Works matching Cancer genes

Results: 5000

Improving cancer driver gene identification using multi-task learning on graph convolutional network.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab432

By:

Peng, Wei;
Tang, Qi;
Dai, Wei;
Chen, Tielin

Publication type:

Article

COSMIC Cancer Gene Census 3D database: understanding the impacts of mutations on cancer targets.

Published in:

Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab220

By:

Alsulami, Ali F;
Torres, Pedro H M;
Moghul, Ismail;
Arif, Sheikh Mohammed;
Chaplin, Amanda K;
Vedithi, Sundeep Chaitanya;
Blundell, Tom L

Publication type:

Article

How germline genes promote malignancy in cancer cells.

Published in:

BioEssays, 2023, v. 45, n. 1, p. 1, doi. 10.1002/bies.202200112

By:

Bruggeman, Jan Willem;
Koster, Jan;
van Pelt, Ans M. M.;
Speijer, Dave;
Hamer, Geert

Publication type:

Article

PF-PSS: a double-layer parallel embedded feature selection method for cancer gene expression data.

Published in:

Journal of Big Data, 2025, v. 12, n. 1, p. 1, doi. 10.1186/s40537-025-01144-3

By:

Song, Yu-Wei;
Wang, Jie-Sheng;
Qi, Yu-Liang;
Wang, Yu-Cai;
Li, Shi;
Song, Hao-Ming;
Shang-Guan, Yi-Peng

Publication type:

Article

A feature extraction framework for discovering pan‐cancer driver genes based on multi‐omics data.

Published in:

Quantitative Biology, 2024, v. 12, n. 2, p. 173, doi. 10.1002/qub2.40

By:

Xue, Xiaomeng;
Li, Feng;
Shang, Junliang;
Dai, Lingyun;
Ge, Daohui;
Ren, Qianqian

Publication type:

Article

Identification of Cancer Driver Genes by Integrating Multiomics Data with Graph Neural Networks.

Published in:

Metabolites (2218-1989), 2023, v. 13, n. 3, p. 339, doi. 10.3390/metabo13030339

By:

Song, Hongzhi;
Yin, Chaoyi;
Li, Zhuopeng;
Feng, Ke;
Cao, Yangkun;
Gu, Yujie;
Sun, Huiyan

Publication type:

Article

Endometrial Cancer-Adjacent Tissues Express Higher Levels of Cancer-Promoting Genes than the Matched Tumors.

Published in:

Genes, 2022, v. 13, n. 9, p. 1611, doi. 10.3390/genes13091611

By:

Kulinczak, Mariusz;
Sromek, Maria;
Panek, Grzegorz;
Zakrzewska, Klara;
Lotocka, Renata;
Szafron, Lukasz Michal;
Chechlinska, Magdalena;
Siwicki, Jan Konrad

Publication type:

Article

Use of Publication Dynamics to Distinguish Cancer Genes and Bystander Genes.

Published in:

Genes, 2022, v. 13, n. 7, p. 1105, doi. 10.3390/genes13071105

By:

Bányai, László;
Trexler, Mária;
Patthy, László

Publication type:

Article

Literature Review of BARD1 as a Cancer Predisposing Gene with a Focus on Breast and Ovarian Cancers.

Published in:

Genes, 2020, v. 11, n. 8, p. 856, doi. 10.3390/genes11080856

By:

Alenezi, Wejdan M.;
Fierheller, Caitlin T.;
Recio, Neil;
Tonin, Patricia N.

Publication type:

Article

Haplotype patterns in cancer-related genes with long-range linkage disequilibrium: no evidence of association with breast cancer or positive selection.

Published in:

European Journal of Human Genetics, 2008, v. 16, n. 2, p. 252, doi. 10.1038/sj.ejhg.5201953

By:

Ribas, Gloria;
Milne, Roger L;
Gonzalez-Neira, Anna;
Benítez, Javier

Publication type:

Article

Alu distribution and mutation types of cancer genes.

Published in:

BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-157

By:

Zhang, Wensheng;
Edwards, Andrea;
Fan, Wei;
Deininger, Prescott;
Zhang, Kun

Publication type:

Article

Exploring gene-patient association to identify personalized cancer driver genes by linear neighborhood propagation.

Published in:

BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05662-4

By:

Huang, Yiran;
Chen, Fuhao;
Sun, Hongtao;
Zhong, Cheng

Publication type:

Article

Exploring gene-patient association to identify personalized cancer driver genes by linear neighborhood propagation.

Published in:

BMC Bioinformatics, 2024, v. 25, p. 1, doi. 10.1186/s12859-024-05662-4

By:

Huang, Yiran;
Chen, Fuhao;
Sun, Hongtao;
Zhong, Cheng

Publication type:

Article

Identifying cancer driver genes based on multi-view heterogeneous graph convolutional network and self-attention mechanism.

