Works matching Comparative genomics

Results: 5000

The NIH Comparative Genomics Resource: addressing the promises and challenges of comparative genomics on human health.

Published in:

BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09643-4

By:

Bornstein, Kristin;
Gryan, Gary;
Chang, E. Sally;
Marchler-Bauer, Aron;
Schneider, Valerie A.

Publication type:

Article

Comparative genomic characterization of multidrug-resistant Citrobacter spp. strains in Fennec fox imported to China.

Published in:

Gut Pathogens, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13099-021-00458-w

By:

Qin, Jie;
Zhao, Yishu;
Wang, Aifang;
Chi, Xiaohui;
Wen, Peipei;
Li, Shuang;
Wu, Lingjiao;
Bi, Sheng;
Xu, Hao

Publication type:

Article

Late-Onset Sacsinopathy Diagnosed by Exome Sequencing and Comparative Genomic Hybridization.

Published in:

Journal of Neurogenetics, 2013, v. 27, n. 4, p. 176, doi. 10.3109/01677063.2013.831094

By:

Pyle, Angela;
Griffin, Helen;
Duff, Jennifer;
Bennett, Shona;
Zwolinski, Simon;
Smertenko, Tania;
Yu-Wai Man, Patrick;
Santibanez-Koref, Mauro;
Horvath, Rita;
Chinnery, Patrick F.

Publication type:

Article

Gene Tags Assessment by Comparative Genomics (GTACG): A User-Friendly Framework for Bacterial Comparative Genomics.

Published in:

Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00725

By:

Santiago, Caio Rafael do Nascimento;
Assis, Renata de Almeida Barbosa;
Moreira, Leandro Marcio;
Digiampietri, Luciano Antonio

Publication type:

Article

Whole Genome Sequencing and Comparative Genomics Analysis of Goat-Derived Klebsiella oxytoca.

Published in:

Genes, 2025, v. 16, n. 1, p. 13, doi. 10.3390/genes16010013

By:

Zhang, Yu;
Zhang, Zhenxing;
Wang, Ziying;
Chen, Yimei;
Liao, Lianjie;
Du, Li;
Gao, Hongyan;
Chen, Qiaoling;
Man, Churiga;
Chen, Si;
Wang, Fengyang

Publication type:

Article

Sequencing and Characterization of M. morganii Strain UM869: A Comprehensive Comparative Genomic Analysis of Virulence, Antibiotic Resistance, and Functional Pathways.

Published in:

Genes, 2023, v. 14, n. 6, p. 1279, doi. 10.3390/genes14061279

By:

Behera, Dibyajyoti Uttameswar;
Dixit, Sangita;
Gaur, Mahendra;
Mishra, Rukmini;
Sahoo, Rajesh Kumar;
Sahoo, Maheswata;
Behera, Bijay Kumar;
Subudhi, Bharat Bhusan;
Bharat, Sutar Suhas;
Subudhi, Enketeswara

Publication type:

Article

Comparative Genomic Analysis of Lactiplantibacillus plantarum Isolated from Different Niches.

Published in:

Genes, 2021, v. 12, n. 2, p. 241, doi. 10.3390/genes12020241

By:

Mao, Bingyong;
Yin, Ruimin;
Li, Xiaoshu;
Cui, Shumao;
Zhang, Hao;
Zhao, Jianxin;
Chen, Wei;
Gupta, Radhey S.

Publication type:

Article

Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics.

Published in:

Genes, 2019, v. 10, n. 8, p. 601, doi. 10.3390/genes10080601

By:

Nelkner, Johanna;
Torres Tejerizo, Gonzalo;
Hassa, Julia;
Lin, Timo Wentong;
Witte, Julian;
Verwaaijen, Bart;
Winkler, Anika;
Bunk, Boyke;
Spröer, Cathrin;
Overmann, Jörg;
Grosch, Rita;
Pühler, Alfred;
Schlüter, Andreas

Publication type:

Article

El Genoma en los Cordados: Introducción a la Genómica Comparada.

Published in:

International Journal of Morphology, 2012, v. 30, n. 4, p. 1309, doi. 10.4067/S0717-95022012000400009

By:

Ávila, Rodolfo E.;
Samar, María Elena;
Díaz-Beltrán, Leticia;
Esteban, Francisco J.

