Works matching Catalytic RNA

Results: 1589

Programmable formation of catalytic RNA triangles and squares by assembling modular RNA enzymes.

Published in:

Journal of Biochemistry, 2017, v. 161, n. 5, p. 451, doi. 10.1093/jb/mvw093

By:

Hiroki Oi;
Daisuke Fujita;
Yuki Suzuki;
Hiroshi Sugiyama;
Masayuki Endo;
Shigeyoshi Matsumura;
Yoshiya Ikawa

Publication type:

Article

Catalytic promiscuity in the RNA World may have aided the evolution of prebiotic metabolism.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pcbi.1008634

By:

Vörös, Dániel;
Könnyű, Balázs;
Czárán, Tamás

Publication type:

Article

Effects of lipid membranes on RNA catalytic activity and stability.

Published in:

Biology of the Cell (Wiley-Blackwell), 2025, v. 117, n. 2, p. 1, doi. 10.1111/boc.202400115

By:

Czerniak, Tomasz;
Saenz, James P.

Publication type:

Article

Inhibition of hepatitis C virus by an M1GS ribozyme derived from the catalytic RNA subunit of Escherichia coli RNase P.

Published in:

Virology Journal, 2014, v. 11, n. 1, p. 1, doi. 10.1186/1743-422X-11-86

By:

Xinliang Mao;
Xifang Li;
Mao, Xinjun;
Zhiwen Huang;
Chengcheng Zhang;
Wenjun Zhang;
Jianguo Wu;
Gang Li

Publication type:

Article

Characterization of the Catalytic Subunits of the RNA Exosome-like Complex in Plasmodium falciparum.

Published in:

Journal of Eukaryotic Microbiology, 2018, v. 65, n. 6, p. 843, doi. 10.1111/jeu.12625

By:

Ning Jiang;
Shengchao Yu;
Na Yang;
Ying Feng;
Xiaoyu Sang;
Yao Wang;
Wahlgren, Mats;
Qijun Chen

Publication type:

Article

Mechanisms of catalytic RNA molecules.

Published in:

Biochemical Society Transactions, 2021, v. 49, n. 4, p. 1529, doi. 10.1042/BST20200465

By:

Alonso, Dulce;
Mondragón, Alfonso

Publication type:

Article

HIV-1 TAR as Anchoring Site for Optimized Catalytic RNAs.

Published in:

Biological Chemistry, 2003, v. 384, n. 3, p. 343

By:

Puerta-Fernández, Elena;
Barroso-del Jesus, Alicia;
Romero-López, Cristina;
Berzal-Herranz, Alfredo

Publication type:

Article

Functional Identification of Catalytic Metal Ion Binding Sites within RNA.

Published in:

PLoS Biology, 2005, v. 3, n. 9, p. 1536, doi. 10.1371/journal.pbio.0030277

By:

Hougland, James L.;
Kravchuk, Alexander V.;
Herschlag, Daniel;
Piccirilli, Joseph A.

Publication type:

Article

The role of catalytic RNA in the origin and early evolution of life on earth.

Published in:

1996

By:

Joyce, Gerald

Publication type:

Abstract

25 years of catalytic RNA: looking younger than ever!

Published in:

Biological Chemistry, 2007, v. 388, n. 7, p. 659, doi. 10.1515/BC.2007.086

By:

Hammann, Christian;
Hartmann, Roland K.;
Marchfelder, Anita

Publication type:

Article

The catalytic diversity of RNAs.

Published in:

Nature Reviews Molecular Cell Biology, 2005, v. 6, n. 5, p. 399, doi. 10.1038/nrm1647

By:

Fedor, Martha J.;
Williamson, James R.

Publication type:

Article

Empirical demonstration of environmental sensing in catalytic RNA: evolution of interpretive behavior at the origins of life.

Published in:

BMC Evolutionary Biology, 2014, v. 14, p. 1, doi. 10.1186/s12862-014-0248-2

By:

Lehman, Niles;
Bernhard, Tess;
Larson, Brian C.;
Robinson, Andrew J. N.;
Southgate, Christopher C. B.

Publication type:

Article

Ribozymes: Catalytic RNAs that cut things, make things, and do odd and useful jobs.

Published in:

Biologist, 2002, v. 49, n. 5, p. 199

By:

Walter, Nils G.;
Engelke, David R.

Publication type:

Article

The many faces of the hairpin ribozyme: Structural and functional variants of a small catalytic rna.