Published in:

BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05140-3

By:

Peng, Wei;
Wu, Rong;
Dai, Wei;
Yu, Ning

Publication type:

Article

Leveraging hybrid 1D-CNN and RNN approach for classification of brain cancer gene expression.

Published in:

Complex & Intelligent Systems, 2024, v. 10, n. 6, p. 7605, doi. 10.1007/s40747-024-01555-4

By:

Afify, Heba M.;
Mohammed, Kamel K.;
Hassanien, Aboul Ella

Publication type:

Article

Systematic interactome mapping of acute lymphoblastic leukemia cancer gene products reveals EXT-1 tumor suppressor as a Notch1 and FBWX7 common interactor.

Published in:

2016

By:

Daakour, Sarah;
Hajingabo, Leon Juvenal;
Kerselidou, Despoina;
Devresse, Aurelie;
Kettmann, Richard;
Simonis, Nicolas;
Dequiedt, Franck;
Twizere, Jean-Claude

Publication type:

journal article

Intersection Approach for Prediction of Cancer-Causing Genes in the Transcriptional Regulatory Network.

Published in:

International Journal of Information & Communication Technology Research (2251-6107), 2022, v. 14, n. 1, p. 57, doi. 10.52547/itrc.14.1.57

By:

Lashgari, Sajedeh;
Teimourpour, Babak;
Akhavan-Safar, Mostafa

Publication type:

Article

Dynamic time-varying transfer function for cancer gene expression data feature selection problem.

Published in:

Journal of Big Data, 2025, v. 12, n. 1, p. 1, doi. 10.1186/s40537-025-01105-w

By:

Song, Hao-Ming;
Wang, Yu-Cai;
Wang, Jie-Sheng;
Song, Yu-Wei;
Li, Shi;
Qi, Yu-Liang;
Hou, Jia-Ning

Publication type:

Article

Mutation characteristics of cancer susceptibility genes in Chinese ovarian cancer patients.

Published in:

Frontiers in Oncology, 2024, p. 01, doi. 10.3389/fonc.2024.1395818

By:

Jie Wang;
Kaiyu Fu;
Mengpei Zhang;
Lunggang Liang;
Meng Ni;
Hai-Xi Sun;
Rutie Yin;
Meifang Tang

Publication type:

Article

Preparation of the standard cell lines for reference mutations in cancer gene-panels by genome editing in HEK 293 T/17 cells.

Published in:

Genes & Environment, 2020, v. 42, n. 1, p. 1, doi. 10.1186/s41021-020-0147-2

By:

Suzuki, Takayoshi;
Tsukumo, Yoshinori;
Furihata, Chie;
Naito, Mikihiko;
Kohara, Arihiro

Publication type:

Article

Systematic Review of Prediction of Cancer Driver Genes with the Application of Graph Neural Networks.

Published in:

2024

By:

Qureshi, Noor Uddin;
Amjad, Usman;
Hassan, Saima;
Saleem, Kashif

Publication type:

Literature Review

Pan-cancer detection of driver genes at the single-patient resolution.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00830-0

By:

Nulsen, Joel;
Misetic, Hrvoje;
Yau, Christopher;
Ciccarelli, Francesca D.

Publication type:

Article

Whole genome sequencing identifies rare germline variants enriched in cancer related genes in first degree relatives of familial pancreatic cancer patients.

Published in:

Clinical Genetics, 2021, v. 100, n. 5, p. 551, doi. 10.1111/cge.14038

By:

Tan, Ming;
Brusgaard, Klaus;
Gerdes, Anne‐Marie;
Mortensen, Michael Bau;
Detlefsen, Sönke;
Schaffalitzky de Muckadell, Ove B.;
Joergensen, Maiken Thyregod

Publication type:

Article

Cancer gene identification using graph centrality.

Published in:

Current Science (00113891), 2013, v. 105, n. 8, p. 1143

By:

Izudheen, Sminu;
Mathew, Sheena

Publication type:

Article

Leader gene identification for digestive system cancers based on human subcellular location and cancer-related characteristics in protein-protein interaction networks.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.919210

By:

Hongwei Chen;
Zherou Rong;
Luanfeng Ge;
Hongzheng Yu;
Chao Li;
Manyi Xu;
Zihan Zhang;
Junjie Lv;
Yuehan He;
Wan Li;
Lina Chen

Publication type:

Article

Meta-analysis of microarray datasets identify several chromosome segregation-related cancer/testis genes potentially contributing to anaplastic thyroid carcinoma.