Publication type:

Article

Comparative Genomic Analysis of a Methylorubrum rhodesianum MB200 Isolated from Biogas Digesters Provided New Insights into the Carbon Metabolism of Methylotrophic Bacteria.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 8, p. 7521, doi. 10.3390/ijms24087521

By:

Zhang, Xi;
Xia, Liqing;
Liu, Jianyi;
Wang, Zihao;
Yang, Yanni;
Wu, Yiting;
Yang, Qingshan;
Huang, Luodong;
Shen, Peihong

Publication type:

Article

Multiplex PCR for detection of the Vibrio genus and five pathogenic Vibrio species with primer sets designed using comparative genomics.

Published in:

BMC Microbiology, 2015, v. 15, p. 1, doi. 10.1186/s12866-015-0577-3

By:

Hyun-Joong Kim;
Ji-Oh Ryu;
Shin-Young Lee;
Ei-Seul Kim;
Hae-Yeong Kim

Publication type:

Article

Functional analysis and comparative genomics of Rahnella perminowiae S11P1 and Variovorax sp. S12S4, two plant growth-promoting rhizobacteria isolated from Crocus sativus L. (saffron) rhizosphere.

Published in:

BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10088-6

By:

ZOUAGUI, Rahma;
ZOUAGUI, Houda;
AURAG, Jamal;
IBRAHIMI, Azeddine;
SBABOU, Laila

Publication type:

Article

The Integration of Genome Mining, Comparative Genomics, and Functional Genetics for Biosynthetic Gene Cluster Identification.

Published in:

Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.600116

By:

Williams, Ashley N.;
Sorout, Naveen;
Cameron, Alexander J.;
Stavrinides, John

Publication type:

Article

Profiling conserved transcription factor binding motifs in Phaseolus vulgaris through comparative genomics.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11309-2

By:

Kondratova, Liudmyla;
Vallejos, C. Eduardo;
Conesa, Ana

Publication type:

Article

Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3925-x

By:

Saffarian, Azadeh;
Touchon, Marie;
Mulet, Céline;
Tournebize, Régis;
Passet, Virginie;
Brisse, Sylvain;
Rocha, Eduardo P. C.;
Sansonetti, Philippe J.;
Pédron, Thierry

Publication type:

Article

Comparative genomics analysis reveals gene family expansion and changes of expression patterns associated with natural adaptations of flowering time and secondary metabolism in yellow Camellia.

Published in:

Functional & Integrative Genomics, 2018, v. 18, n. 6, p. 659, doi. 10.1007/s10142-018-0617-9

By:

Li, Xinlei;
Fan, Zhengqi;
Guo, Haobo;
Ye, Ning;
Lyu, Tao;
Yang, Wen;
Wang, Jie;
Wang, Jia-Tong;
Wu, Bin;
Li, Jiyuan;
Yin, Hengfu

Publication type:

Article

P11 - Comparative genomics and phylogenetic analysis of Vitis vinifera: insides from the complete plastid genome sequences.

Published in:

Julius-Kühn-Archiv, 2022, n. 470, p. 92

By:

Pipia, Ia;
Tabidze, Vazha;
Bezhashvili, Mari;
Gujabidze, Ana;
Nozadze, Tengiz;
Zhorzholiani, Natia;
Lacombe, Thiery

Publication type:

Article

Corrigendum: Comparative Genomics of Marine Sponge-Derived Streptomyces spp. Isolates SM17 and SM18 With Their Closest Terrestrial Relatives Provides Novel Insights Into Environmental Niche Adaptations and Secondary Metabolite Biosynthesis Potential.

Published in:

2019

By:

Almeida, Eduardo L.;
Carrillo Rincón, Andrés Felipe;
Jackson, Stephen A.;
Dobson, Alan D. W.

Publication type:

Correction Notice

cano-wgMLST_BacCompare: A Bacterial Genome Analysis Platform for Epidemiological Investigation and Comparative Genomic Analysis.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01687

By:

Liu, Yen-Yi;
Lin, Ji-Wei;
Chen, Chih-Chieh

Publication type:

Article

Complete Genome Sequence of Weissella hellenica 0916-4-2 and Its Comparative Genomic Analysis.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01619

By:

Panthee, Suresh;
Paudel, Atmika;
Blom, Jochen;
Hamamoto, Hiroshi;
Sekimizu, Kazuhisa

Publication type:

Article

Comparative genomics of seven genomes of genus Idiomarina reveals important halo adaptations and genes for stress response.

