Works about ALLOSTERIC proteins

Results: 388

DeepAllo: allosteric site prediction using protein language model (pLM) with multitask learning Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 6, p. 1, doi. 10.1093/bioinformatics/btaf294

By:

Khokhar, Moaaz;
Keskin, Ozlem;
Gursoy, Attila

Publication type:

Article

Coordination of microbial metabolism.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 5, p. 327, doi. 10.1038/nrmicro3238

By:

Chubukov, Victor;
Gerosa, Luca;
Kochanowski, Karl;
Sauer, Uwe

Publication type:

Article

Capsid Assembly Modulators as Antiviral Agents against HBV: Molecular Mechanisms and Clinical Perspectives.

Published in:

Journal of Clinical Medicine, 2022, v. 11, n. 5, p. 1349, doi. 10.3390/jcm11051349

By:

Taverniti, Valerio;
Ligat, Gaëtan;
Debing, Yannick;
Kum, Dieudonne Buh;
Baumert, Thomas F.;
Verrier, Eloi R.

Publication type:

Article

Oligonucleotide-based systems for input-controlled and non-covalently regulated protein binding.

Published in:

Supramolecular Chemistry, 2013, v. 25, n. 12, p. 848, doi. 10.1080/10610278.2013.810337

By:

Battle, Cooper;
Chu, Xiaozhu;
Jayawickramarajah, Janarthanan

Publication type:

Article

Protein recognition via oligonucleotide-linked small molecules: Utilisation of the hemin-binding aptamer.

Published in:

Supramolecular Chemistry, 2009, v. 21, n. 3/4, p. 316, doi. 10.1080/10610270802549717

By:

Harris, D. Calvin;
Chu, Xiaozhu;
Jayawickramarajah, Janarthanan

Publication type:

Article

A parameterized two-domain thermodynamic model explains diverse mutational effects on protein allostery.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.92262

By:

Zhuang Liu;
Gillis, Thomas G.;
Raman, Srivatsan;
Qiang Cui

Publication type:

Article

Repurposing the mammalian RNA-binding protein Musashi-1 as an allosteric translation repressor in bacteria.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.91777

By:

Dolcemascolo, Roswitha;
Heras-Hernández, María;
Goiriz, Lucas;
Montagud-Martínez, Roser;
Requena-Menéndez, Alejandro;
Ruiz, Raúl;
Pérez-Ràfols, Anna;
Higuera-Rodríguez, R. Anahí;
Pérez-Ropero, Guillermo;
Vranken, Wim F.;
Martelli, Tommaso;
Kaiser, Wolfgang;
Buijs, Jos;
Rodrigo, Guillermo

Publication type:

Article

Allosteric regulation of kinase activity in living cells.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.90574

By:

Godbole, Shivani Sujay;
Dokholyan, Nikolay V.

Publication type:

Article

Agonist efficiency links binding and gating in a nicotinic receptor.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.86496

By:

Indurthi, Dinesh C.;
Auerbach, Anthony

Publication type:

Article

Cooperativity leads to temporally-correlated fluctuations in the bacteriophage lambda genetic switch.

Published in:

Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.00214

By:

Shenker, Jacob Q.;
Lin, Milo M.

Publication type:

Article

The effects of ondansetron on diabetes and high-fat diet-induced liver disease: a critical role for protein tyrosine phosphatase 1B.

Published in:

Frontiers in Pharmacology, 2025, p. 1, doi. 10.3389/fphar.2025.1565628

By:

Naeem, Fawad;
Aqeel, Maryam;
Zahid, Muhammad Ammar;
Babar, Mustafeez Mujtaba;
Shah, Fawad Ali;
Agouni, Abdelali;
Malik, Sohaib Zafar

Publication type:

Article

7 TM Receptors.

Published in:: British Journal of Pharmacology, 2004, v. 141, p. S5, doi. 10.1038/sj.bjp.0705673
Publication type:: Article

A Random Forest Model for Predicting Allosteric and Functional Sites on Proteins.

Published in:

Molecular Informatics, 2016, v. 35, n. 3/4, p. 125, doi. 10.1002/minf.201500108

By:

Chen, Ava S.‐Y.;
Westwood, Nicholas J.;
Brear, Paul;
Rogers, Graeme W.;
Mavridis, Lazaros;
Mitchell, John B. O.

Publication type:

Article

Structural Characteristics of the Allosteric Binding Site Represent a Key to Subtype Selective Modulators of Muscarinic Acetylcholine Receptors.

