Works matching Ancient DNA

Results: 2758

An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole‐genome sequencing data.

Published in:

Ecology & Evolution (20457758), 2021, v. 11, n. 1, p. 390, doi. 10.1002/ece3.7056

By:

Xu, Wenhao;
Lin, Yu;
Zhao, Keliang;
Li, Haimeng;
Tian, Yinping;
Ngatia, Jacob Njaramba;
Ma, Yue;
Sahu, Sunil Kumar;
Guo, Huabing;
Guo, Xiaosen;
Xu, Yan Chun;
Liu, Huan;
Kristiansen, Karsten;
Lan, Tianming;
Zhou, Xinying

Publication type:

Article

沉积植物古DNA在第四纪植被重建中的应用.

Published in:

Advances in Earth Science (1001-8166), 2024, v. 39, n. 8, p. 801, doi. 10.11867/j.issn.1001-8166.2024.064

By:

徐海涛;
李泉;
赵艳

Publication type:

Article

What Can Ancient DNA Bring to the Identification of Fallen Australian War Casualties? Pioneering Methodologies at Queensland-based Ancient DNA Facilities.

Published in:

Proceedings of the Royal Society of Queensland, 2022, v. 131, p. 155, doi. 10.53060/prsq.2022-07

By:

Wasef, Sally;
Bar, Ido;
Mitchell, Natasha;
Wright, Kirsty

Publication type:

Article

Solving the two-decades-old murder case through joint application of ZooMS and ancient DNA approaches.

Published in:

International Journal of Legal Medicine, 2023, v. 137, n. 2, p. 319, doi. 10.1007/s00414-022-02944-5

By:

Xu, Yang;
Wang, Naihui;
Gao, Shizhu;
Li, Chunxiang;
Ma, Pengcheng;
Yang, Shasha;
Jiang, Hai;
Shi, Shoujin;
Wu, Yanhua;
Zhang, Quanchao;
Cui, Yinqiu

Publication type:

Article

New Insights Into Mitochondrial DNA Reconstruction and Variant Detection in Ancient Samples.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.619950

By:

Diroma, Maria Angela;
Modi, Alessandra;
Lari, Martina;
Sineo, Luca;
Caramelli, David;
Vai, Stefania

Publication type:

Article

euka : Robust tetrapodic and arthropodic taxa detection from modern and ancient environmental DNA using pangenomic reference graphs.

Published in:

Methods in Ecology & Evolution, 2023, v. 14, n. 11, p. 2717, doi. 10.1111/2041-210X.14214

By:

Vogel, Nicola Alexandra;
Rubin, Joshua Daniel;
Swartz, Mikkel;
Vlieghe, Juliette;
Sackett, Peter Wad;
Pedersen, Anders Gorm;
Pedersen, Mikkel Winther;
Renaud, Gabriel

Publication type:

Article

A High‐Throughput Ancient DNA Extraction Method for Large‐Scale Sample Screening.

Published in:

Molecular Ecology Resources, 2025, v. 25, n. 4, p. 1, doi. 10.1111/1755-0998.14077

By:

Gilardet, Alexandre;
Lord, Edana;
García, Gonzalo Oteo;
Xenikoudakis, Georgios;
Douka, Katerina;
Wooller, Matthew J.;
Rowe, Timothy;
Martin, Michael D.;
Le Moullec, Mathilde;
Anisimov, Michail;
Heintzman, Peter D.;
Dalén, Love

Publication type:

Article

Revisiting the Briggs Ancient DNA Damage Model: A Fast Maximum Likelihood Method to Estimate Post‐Mortem Damage.

Published in:

Molecular Ecology Resources, 2025, v. 25, n. 1, p. 1, doi. 10.1111/1755-0998.14029

By:

Zhao, Lei;
Henriksen, Rasmus Amund;
Ramsøe, Abigail;
Nielsen, Rasmus;
Korneliussen, Thorfinn Sand

Publication type:

Article

Assessing the impact of USER‐treatment on hyRAD capture applied to ancient DNA.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 6, p. 2262, doi. 10.1111/1755-0998.13619

By:

Suchan, Tomasz;
Chauvey, Lorelei;
Poullet, Marine;
Tonasso‐Calvière, Laure;
Schiavinato, Stéphanie;
Clavel, Pierre;
Clavel, Benoit;
Lepetz, Sébastien;
Seguin‐Orlando, Andaine;
Orlando, Ludovic;
Calvignac‐Spencer, Sebastien

Publication type:

Article

Quantifying and reducing cross‐contamination in single‐ and multiplex hybridization capture of ancient DNA.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 6, p. 2196, doi. 10.1111/1755-0998.13607

By:

Zavala, Elena I.;
Aximu‐Petri, Ayinuer;
Richter, Julia;
Nickel, Birgit;
Vernot, Benjamin;
Meyer, Matthias

Publication type:

Article

Successful application of ancient DNA extraction and library construction protocols to museum wet collection specimens.

