomas;
Strelkov, Sergei V.;
Missiaen, Ludwig;
De Borggraeve, Wim M.;
Leybaert, Luc;
Yule, David I.;
De Smedt, Humbert;
Parys, Jan B.;
Bultynck, Geert

Publication type:

Article

An Amphipathic Alpha-Helix in the Prodomain of Cocaine and Amphetamine Regulated Transcript Peptide Precursor Serves as Its Sorting Signal to the Regulated Secretory Pathway.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0059695

By:

Blanco, Elías H.;
Lagos, Carlos F.;
Andrés, María Estela;
Gysling, Katia

Publication type:

Article

Infrared Spectroscopic Studies of Cells and Tissues: Triple Helix Proteins as a Potential Biomarker for Tumors.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058332

By:

Stelling, Allison L.;
Toher, Deirdre;
Uckermann, Ortrud;
Tavkin, Jelena;
Leipnitz, Elke;
Schweizer, Julia;
Cramm, Holger;
Steiner, Gerald;
Geiger, Kathrin D.;
Kirsch, Matthias

Publication type:

Article

Proline: The Distribution, Frequency, Positioning, and Common Functional Roles of Proline and Polyproline Sequences in the Human Proteome.

Published in:

PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0053785

By:

Morgan, Alexander A.;
Rubenstein, Edward

Publication type:

Article

FUS-NLS/Transportin 1 Complex Structure Provides Insights into the Nuclear Targeting Mechanism of FUS and the Implications in ALS.

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047056

By:

Chunyan Niu;
Jiayu Zhang;
Feng Gao;
Liuqing Yang;
Minze Jia;
Haining Zhu;
Weimin Gong

Publication type:

Article

Visualization of Early Events in Acetic Acid Denaturation of HIV-1 Protease: A Molecular Dynamics Study.

Published in:

PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0019830

By:

Borkar, Aditi Narendra;
Rout, Manoj Kumar;
Hosur, Ramakrishna V.

Publication type:

Article

New three-dimensional model based on finite element method of bone nanostructure: single TC molecule scale level.

Published in:

Computer Methods in Biomechanics & Biomedical Engineering, 2017, v. 20, n. 6, p. 617, doi. 10.1080/10255842.2017.1280734

By:

Kraiem, Tesnim;
Barkaoui, Abdelwahed;
Chafra, Moez;
Hambli, Ridha;
Tavares, João Manuel R. S.

Publication type:

Article

Determining the Roles of a Conserved α-Helix in a Global Virulence Regulator from <italic>Staphylococcus aureus</italic>.

Published in:

Protein Journal, 2018, v. 37, n. 2, p. 103, doi. 10.1007/s10930-018-9762-1

By:

Mahapa, Avisek;
Mandal, Sukhendu;
Sinha, Debabrata;
Sau, Subrata;
Sau, Keya

Publication type:

Article

Corrigendum: Local and macroscopic electrostatic interactions in single α-helices.

Published in:

Nature Chemical Biology, 2015, v. 11, n. 9, p. 741, doi. 10.1038/nchembio0915-741e

By:

Baker, Emily G;
Bartlett, Gail J;
Crump, Matthew P;
Sessions, Richard B;
Linden, Noah;
Faul, Charl F J;
Woolfson, Derek N

Publication type:

Article

Secondary structure reshuffling modulates glycosyltransferase function at the membrane.

Published in:

Nature Chemical Biology, 2015, v. 11, n. 1, p. 16, doi. 10.1038/nchembio.1694

By:

Giganti, David;
Albesa-Jové, David;
Urresti, Saioa;
Rodrigo-Unzueta, Ane;
Martínez, Mariano A;
Comino, Natalia;
Barilone, Nathalie;
Bellinzoni, Marco;
Chenal, Alexandre;
Guerin, Marcelo E;
Alzari, Pedro M

Publication type:

Article

Works matching DE "ALPHA helix structure (Proteins)"

Towards Symmetry-Based Explanation of (Approximate) Shapes of Alpha-Helices and Beta-Sheets (and Beta-Barrels) in Protein Structure.

An efficient alpha helix model and simulation framework for stationary electrostatic interaction force estimation.