Published in:

Molecular Informatics, 2015, v. 34, n. 8, p. 526, doi. 10.1002/minf.201500025

By:

Bermudez, Marcel;
Rakers, Christin;
Wolber, Gerhard

Publication type:

Article

Canocapavir Is a Novel Capsid Assembly Modulator Inducing a Conformational Change of the Linker Region of HBV Core Protein.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 5, p. 1195, doi. 10.3390/v15051195

By:

Zheng, Yuan;
Yang, Le;
Yu, Lin;
Zhu, Yuanfei;
Wu, Yang;
Zhang, Zhijun;
Xia, Tian;
Deng, Qiang

Publication type:

Article

Balancing Functional Tradeoffs between Protein Stability and ACE2 Binding in the SARS-CoV-2 Omicron BA.2, BA.2.75 and XBB Lineages: Dynamics-Based Network Models Reveal Epistatic Effects Modulating Compensatory Dynamic and Energetic Changes.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 5, p. 1143, doi. 10.3390/v15051143

By:

Verkhivker, Gennady;
Alshahrani, Mohammed;
Gupta, Grace

Publication type:

Article

Novel Antivirals in Clinical Development for Chronic Hepatitis B Infection.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 6, p. 1169, doi. 10.3390/v13061169

By:

Mak, Lung-Yi;
Seto, Wai-Kay;
Yuen, Man-Fung

Publication type:

Article

PTH1R-CaSR Cross Talk: New Treatment Options for Breast Cancer Osteolytic Bone Metastases.

Published in:

International Journal of Endocrinology, 2018, p. 1, doi. 10.1155/2018/7120979

By:

Yang, Yanmei;
Wang, Bin

Publication type:

Article

SenseNet, a tool for analysis of protein structure networks obtained from molecular dynamics simulations.

Published in:

PLoS ONE, 2022, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0265194

By:

Schneider, Markus;
Antes, Iris

Publication type:

Article

Quantitative analysis of allosteric drug-protein binding by biointeraction chromatography.

Published in:

Nature Biotechnology, 2004, v. 22, n. 11, p. 1445, doi. 10.1038/nbt1022

By:

Chen, Jianzhong;
Hage, David S.

Publication type:

Article

How Semiphysiological Population Pharmacokinetic Modeling Incorporating Active Hepatic Uptake Supports Phase II Dose Selection of RO7049389, A Novel Anti–Hepatitis B Virus Drug.

Published in:

Clinical Pharmacology & Therapeutics, 2021, v. 109, n. 4, p. 1081, doi. 10.1002/cpt.2184

By:

Cosson, Valérie;
Feng, Sheng;
Jaminion, Felix;
Lemenuel‐Diot, Annabelle;
Parrott, Neil;
Paehler, Axel;
Bo, Qingyan;
Jin, Yuyan

Publication type:

Article

Efficacy of mGlu<sub>2</sub>-positive allosteric modulators alone and in combination with levetiracetam in the mouse 6 Hz model of psychomotor seizures.

Published in:

Epilepsia (Series 4), 2017, v. 58, n. 3, p. 484, doi. 10.1111/epi.13659

By:

Metcalf, Cameron S.;
Klein, Brian D.;
Smith, Misty D.;
Pruess, Tim;
Ceusters, Marc;
Lavreysen, Hilde;
Pype, Stefan;
Van Osselaer, Nancy;
Twyman, Roy;
White, H. Steve

Publication type:

Article

The genotype‐phenotype landscape of an allosteric protein.

Published in:

Molecular Systems Biology, 2021, v. 17, n. 12, p. 1, doi. 10.15252/msb.202110847

By:

Tack, Drew S;
Tonner, Peter D;
Pressman, Abe;
Olson, Nathan D;
Levy, Sasha F;
Romantseva, Eugenia F;
Alperovich, Nina;
Vasilyeva, Olga;
Ross, David

Publication type:

Article

Bay41-4109-induced aberrant polymers of hepatitis b capsid proteins are removed via STUB1-promoted p62-mediated macroautophagy.

Published in:

PLoS Pathogens, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.ppat.1010204

By:

Lin, Jiacheng;
Yin, Limin;
Xu, Xia-Zhen;
Sun, He-Chen;
Huang, Zhi-Hua;
Ni, Xue-Yun;
Chen, Yan;
Lin, Xu

Publication type:

Article

Amino acid residues at core protein dimer-dimer interface modulate multiple steps of hepatitis B virus replication and HBeAg biogenesis.

Published in:

PLoS Pathogens, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.ppat.1010057

By:

Liu, Hui;
Cheng, Junjun;
Viswanathan, Usha;
Chang, Jinhong;
Lu, Fengmin;
Guo, Ju-Tao

Publication type:

Article

Iridium‐Catalyzed Asymmetric Allylic Substitution of Methyl Azaarenes.