Published in:

IUBMB Life, 2012, v. 64, n. 1, p. 36, doi. 10.1002/iub.575

By:

Müller, Sabine;
Appel, Bettina;
Krellenberg, Tobias;
Petkovic, Sonja

Publication type:

Article

Recent insights on RNA folding mechanisms from catalytic RNA.

Published in:

Cellular & Molecular Life Sciences, 2000, v. 57, n. 5, p. 796, doi. 10.1007/s000180050042

By:

Woodson, S. A.

Publication type:

Article

Catalytic RNA Oligomers Formed by Co-Oligomerization of a Pair of Bimolecular RNase P Ribozymes.

Published in:

Molecules, 2022, v. 27, n. 23, p. 8298, doi. 10.3390/molecules27238298

By:

Siddika, Mst. Ayesha;
Yamada, Takahiro;
Aoyama, Risako;
Hidaka, Kumi;
Sugiyama, Hiroshi;
Endo, Masayuki;
Matsumura, Shigeyoshi;
Ikawa, Yoshiya

Publication type:

Article

The catalytic mechanism of the RNA methyltransferase METTL3.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.92537

By:

Corbeski, Ivan;
Andrés Vargas-Rosales, Pablo;
Bedi, Rajiv Kumar;
Jiahua Deng;
Coelho, Dylan;
Braud, Emmanuelle;
Iannazzo, Laura;
Yaozong Li;
Danzhi Huang;
Ethève-Quelquejeu, Mélanie;
Qiang Cui;
Caflisch, Amedeo

Publication type:

Article

Harnessing Catalytic RNA Circuits for Construction of Artificial Signaling Pathways in Mammalian Cells.

Published in:

Angewandte Chemie, 2024, v. 136, n. 14, p. 1, doi. 10.1002/ange.202319309

By:

Wu, Chao‐Qun;
Wu, Ruo‐Yue;
Zhang, Qiu‐Long;
Wang, Liang‐Liang;
Wang, Yang;
Dai, Chu;
Zhang, Chen‐Xi;
Xu, Liang

Publication type:

Article

Mesoporous Metal–Organic Frameworks for Catalytic RNA Deprotection and Activation.

Published in:

Angewandte Chemie, 2023, v. 135, n. 42, p. 1, doi. 10.1002/ange.202302649

By:

Liu, Jin;
Liu, Xingyu;
Liu, Qi;
Cao, Jing;
Lv, Xinheng;
Wang, Shaoru;
Tian, Tian;
Zhou, Xiang;
Deng, Hexiang

Publication type:

Article

Toward Ribosomal RNA Catalytic Activity in the Absence of Protein.

Published in:

Journal of Molecular Evolution, 2007, v. 64, n. 4, p. 472, doi. 10.1007/s00239-006-0211-y

By:

Anderson, Rachel M.;
Kwon, Miyun;
Strobel, Scott A.

Publication type:

Article

Synthesis of Pyrophosphates for In Vitro Selection of Catalytic RNA Molecules.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2008, v. 27, n. 1, p. 43, doi. 10.1080/15257770701571867

By:

Kim, Hyo-Joong;
Kim, MyongJung;
Karalkar, Nilesh;
Hutter, Daniel;
Benner, StevenA.

Publication type:

Article

Exploring the Catalytic Mechanism of the RNA Cap Modification by nsp16-nsp10 Complex of SARS-CoV-2 through a QM/MM Approach.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 1, p. 300, doi. 10.3390/ijms23010300

By:

Silva, José Rogério A.;
Urban, Jaime;
Araújo, Edson;
Lameira, Jerônimo;
Moliner, Vicent;
Alves, Cláudio Nahum

Publication type:

Article

Catalytic DNA and RNA for Targeting MDR1 mRNA.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2003, v. 22, n. 5-8, p. 1521, doi. 10.1081/NCN-120023025

By:

Kuznetsova, M.;
Fokina, A.;
Lukin, M.;
Repkova, M.;
Venyaminova, A.;
Vlassov, V.

Publication type:

Article

The Contribution of Peripheral Stem-Loops to the Catalytic Activity of Archaeal RNase P RNA from Pyrococcus horikoshii OT3.

Published in:

Bioscience, Biotechnology & Biochemistry, 2011, v. 75, n. 4, p. 816, doi. 10.1271/bbb.110110

By:

Hara, Tadashi;
Terada, Atsushi;
Yamaguchi, Hiroki;
Nakashima, Takashi;
Kakuta, Yoshimitsu;
Kimura, Makoto

Publication type:

Article

The cap‐snatching reaction of yeast L‐A double‐stranded RNA virus is reversible and the catalytic sites on both Gag and the Gag domain of Gag‐Pol are active.