Published in:

3 Biotech, 2024, v. 14, n. 2, p. 1, doi. 10.1007/s13205-023-03887-3

By:

Kaur, Jaspreet;
Kaur, Jasvinder

Publication type:

Article

Comparative genomics can provide new insights into the evolutionary mechanisms and gene function in CAM plants.

Published in:

Journal of Experimental Botany, 2019, v. 70, n. 22, p. 6539, doi. 10.1093/jxb/erz408

By:

Yang, Xiaohan;
Liu, Degao;
Tschaplinski, Timothy J;
Tuskan, Gerald A

Publication type:

Article

Comparative genomic analysis of Mycobacterium intracellulare: implications for clinical taxonomic classification in pulmonary Mycobacterium avium-intracellulare complex disease.

Published in:

BMC Microbiology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12866-021-02163-9

By:

Tateishi, Yoshitaka;
Ozeki, Yuriko;
Nishiyama, Akihito;
Miki, Mari;
Maekura, Ryoji;
Fukushima, Yukari;
Nakajima, Chie;
Suzuki, Yasuhiko;
Matsumoto, Sohkichi

Publication type:

Article

Flexible comparative genomics of prokaryotic transcriptional regulatory networks.

Published in:

BMC Genomics, 2020, v. 21, p. 1, doi. 10.1186/s12864-020-06838-x

By:

Kılıç, Sefa;
Sánchez-Osuna, Miquel;
Collado-Padilla, Antonio;
Barbé, Jordi;
Erill, Ivan

Publication type:

Article

A tiered approach to comparative genomics.

Published in:

Briefings in Functional Genomics & Proteomics, 2005, v. 4, n. 2, p. 178, doi. 10.1093/bfgp/4.2.178

By:

Ptacek, Travis;
Sell, Susan M.

Publication type:

Article

Comparative genomic approach reveals novel conserved microRNAs in Inner Mongolia cashmere goat skin and longissimus dorsi.

Published in:

Molecular Biology Reports, 2015, v. 42, n. 5, p. 989, doi. 10.1007/s11033-014-3835-9

By:

Su, Rui;
Fu, Shaoyin;
Zhang, Yanjun;
Wang, Ruijun;
Zhou, Yanhong;
Li, Jinquan;
Zhang, Wenguang

Publication type:

Article

A high-quality cucumber genome assembly enhances computational comparative genomics.

Published in:

Molecular Genetics & Genomics, 2020, v. 295, n. 1, p. 177, doi. 10.1007/s00438-019-01614-3

By:

Osipowski, Paweł;
Pawełkowicz, Magdalena;
Wojcieszek, Michał;
Skarzyńska, Agnieszka;
Przybecki, Zbigniew;
Pląder, Wojciech

Publication type:

Article

Comparative genomics for non-O1/O139 Vibrio cholerae isolates recovered from the Yangtze River Estuary versus V. cholerae representative isolates from serogroup O1.

Published in:

Molecular Genetics & Genomics, 2019, v. 294, n. 2, p. 417, doi. 10.1007/s00438-018-1514-6

By:

Gong, Li;
Yu, Pan;
Tang, Yadong;
Wang, Yaping;
Chen, Lanming;
Zheng, Huajun;
Gu, Wenyi;
He, Wei;
Dong, Yue;
Peng, Xu;
She, Qunxin;
Xie, Lu

Publication type:

Article

Genetic Alterations in Pediatric Medulloblastomas Detected by Comparative Genomic Hybridization.

Published in:

Pediatric Neurosurgery, 1999, v. 31, n. 1, p. 27, doi. 10.1159/000028827

By:

Nishizaki, Takafumi;
Harada, Katsumi;
Kubota, Hisashi;
Harada, Kei;
Ozaki, Satoshi;
Ito, Haruhide;
Sasaki, Kohsuke

Publication type:

Article

Comparative genomics of casein genes.