Published in:

Angewandte Chemie, 2022, v. 134, n. 20, p. 1, doi. 10.1002/ange.202200164

By:

Liu, Xi‐Jia;
Zhang, Wen‐Yun;
Zheng, Chao;
You, Shu‐Li

Publication type:

Article

Allosteric Switching of Calmodulin in a Mycobacterium smegmatis porin A (MspA) Nanopore‐Trap.

Published in:

Angewandte Chemie, 2021, v. 133, n. 44, p. 24056, doi. 10.1002/ange.202110545

By:

Liu, Yao;
Pan, Tiezheng;
Wang, Kefan;
Wang, Yuqin;
Yan, Shuanghong;
Wang, Liying;
Zhang, Shanyu;
Du, Xiaoyu;
Jia, Wendong;
Zhang, Panke;
Chen, Hong‐Yuan;
Huang, Shuo

Publication type:

Article

KNOTTED1 mRNA undergoes long-distance transport and interacts with movement protein binding protein 2C in pear ( Pyrus betulaefolia).

Published in:

Plant Cell, Tissue & Organ Culture, 2015, v. 121, n. 1, p. 109, doi. 10.1007/s11240-014-0685-z

By:

Duan, Xuwei;
Zhang, Wenna;
Huang, Jing;
Zhao, Limin;
Ma, Chao;
Hao, Li;
Yuan, Hui;
Harada, Takeo;
Li, Tianzhong

Publication type:

Article

Alpha-fetoprotein contributes to THP-1 cell invasion and chemotaxis via protein kinase and Gi-protein-dependent pathways.

Published in:

Molecular & Cellular Biochemistry, 2013, v. 379, n. 1/2, p. 283, doi. 10.1007/s11010-013-1650-6

By:

Zubkova, Ekaterina;
Semenkova, Lidiya;
Dudich, Elena;
Dudich, Igor;
Parfyonova, Yelena;
Menshikov, Mikhail

Publication type:

Article

Gating Models of the Anomalous Mole-Fraction Effect of Single-Channel Current in Chara.

Published in:

Journal of Membrane Biology, 2003, v. 192, n. 1, p. 45, doi. 10.1007/s00232-002-1063-z

By:

Hansen, U. P.;
Cakan, O.;
Abshagen-Keunecke, M.;
Farokhi, A.

Publication type:

Article

The protein and transcript profiles of human semen.

Published in:

Cell & Tissue Research, 2016, v. 363, n. 1, p. 85, doi. 10.1007/s00441-015-2237-1

By:

Jodar, Meritxell;
Sendler, Edward;
Krawetz, Stephen

Publication type:

Article

Predicting allosteric pockets in protein biological assemblages.

Published in:

Bioinformatics, 2023, v. 39, n. 5, p. 1, doi. 10.1093/bioinformatics/btad275

By:

Kumar, Ambuj;
Kaynak, Burak T;
Dorman, Karin S;
Doruker, Pemra;
Jernigan, Robert L

Publication type:

Article

ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution.

Published in:

Bioinformatics, 2021, v. 37, n. 21, p. 3956, doi. 10.1093/bioinformatics/btab496

By:

Kaynak, Burak T;
Zhang, She;
Bahar, Ivet;
Doruker, Pemra

Publication type:

Article

Author Correction: Defective internal allosteric network imparts dysfunctional ATP/substrate-binding cooperativity in oncogenic chimera of protein kinase A.

Published in:

2021

By:

Olivieri, Cristina;
Walker, Caitlin;
Karamafrooz, Adak;
Wang, Yingjie;
Manu, V. S.;
Porcelli, Fernando;
Blumenthal, Donald K.;
Thomas, David D.;
Bernlohr, David A.;
Simon, Sanford M.;
Taylor, Susan S.;
Veglia, Gianluigi

Publication type:

Correction Notice

Anti-apoptotic BCL-2 regulation by changes in dynamics of its long unstructured loop.

Published in:

Communications Biology, 2020, v. 3, n. 1, p. N.PAG, doi. 10.1038/s42003-020-01390-6

By:

Lan, Yu-Jing;
Yeh, Pei-Shan;
Kao, Te-Yu;
Lo, Yuan-Chao;
Sue, Shih-Che;
Chen, Yu-Wen;
Hwang, Dennis W.;
Chiang, Yun-Wei

Publication type:

Article

Chemical reactivity indices and mechanism-based read-across for non-animal based assessment of skin sensitisation potential.

Published in:

Journal of Applied Toxicology, 2008, v. 28, n. 4, p. 443, doi. 10.1002/jat.1293

By:

Roberts, David W.;
Aptula, Aynur O.;
Patlewicz, Grace;
Pease, Camilla

Publication type:

Article

Bioelectrocatalytic Electrodes Modified with PQQ‐Glucose Dehydrogenase‐Calmodulin Chimera Switchable by Peptide Signals: Pathway to Generic Bioelectronic Systems Controlled by Biomolecular Inputs.