A novel CAV derived cell-penetrating peptide efficiently delivers exogenous molecules through caveolae-mediated endocytosis.

α-helix formation rate of oligopeptides at subzero temperatures.

Design and Synthesis of Oligoamide-Based Double α-Helix Mimetics.

Tipping the Scale from Disorder to Alpha-helix: Folding of Amphiphilic Peptides in the Presence of Macroscopic and Molecular Interfaces.

Evidence for the participation of an extra α-helix at β-subunit surface in the thermal stability of Co-type nitrile hydratase.

Molecular Probing of the HPV-16 E6 Protein Alpha Helix Binding Groove with Small Molecule Inhibitors.

The region from phenylalanine-28 to lysine-50 of a yeast mitochondrial ATPase inhibitor (IF1) forms an α-helix in solution.

A New i, i + 3 Peptide Stapling System for α-Helix Stabilization.

Prediction of DNA-binding specificity in zinc finger proteins.

Computational analysis of protein-protein interfaces involving an alpha helix: insights for terphenyl-like molecules binding.

Structure and applications of novel influenza HA tri-stalk protein for evaluation of HA stem-specific immunity.

Lipids modulate the insertion and folding of the nascent chains of alpha helical membrane proteins.

Charge‐Induced Secondary Structure Transformation of Amyloid‐Derived Dipeptide Assemblies from β‐Sheet to α‐Helix.

A Bone Morphogenetic Protein (BMP)-derived Peptide Based on the Type I Receptor-binding Site Modifies Cell-type Dependent BMP Signalling.

SKINK: a web server for string kernel based kink prediction in α-helices.

A cytoplasmic helix is required for pentamer formation of the Escherichia coli MscL mechanosensitive channel.

Nanosecond T-Jump Experiment in Poly(glutamic acid): A Circular Dichroism Study.

Waggawagga: comparative visualization of coiled-coil predictions and detection of stable single α-helices (SAH domains).

Blunt Snout Bream Megalobrama amblycephala Yih 1955 Interleukin-10: Characterisation, Comparative Homology Modelling and Expression.

The Clinical Value of Chlamydia Phage Vp2 Protein.

Nonlinear wave trains in three-strand <i>α</i>-helical protein models.

Effect of Oxidation on the Emulsifying Properties of Myofibrillar Proteins.

Applying Unique Molecular Identifiers in Next Generation Sequencing Reveals a Constrained Viral Quasispecies Evolution under Cross-Reactive Antibody Pressure Targeting Long Alpha Helix of Hemagglutinin.

Amino Terminal Region of Dengue Virus NS4A Cytosolic Domain Binds to Highly Curved Liposomes.

Secondary Structure Preferences of Mn<sup>2+</sup> Binding Sites in Bacterial Proteins.

Conformational Changes in Two Inter-Helical Loops of Mhp1 Membrane Transporter.

Alpha-Helical Destabilization of the Bcl-2-BH4-Domain Peptide Abolishes Its Ability to Inhibit the IP<sub>3</sub> Receptor.

An Amphipathic Alpha-Helix in the Prodomain of Cocaine and Amphetamine Regulated Transcript Peptide Precursor Serves as Its Sorting Signal to the Regulated Secretory Pathway.

Infrared Spectroscopic Studies of Cells and Tissues: Triple Helix Proteins as a Potential Biomarker for Tumors.

Proline: The Distribution, Frequency, Positioning, and Common Functional Roles of Proline and Polyproline Sequences in the Human Proteome.

FUS-NLS/Transportin 1 Complex Structure Provides Insights into the Nuclear Targeting Mechanism of FUS and the Implications in ALS.

Visualization of Early Events in Acetic Acid Denaturation of HIV-1 Protease: A Molecular Dynamics Study.

New three-dimensional model based on finite element method of bone nanostructure: single TC molecule scale level.

Determining the Roles of a Conserved α-Helix in a Global Virulence Regulator from <italic>Staphylococcus aureus</italic>.

Corrigendum: Local and macroscopic electrostatic interactions in single α-helices.

Secondary structure reshuffling modulates glycosyltransferase function at the membrane.