Published in:

Molecular Microbiology, 2019, v. 111, n. 2, p. 395, doi. 10.1111/mmi.14161

By:

Fujimura, Tsutomu;
Esteban, Rosa

Publication type:

Article

A minor groove RNA triple helix within the catalytic core of a group I intron.

Published in:

Nature Structural Biology, 1998, v. 5, n. 12, p. 1037, doi. 10.1038/4146

By:

Szewczak, Alexander A.;
Ortoleva-Donnelly, Lori;
Ryder, Sean P.;
Moncoeur, Eileen;
Strobel, Scott A.

Publication type:

Article

In Vivo Evolution of a Catalytic RNA Couples Trans-Splicing to Translation.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0086473

By:

Olson, Karen E.;
Dolan, Gregory F.;
Müller, Ulrich F.

Publication type:

Article

Structural Expansion of Catalytic RNA Nanostructures through Oligomerization of a Cyclic Trimer of Engineered Ribozymes.

Published in:

Molecules, 2023, v. 28, n. 18, p. 6465, doi. 10.3390/molecules28186465

By:

Siddika, Mst. Ayesha;
Oi, Hiroki;
Hidaka, Kumi;
Sugiyama, Hiroshi;
Endo, Masayuki;
Matsumura, Shigeyoshi;
Ikawa, Yoshiya

Publication type:

Article

Hepatitis delta virus-like circular RNAs from diverse metazoans encode conserved hammerhead ribozymes.

Published in:

Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab016

By:

Peña, Marcos de la;
Ceprián, Raquel;
Casey, John L;
Cervera, Amelia

Publication type:

Article

Engineering of RNase P Ribozymes for Therapy against Human Cytomegalovirus Infection.

Published in:

Viruses (1999-4915), 2024, v. 16, n. 8, p. 1196, doi. 10.3390/v16081196

By:

Smith, Adam;
Zhang, Isadora;
Trang, Phong;
Liu, Fenyong

Publication type:

Article

Structural features in the C-terminal region of the Sinorhizobium meliloti RmInt1 group II intron-encoded protein contribute to its maturase and intron DNA-insertion function.

Published in:

FEBS Journal, 2010, v. 277, n. 1, p. 244, doi. 10.1111/j.1742-4658.2009.07478.x

By:

Molina-Sánchez, María D.;
Martínez-Abarca, Francisco;
Toro, Nicolás

Publication type:

Article

Morphing the minimal and full-length hammerhead ribozymes: implications for the cleavage mechanism.

Published in:

Biological Chemistry, 2007, v. 388, n. 7, p. 727, doi. 10.1515/BC.2007.087

By:

Scott, William G.

Publication type:

Article

Prebiotic Factors Influencing the Activity of a Ligase Ribozyme.

Published in:

Life (2075-1729), 2017, v. 7, n. 2, p. 17, doi. 10.3390/life7020017

By:

Anella, Fabrizio;
Danelon, Christophe

Publication type:

Article

Reconciling Ligase Ribozyme Activity with Fatty Acid Vesicle Stability.

Published in:

Life (2075-1729), 2014, v. 4, n. 4, p. 929, doi. 10.3390/life4040929

By:

Anella, Fabrizio;
Danelon, Christophe

Publication type:

Article

Deep mutational scanning of the RNase III-like domain in Trypanosoma brucei RNA editing protein KREPB4.

Published in:

Frontiers in Cellular & Infection Microbiology, 2024, p. 1, doi. 10.3389/fcimb.2024.1381155

By:

McDermott, Suzanne M.;
Vy Pham;
Oliver, Brian;
Carnes, Jason;
Sather, D. Noah;
Stuart, Kenneth D.

Publication type:

Article

An RNA Triangle with Six Ribozyme Units Can Promote a Trans -Splicing Reaction through Trimerization of Unit Ribozyme Dimers.

Published in:

Applied Sciences (2076-3417), 2021, v. 11, n. 6, p. 2583, doi. 10.3390/app11062583

By:

Akagi, Junya;
Yamada, Takahiro;
Hidaka, Kumi;
Fujita, Yoshihiko;
Saito, Hirohide;
Sugiyama, Hiroshi;
Endo, Masayuki;
Matsumura, Shigeyoshi;
Ikawa, Yoshiya;
Endoh, Tamaki;
Huang, Chih-Ching

Publication type:

Article

Re-creating an RNA world.

Published in:

Cellular & Molecular Life Sciences, 2006, v. 63, n. 11, p. 1278, doi. 10.1007/s00018-006-6047-1

By:

Müller, U. F.