Published in:

ChemElectroChem, 2019, v. 6, n. 3, p. 638, doi. 10.1002/celc.201801095

By:

Gamella, Maria;
Guo, Zhong;
Alexandrov, Kirill;
Katz, Evgeny

Publication type:

Article

SigrafW: An Easy-to-use Program for Fitting Enzyme Kinetic Data.

Published in:

Biochemistry & Molecular Biology Education, 2005, v. 33, n. 6, p. 399, doi. 10.1002/bmb.2005.49403306399

By:

Leone, Francisco Assis;
Baranauskas, José Augusto;
Furriel, Rosa Prazeres Melo;
Borin, Ivana Aparecida

Publication type:

Article

The Hepatitis B Virus Nucleocapsid—Dynamic Compartment for Infectious Virus Production and New Antiviral Target.

Published in:

Biomedicines, 2021, v. 9, n. 11, p. 1577, doi. 10.3390/biomedicines9111577

By:

Niklasch, Matthias;
Zimmermann, Peter;
Nassal, Michael

Publication type:

Article

Improved Synthesis of First Cell-Permeable Allosteric PTPRZ Inhibitor NAZ2329.

Published in:

Russian Journal of General Chemistry, 2021, v. 91, n. 10, p. 2095, doi. 10.1134/S1070363221100273

By:

Hu, Wei;
Zeng, Qiang;
Chen, Weiming

Publication type:

Article

Pleiotropic Effects of Bacterial Small Alarmone Synthetases: Underscoring the Dual-Domain Small Alarmone Synthetases in Mycobacterium smegmatis.

Published in:

Frontiers in Microbiology, 2020, p. N.PAG, doi. 10.3389/fmicb.2020.594024

By:

Krishnan, Sushma;
Chatterji, Dipankar

Publication type:

Article

New Biomarkers of Chronic Hepatitis B.

Published in:

Gut & Liver, 2019, v. 13, n. 6, p. 589, doi. 10.5009/gnl18425

By:

Lung-Yi Mak;
Wai-Kay Seto;
James Fung;
Man-Fung Yuen

Publication type:

Article

Increase of the Corticosterone Level in Ducklings During the Sensitive Period of the Following Response.

Published in:

Developmental Psychobiology, 1977, v. 10, n. 1, p. 59, doi. 10.1002/dev.420100109

By:

Weiss, J.;
Köhler, W.;
Landsberg, J.-W.

Publication type:

Article

Neural relational inference to learn long-range allosteric interactions in proteins from molecular dynamics simulations.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29331-3

By:

Zhu, Jingxuan;
Wang, Juexin;
Han, Weiwei;
Xu, Dong

Publication type:

Article

Engineering and exploiting synthetic allostery of NanoLuc luciferase.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28425-2

By:

Guo, Zhong;
Parakra, Rinky D.;
Xiong, Ying;
Johnston, Wayne A.;
Walden, Patricia;
Edwardraja, Selvakumar;
Moradi, Shayli Varasteh;
Ungerer, Jacobus P. J.;
Ai, Hui-wang;
Phillips, Jonathan J.;
Alexandrov, Kirill

Publication type:

Article

Two-colour single-molecule photoinduced electron transfer fluorescence imaging microscopy of chaperone dynamics.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27286-5

By:

Schubert, Jonathan;
Schulze, Andrea;
Prodromou, Chrisostomos;
Neuweiler, Hannes

Publication type:

Article

Epistasis shapes the fitness landscape of an allosteric specificity switch.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25826-7

By:

Nishikawa, Kyle K.;
Hoppe, Nicholas;
Smith, Robert;
Bingman, Craig;
Raman, Srivatsan

Publication type:

Article

The protein architecture and allosteric landscape of HNF4α.

Published in:

Frontiers in Endocrinology, 2023, p. 01, doi. 10.3389/fendo.2023.1219092

By:

Rastinejad, Fraydoon

Publication type:

Article

Rational design of allosteric modulators: Challenges and successes.

Published in:

WIREs: Computational Molecular Science, 2021, v. 11, n. 6, p. 1, doi. 10.1002/wcms.1529

By:

Chatzigoulas, Alexios;
Cournia, Zoe

Publication type:

Article

Mechanistic Understanding of the Palmitoylation of G o Protein in the Allosteric Regulation of Adhesion Receptor GPR97.

Published in:

Pharmaceutics, 2022, v. 14, n. 9, p. N.PAG, doi. 10.3390/pharmaceutics14091856

By:

Zhang, Hao;
Chu, Guojun;
Wang, Gaoming;
Yao, Min;
Lu, Shaoyong;
Chen, Ting

Publication type:

Article