Published in:

PeerJ, 2018, p. 1, doi. 10.7717/peerj.5822

By:

Mu Liu;
Yu-lu Qiu;
Tong Jin;
Yin Zhou;
Zhi-yuan Mao;
Yong-jie Zhang

Publication type:

Article

Cancer gene identification through integrating causal prompting large language model with omics data–driven causal inference.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf113

By:

Zeng, Haolong;
Yin, Chaoyi;
Chai, Chunyang;
Wang, Yuezhu;
Dai, Qi;
Sun, Huiyan

Publication type:

Article

Towards simplified graph neural networks for identifying cancer driver genes in heterophilic networks.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae691

By:

Li, Xingyi;
Xu, Jialuo;
Li, Junming;
Gu, Jia;
Shang, Xuequn

Publication type:

Article

Multiview representation learning for identification of novel cancer genes and their causative biological mechanisms.

Published in:

Briefings in Bioinformatics, 2024, v. 25, n. 5, p. 1, doi. 10.1093/bib/bbae418

By:

Yang, Jianye;
Fu, Haitao;
Xue, Feiyang;
Li, Menglu;
Wu, Yuyang;
Yu, Zhanhui;
Luo, Haohui;
Gong, Jing;
Niu, Xiaohui;
Zhang, Wen

Publication type:

Article

SMG: self-supervised masked graph learning for cancer gene identification.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 6, p. 1, doi. 10.1093/bib/bbad406

By:

Cui, Yan;
Wang, Zhikang;
Wang, Xiaoyu;
Zhang, Yiwen;
Zhang, Ying;
Pan, Tong;
Zhang, Zhe;
Li, Shanshan;
Guo, Yuming;
Akutsu, Tatsuya;
Song, Jiangning

Publication type:

Article

PhenoDriver: interpretable framework for studying personalized phenotype-associated driver genes in breast cancer.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 5, p. N.PAG, doi. 10.1093/bib/bbad291

By:

Li, Yan;
Zhang, Shao-Wu;
Xie, Ming-Yu;
Zhang, Tong

Publication type:

Article

A novel heterophilic graph diffusion convolutional network for identifying cancer driver genes.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 3, p. 1, doi. 10.1093/bib/bbad137

By:

Zhang, Tong;
Zhang, Shao-Wu;
Xie, Ming-Yu;
Li, Yan

Publication type:

Article

Machine learning methods for prediction of cancer driver genes: a survey paper.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 3, p. 1, doi. 10.1093/bib/bbac062

By:

Andrades, Renan;
Recamonde-Mendoza, Mariana

Publication type:

Article

Comprehensive evaluation of computational methods for predicting cancer driver genes.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbab548

By:

Shi, Xiaohui;
Teng, Huajing;
Shi, Leisheng;
Bi, Wenjian;
Wei, Wenqing;
Mao, Fengbiao;
Sun, Zhongsheng

Publication type:

Article

Similarity of markers identified from cancer gene expression studies: observations from GEO.

Published in:

Briefings in Bioinformatics, 2014, v. 15, n. 5, p. 671, doi. 10.1093/bib/bbt044

By:

Shi, Xingjie;
Shen, Shihao;
Liu, Jin;
Huang, Jian;
Zhou, Yong;
Ma, Shuangge

Publication type:

Article

Germline Structural Variations in Cancer Predisposition Genes.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.634217

By:

Pócza, Tímea;
Grolmusz, Vince Kornél;
Papp, János;
Butz, Henriett;
Patócs, Attila;
Bozsik, Anikó

Publication type:

Article

An Efficient and Easy-to-Use Network-Based Integrative Method of Multi-Omics Data for Cancer Genes Discovery.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.613033

By:

Wei, Ting;
Fa, Botao;
Luo, Chengwen;
Johnston, Luke;
Zhang, Yue;
Yu, Zhangsheng

Publication type:

Article

Tumor Signature Analysis Implicates Hereditary Cancer Genes in Endometrial Cancer Development.

Published in:

Cancers, 2021, v. 13, n. 8, p. 1762, doi. 10.3390/cancers13081762

By:

Kondrashova, Olga;
Shamsani, Jannah;
O'Mara, Tracy A.;
Newell, Felicity;
Reed, Amy E. McCart;
Lakhani, Sunil R.;
Kirk, Judy;
Pearson, John V.;
Waddell, Nicola;
Spurdle, Amanda B.;
Wong, David

Publication type:

Article

Yield of targeted genotyping for the recurring pathogenic variants in cancer susceptibility genes in a healthy, multiethnic Israeli population.

Published in:

Cancer (0008543X), 2021, v. 127, n. 19, p. 3599, doi. 10.1002/cncr.33560

By:

Bernstein‐Molho, Rinat;
Galmor, Lee;
Laitman, Yael;
Segev, Shlomo;
Friedman, Eitan

Publication type:

Article

Establishment of a comprehensive set of fact sheets for cancer predisposition genes for medical oncologists practicing cancer genome profiling.