Publication type:

Article

Suppressing Kaposi's Sarcoma-Associated Herpesvirus Lytic Gene Expression and Replication by RNase P Ribozyme.

Published in:

Molecules, 2023, v. 28, n. 8, p. 3619, doi. 10.3390/molecules28083619

By:

Liu, Yujun;
Chen, Yuan-Chuan;
Yan, Bin;
Liu, Fenyong

Publication type:

Article

Characterization of the initiation sites of both polarity strands of a viroid RNA reveals a motif conserved in sequence and structure.

Published in:

EMBO Journal, 2000, v. 19, n. 11, p. 2662, doi. 10.1093/emboj/19.11.2662

By:

Navarro, José-Antonio;
Flores, Ricardo

Publication type:

Article

Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer.

Published in:

EMBO Journal, 1998, v. 17, n. 8, p. 2378, doi. 10.1093/emboj/17.8.2378

By:

Walter, Nils G.;
Hampel, Ken J.;
Brown, Kirk M.;
Burke, John M.

Publication type:

Article

Identification of structural elements critical for inter-domain interactions in a group II self-splicing intron.

Published in:

EMBO Journal, 1997, v. 16, n. 10, p. 2945, doi. 10.1093/emboj/16.10.2945

By:

Jestin, Jean-Luc;
Dème, Elise;
Jacquier, Alian

Publication type:

Article

Continuous In Vitro Evolution of Ribozymes That Operate Under Conditions of Extreme pH.

Published in:

Journal of Molecular Evolution, 2003, v. 57, n. 3, p. 292, doi. 10.1007/s00239-003-2480-z

By:

Kühne, Henriette;
Joyce, Gerald F.

Publication type:

Article

Modification and Application of Self-Trimming Hairpin Ribozymes to Targeting a Transcribed RNA In Vitro1.

Published in:

Journal of Biochemistry, 1998, v. 124, n. 5, p. 986, doi. 10.1093/oxfordjournals.jbchem.a022217

By:

Komatsu, Yasuo;
Shirai, Miho;
Ohtsuka, Eiko

Publication type:

Article

Trans-Activation of the Tetrahymena Ribozyme by Its P2-2.1 Domains1.

Published in:

Journal of Biochemistry, 1998, v. 123, n. 3, p. 528, doi. 10.1093/oxfordjournals.jbchem.a021968

By:

Ikawa, Yoshiya;
Shiraishi, Hideaki;
Inoue, Tan

Publication type:

Article

In vitro selection of adenine-dependent ribozyme against Tpl2/Cot oncogene.

Published in:

FEBS Journal, 2009, v. 276, n. 1, p. 303, doi. 10.1111/j.1742-4658.2008.06780.x

By:

Yan-Li Li;
Vergne, Jacques;
Torchet, Claire;
Maurel, Marie-Christine

Publication type:

Article

Sequence elements outside the catalytic core of natural hairpin ribozymes modulate the reactions differentially.

Published in:

Biological Chemistry, 2011, v. 392, n. 7, p. 593, doi. 10.1515/BC.2011.071

By:

Bajaj, Preeti;
Steger, Gerhard;
Hammann, Christian

Publication type:

Article

Idiosyncratic cleavage and ligation activity of individual hammerhead ribozymes and core sequence variants thereof.

Published in:

Biological Chemistry, 2007, v. 388, n. 7, p. 737, doi. 10.1515/BC.2007.065

By:

Przybilski, Rita;
Hammann, Christian

Publication type:

Article

Hammerhead Ribozymes in Archaeal Genomes: A Computational Hunt.

Published in:

Interdisciplinary Sciences: Computational Life Sciences, 2017, v. 9, n. 2, p. 192, doi. 10.1007/s12539-016-0141-3

By:

Gupta, Angela;
Swati, D.

Publication type:

Article

In-Plant Persistence and Systemic Transport of Nicotiana benthamiana Retrozyme RNA.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 22, p. 13890, doi. 10.3390/ijms232213890

By:

Lezzhov, Alexander A.;
Tolstyko, Eugene A.;
Atabekova, Anastasia K.;
Chergintsev, Denis A.;
Morozov, Sergey Y.;
Solovyev, Andrey G.

Publication type:

Article

Ribozymes: A Modern Tool in Medicine.

Published in:

Journal of Biomedical Science, 2003, v. 10, n. 5, p. 457, doi. 10.1007/BF02256107

By:

Khan, Asad U.;
Lal, Sunil K.

Publication type:

Article