Published in:

Journal of Dairy Research, 2019, v. 86, n. 3, p. 323, doi. 10.1017/S0022029919000414

By:

Madende, Moses;
Osthoff, Gernot

Publication type:

Article

Comparative genomics of Myxococcus and Pyxidicoccus, including the description of four novel species: Myxococcus guangdongensis sp. nov., Myxococcus qinghaiensis sp. nov., Myxococcus dinghuensis sp. nov., and Pyxidicoccus xibeiensis sp. nov.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 01, doi. 10.3389/fmicb.2022.995049

By:

Chunling Wang;
Yingying Lv;
Lian Zhou;
Yulian Zhang;
Qing Yao;
Honghui Zhu

Publication type:

Article

Comparative genomic analysis of Lacticaseibacillus paracasei SMN-LBK from koumiss.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.1042117

By:

JianghanÂ Wang;
TongÂ Wang;
YandieÂ Li;
ZhexinÂ Fan;
ZhuoxiaÂ Lv;
LintingÂ Liu;
XuÂ Li;
BaokunÂ Li

Publication type:

Article

Comparative Genomic Analyses Provide Insight Into the Pathogenicity of Metschnikowia bicuspidata LNES0119.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.939141

By:

Jiang, Hongbo;
Bao, Jie;
Xing, Yuenan;
Li, Xiaodong;
Chen, Qijun

Publication type:

Article

Comparative Genomics Provides Insights Into Genetic Diversity of Clostridium tyrobutyricum and Potential Implications for Late Blowing Defects in Cheese.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.889551

By:

Podrzaj, Lucija;
Burtscher, Johanna;
Domig, Konrad J.

Publication type:

Article

High-Resolution Array Comparative Genomic Hybridization Utility in Polish Newborns with Isolated Cleft Lip and Palate.

Published in:

Neonatology (16617800), 2015, v. 107, n. 3, p. 173, doi. 10.1159/000368878

By:

Szczałuba, Krzysztof;
Nowakowska, Beata a.;
Sobecka, Katarzyna;
Smyk, Marta;
Castaneda, Jennifer;
Dudkiewicz, Zofia;
Kutkowska-Kaźmierczak, anna;
Sąsiadek, Maria M.;
Śmigiel, Robert;
Bocian, Ewa

Publication type:

Article

A comparative genomics approach for identifying genetic factors in Escherichia coli isolates associated with bovine diseases.

Published in:

Journal of Applied Microbiology, 2022, v. 133, n. 6, p. 3490, doi. 10.1111/jam.15781

By:

Khawaskar, Damini;
Subbaiyan, Anbazhagan;
Balusamy, Dhayananth;
Inbaraj, Sophia;
Abhishek;
Vinodh Kumar, Obli Rajendhran;
Nagaleekar, Viswas Konasagara;
Sinha, Dharmendra Kumar;
Chaudhuri, Pallab;
Singh, Bhoj Raj;
Chaturvedi, Vinod Kumar;
Thomas, Prasad

Publication type:

Article

Investigation of the thermophilic mechanism in the genus <italic>Porphyrobacter</italic> by comparative genomic analysis.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4789-4

By:

Xu, Lin;
Wu, Yue-Hong;
Zhou, Peng;
Cheng, Hong;
Liu, Qian;
Xu, Xue-Wei

Publication type:

Article

Sinbase: An Integrated Database to Study Genomics, Genetics and Comparative Genomics in Sesamum indicum.

Published in:

Plant & Cell Physiology, 2015, v. 56, n. 1, p. e2, doi. 10.1093/pcp/pcu175

By:

Wang, Linhai;
Yu, Jingyin;
Li, Donghua;
Zhang, Xiurong

Publication type:

Article

Whole-genome sequencing and comparative genomic analyses of the medicinal fungus Sanguinoderma infundibulare in Ganodermataceae.

Published in:

G3: Genes | Genomes | Genetics, 2024, v. 14, n. 4, p. 1, doi. 10.1093/g3journal/jkae005

By:

Fang, Yuxuan;
Wu, Dongmei;
Gao, Neng;
Lv, Mengxue;
Zhou, Miao;
Ma, Chuangui;
Sun, Yifei;
Cui, Baokai

Publication type:

Article

Microarray-based comparative genomic hybridization and its applications in human genetics.

Published in:

Clinical Genetics, 2004, v. 66, n. 6, p. 488, doi. 10.1111/j.1399-0004.2004.00322.x

By:

Oostlander, A. E.;
Meijer, G. A.;
Ylstra, B.

Publication type:

Article

Evolution and Comparative Genomics of the pSM22 Plasmid of the IncF/MOB<sub>F12</sub> Group.

Published in:

Molecular Biology, 2019, v. 53, n. 4, p. 535, doi. 10.1134/S0026893319040162

By:

Iasakov, T. R.;
Anisimova, L. G.;
Zharikova, N. V.;
Zhurenko, E. I.;
Korobov, V. V.;
Markusheva, T. V.