Published in:

International Journal of Clinical Oncology, 2025, v. 30, n. 5, p. 827, doi. 10.1007/s10147-025-02746-w

By:

Matsukawa, Manami;
Tomozawa, Chikako;
Nakamura, Yoshiaki;
Fujisawa, Takao;
Kimura, Kaori;
Hiraoka, Yumie;
Yamashita, Riu;
Kosugi, Shinji;
Sakurai, Akihiro;
Imoto, Issei;
Nishigaki, Masakazu;
Hirata, Makoto;
Kuwata, Takeshi;
Yoshino, Takayuki

Publication type:

Article

Identification and Validation of Ikaros (IKZF1) as a Cancer Driver Gene for Marek's Disease Virus-Induced Lymphomas.

Published in:

Microorganisms, 2022, v. 10, n. 2, p. N.PAG, doi. 10.3390/microorganisms10020401

By:

Steep, Alec;
Hildebrandt, Evin;
Xu, Hongen;
Hearn, Cari;
Frishman, Dmitrij;
Niikura, Masahiro;
Dunn, John R.;
Kim, Taejoong;
Conrad, Steven J.;
Muir, William M.;
Cheng, Hans H.

Publication type:

Article

Large-Scale Transcriptome Analysis Identified a Novel Cancer Driver Genes Signature for Predicting the Prognostic of Patients With Hepatocellular Carcinoma.

Published in:

Frontiers in Pharmacology, 2021, v. 12, p. 1, doi. 10.3389/fphar.2021.638622

By:

Li, Gao;
Du, Xiaowei;
Wu, Xiaoxiong;
Wu, Shen;
Zhang, Yufei;
Xu, Jing;
Wang, Hao;
Chen, Tingsong

Publication type:

Article

Identification of a Gene Expression Signature Common to Distinct Cancer Pathways.

Published in:

Cancer Informatics, 2012, n. 11, p. 139, doi. 10.4137/CIN.S9542

By:

Fankhauser, Niklaus;
Cima, Igor;
Wild, Peter;
Krek, Wilhelm

Publication type:

Article

MiRNA–gene network embedding for predicting cancer driver genes.

Published in:

Briefings in Functional Genomics, 2023, v. 22, n. 4, p. 341, doi. 10.1093/bfgp/elac059

By:

Peng, Wei;
Wu, Rong;
Dai, Wei;
Ning, Yu;
Fu, Xiaodong;
Liu, Li;
Liu, Lijun

Publication type:

Article

Systematic analysis of Mendelian disease-associated gene variants reveals new classes of cancer-predisposing genes.

Published in:

Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01252-w

By:

Song, Seulki;
Koh, Youngil;
Kim, Seokhyeon;
Lee, Sang Mi;
Kim, Hyun Uk;
Ko, Jung Min;
Lee, Se-Hoon;
Yoon, Sung-Soo;
Park, Solip

Publication type:

Article

DriverRWH: discovering cancer driver genes by random walk on a gene mutation hypergraph.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04788-7

By:

Wang, Chenye;
Shi, Junhan;
Cai, Jiansheng;
Zhang, Yusen;
Zheng, Xiaoqi;
Zhang, Naiqian

Publication type:

Article

Co-expression in tissue-specific gene networks links genes in cancer-susceptibility loci to known somatic driver genes.

Published in:

BMC Medical Genomics, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s12920-024-01941-4

By:

Urzúa-Traslaviña, Carlos G.;
van Lieshout, Tijs;
Boulogne, Floranne;
Domanegg, Kevin;
Zidan, Mahmoud;
Bakker, Olivier B.;
Claringbould, Annique;
de Ridder, Jeroen;
Zwart, Wilbert;
Westra, Harm-Jan;
Deelen, Patrick;
Franke, Lude

Publication type:

Article

SSCI: Self-Supervised Deep Learning Improves Network Structure for Cancer Driver Gene Identification.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 19, p. 10351, doi. 10.3390/ijms251910351

By:

Xu, Jialuo;
Hao, Jun;
Liao, Xingyu;
Shang, Xuequn;
Li, Xingyi

Publication type:

Article

Accurate Prediction of Cancer Prognosis by Exploiting Patient-Specific Cancer Driver Genes.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 7, p. 6445, doi. 10.3390/ijms24076445

By:

Lee, Suyeon;
Jung, Heewon;
Park, Jiwoo;
Ahn, Jaegyoon

Publication type:

Article

Bacteriophage-Mediated Cancer Gene Therapy.

Published in:

2022

By:

Petrov, Gleb;
Dymova, Maya;
Richter, Vladimir

Publication type:

Literature Review