Published in:

Molecular Ecology Resources, 2021, v. 21, n. 7, p. 2299, doi. 10.1111/1755-0998.13433

By:

Straube, Nicolas;
Lyra, Mariana L.;
Paijmans, Johanna L. A.;
Preick, Michaela;
Basler, Nikolas;
Penner, Johannes;
Rödel, Mark‐Oliver;
Westbury, Michael V.;
Haddad, Célio F. B.;
Barlow, Axel;
Hofreiter, Michael

Publication type:

Article

Hybridization capture of larch (Larix Mill.) chloroplast genomes from sedimentary ancient DNA reveals past changes of Siberian forest.

Published in:

Molecular Ecology Resources, 2021, v. 21, n. 3, p. 801, doi. 10.1111/1755-0998.13311

By:

Schulte, Luise;
Bernhardt, Nadine;
Stoof‐Leichsenring, Kathleen;
Zimmermann, Heike H.;
Pestryakova, Luidmila A.;
Epp, Laura S.;
Herzschuh, Ulrike

Publication type:

Article

The case of an arctic wild ass highlights the utility of ancient DNA for validating problematic identifications in museum collections.

Published in:

Molecular Ecology Resources, 2020, v. 20, n. 5, p. 1182, doi. 10.1111/1755-0998.13130

By:

Vershinina, Alisa O.;
Kapp, Joshua D.;
Baryshnikov, Gennady F.;
Shapiro, Beth

Publication type:

Article

Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies.

Published in:

Molecular Ecology Resources, 2020, v. 20, n. 5, p. 1171, doi. 10.1111/1755-0998.13009

By:

van der Valk, Tom;
Vezzi, Francesco;
Ormestad, Mattias;
Dalén, Love;
Guschanski, Katerina

Publication type:

Article

An optimized method for the extraction of ancient eukaryote DNA from marine sediments.

Published in:

Molecular Ecology Resources, 2020, v. 20, n. 4, p. 906, doi. 10.1111/1755-0998.13162

By:

Armbrecht, Linda;
Herrando‐Pérez, Salvador;
Eisenhofer, Raphael;
Hallegraeff, Gustaaf M.;
Bolch, Christopher J. S.;
Cooper, Alan

Publication type:

Article

Optimized DNA sampling of ancient bones using Computed Tomography scans.

Published in:

Molecular Ecology Resources, 2018, v. 18, n. 6, p. 1196, doi. 10.1111/1755-0998.12911

By:

Alberti, Federica;
Gonzalez, Javier;
Paijmans, Johanna L. A.;
Basler, Nikolas;
Preick, Michaela;
Henneberger, Kirstin;
Trinks, Alexandra;
Rabeder, Gernot;
Conard, Nicholas J.;
Münzel, Susanne C.;
Joger, Ulrich;
Fritsch, Guido;
Hildebrandt, Thomas;
Hofreiter, Michael;
Barlow, Axel

Publication type:

Article

Ancient DNA analysis identifies marine mollusc shells as new metagenomic archives of the past.

Published in:

Molecular Ecology Resources, 2017, v. 17, n. 5, p. 835, doi. 10.1111/1755-0998.12679

By:

Der Sarkissian, Clio;
Pichereau, Vianney;
Dupont, Catherine;
Ilsøe, Peter C.;
Perrigault, Mickael;
Butler, Paul;
Chauvaud, Laurent;
Eiríksson, Jón;
Scourse, James;
Paillard, Christine;
Orlando, Ludovic

Publication type:

Article

Combined hybridization capture and shotgun sequencing for ancient DNA analysis of extinct wild and domestic dromedary camel.

Published in:

Molecular Ecology Resources, 2017, v. 17, n. 2, p. 300, doi. 10.1111/1755-0998.12551

By:

Mohandesan, Elmira;
Speller, Camilla F.;
Peters, Joris;
Uerpmann, Hans‐Peter;
Uerpmann, Margarethe;
De Cupere, Bea;
Hofreiter, Michael;
Burger, Pamela A.