Publication type:

Article

Standardized genome-wide function prediction enables comparative functional genomics: a new application area for Gene Ontologies in plants.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac023

By:

Fattel, Leila;
Psaroudakis, Dennis;
Yanarella, Colleen F;
Chiteri, Kevin O;
Dostalik, Haley A;
Joshi, Parnal;
Starr, Dollye C;
Vu, Ha;
Wimalanathan, Kokulapalan;
Lawrence-Dill, Carolyn J

Publication type:

Article

Amplifications of EVX2 and HOXD9-HOXD13 on 2q31 in mature cystic teratomas of the ovary identified by array comparative genomic hybridization may explain teratoma characteristics in chondrogenesis and osteogenesis.

Published in:

Journal of Ovarian Research, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13048-024-01458-5

By:

Wang, Wen-Chung;
Hou, Tai-Cheng;
Kuo, Chen-Yun;
Lai, Yen-Chein

Publication type:

Article

Comparative genomic analysis of Shiga toxin-producing and non-Shiga toxin-producing Escherichia coli O157 isolated from outbreaks in Korea.

Published in:

Gut Pathogens, 2017, v. 9, p. 1, doi. 10.1186/s13099-017-0156-2

By:

Taesoo Kwon;
Won Kim;
Seung-Hak Cho

Publication type:

Article

Comparative genomics analyses revealed two virulent Listeria monocytogenes strains isolated from ready-to-eat food.

Published in:

Gut Pathogens, 2016, v. 8, p. 1, doi. 10.1186/s13099-016-0147-8

By:

Shu Yong Lim;
Kien-Pong Yap;
Kwai Lin Thong

Publication type:

Article

Phylogenomic analyses and comparative genomic studies of Thermus strains isolated from Tengchong and Tibet Hot Springs, China.

Published in:

Antonie van Leeuwenhoek, 2024, v. 117, n. 1, p. 1, doi. 10.1007/s10482-024-02001-8

By:

Khan, Inam Ullah;
Saqib, Muhammad;
Amin, Arshia;
Manzoor, Sadia;
Ahmed, Iftikhar;
Liu, Rui-Rui;
Jiao, Jian-Yu;
Zhi, Xiao-Yang;
Li, Wen-Jun

Publication type:

Article

Comparative Genomics of Pesticide-Degrading Enterococcus Symbionts of Spodoptera frugiperda (Lepidoptera: Noctuidae) Leads to the Identification of Two New Species and the Reappraisal of Insect-Associated Enterococcus Species.

Published in:

Microbial Ecology, 2023, v. 86, n. 4, p. 2583, doi. 10.1007/s00248-023-02264-0

By:

Gomes, Ana Flávia Freitas;
de Almeida, Luís Gustavo;
Cônsoli, Fernando Luis

Publication type:

Article

Comparative genomics analysis of pKF3-94 in Klebsiella pneumoniae reveals plasmid compatibility and horizontal gene transfer.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00831

By:

Jianchao Ying;
Songquan Wu;
Kaibo Zhang;
Ziqiang Wang;
Wen Zhu;
Mei Zhu;
Ying Zhang;
Cong Cheng;
Huifeng Wang;
Huifen Tou;
Chuanxin Zhu;
Peizhen Li;
Jun Ying;
Teng Xu;
Huiguang Yi;
Jinsong Li;
Liyan Ni;
Zuyuan Xu;
Qiyu Bao;
Junwan Lu

Publication type:

Article

Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae: An Improved Platform for Comparative Genomics.

Published in:

Genome Biology & Evolution, 2022, v. 14, n. 4, p. 1, doi. 10.1093/gbe/evac042

By:

Stevens, Lewis;
Moya, Nicolas D.;
Tanny, Robyn E.;
Gibson, Sophia B.;
Tracey, Alan;
Na, Huimin;
Chitrakar, Rojin;
Dekker, Job;
Walhout, Albertha J.M.;
Baugh, L. Ryan;
Andersen, Erik C.

Publication type:

Article

Comparative Genomics Identifies Putative Signatures of Sociality in Spiders.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 3, p. 122, doi. 10.1093/gbe/evaa007

By:

Tong, Chao;
Najm, Gabriella M;
Pinter-Wollman, Noa;
Pruitt, Jonathan N;
Linksvayer, Timothy A

Publication type:

Article