Publication type:

Article

Empirical calibrated radiocarbon sampler: a tool for incorporating radiocarbon-date and calibration error into Bayesian phylogenetic analyses of ancient DNA.

Published in:

Molecular Ecology Resources, 2015, v. 15, n. 1, p. 81, doi. 10.1111/1755-0998.12295

By:

Molak, Martyna;
Suchard, Marc A.;
Ho, Simon Y. W.;
Beilman, David W.;
Shapiro, Beth

Publication type:

Article

Using ancient DNA to enhance museum collections: a case study of rare kiwi ( Apteryx spp.) specimens.

Published in:

Journal of the Royal Society of New Zealand, 2013, v. 43, n. 3, p. 119, doi. 10.1080/03036758.2012.732585

By:

Shepherd, LD;
Tennyson, AJD;
Lambert, DM

Publication type:

Article

Post‐glacial range revolutions in South European hares (Lepus spp.): Insights from ancient DNA and ecological niche modelling.

Published in:

Journal of Biogeography, 2018, v. 45, n. 12, p. 2609, doi. 10.1111/jbi.13454

By:

Lado, Sara;
Farelo, Liliana;
Melo‐Ferreira, José;
Forest, Vianney;
Acevedo, Pelayo;
Dalén, Love

Publication type:

Article

Subspecies dynamics in space and time: A study of the red deer complex using ancient and modern DNA and morphology.

Published in:

Journal of Biogeography, 2018, v. 45, n. 2, p. 367, doi. 10.1111/jbi.13124

By:

Meiri, Meirav;
Kosintsev, Pavel;
Conroy, Keziah;
Meiri, Shai;
Barnes, Ian;
Lister, Adrian

Publication type:

Article

Ancient DNA analysis of Indigenous rockfish use on the Pacific Coast: Implications for marine conservation areas and fisheries management.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0192716

By:

Rodrigues, Antonia T.;
McKechnie, Iain;
Yang, Dongya Y.

Publication type:

Article

Ancient DNA analysis of elite nomadic warrior from Chinge-Tey I funerary commemorative complex in the "Valley of the Kings", Tuva.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11361-y

By:

Nedoluzhko, Artem;
Vergasova, Ekaterina;
Sharko, Fedor;
Agapitova, Natalia;
Kharitonov, Dmitry;
Sukhanova, Xenia;
Pushkina, Olga;
Pankova, Svetlana;
Slobodova, Natalia;
Boulygina, Eugenia;
Plotnikov, Nikolay;
Kim, Anna;
Uchaneva, Evgeniia;
Pogodina, Nadezhda;
Ilinskaya, Anna;
Rakitko, Alexander;
Chugunov, Konstantin;
Ilinsky, Valery

Publication type:

Article

Unraveling the ancient fungal DNA from the Iceman gut.

Published in:

BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-11123-2

By:

Oskolkov, Nikolay;
Sandionigi, Anna;
Götherström, Anders;
Canini, Fabiana;
Turchetti, Benedetta;
Zucconi, Laura;
Mimmo, Tanja;
Buzzini, Pietro;
Borruso, Luigimaria

Publication type:

Article

AntCaller: an accurate variant caller incorporating ancient DNA damage.

Published in:

Molecular Genetics & Genomics, 2017, v. 292, n. 6, p. 1419, doi. 10.1007/s00438-017-1358-5

By:

Zhou, Boyan;
Wen, Shaoqing;
Wang, Lingxiang;
Jin, Li;
Li, Hui;
Zhang, Hong

Publication type:

Article

Ancient DNA for the Archaeologist: The Future of African Research.

Published in:

African Archaeological Review, 2013, v. 30, n. 1, p. 21, doi. 10.1007/s10437-013-9127-2

By:

Campana, Michael;
Bower, Mim;
Crabtree, Pam

Publication type:

Article

Working Ethically with Ancient DNA from Composites in the United States.

Published in:

Advances in Archaeological Practice, 2024, v. 12, n. 2, p. 86, doi. 10.1017/aap.2023.32

By:

Johnson, Taryn;
Thakar, Heather B.;
Watkins, Joe;
Linderholm, Anna

Publication type:

Article

Improved recovery of ancient DNA from subfossil wood – application to the world's oldest Late Glacial pine forest.

Published in:

New Phytologist, 2018, v. 217, n. 4, p. 1737, doi. 10.1111/nph.14935

By:

Lendvay, Bertalan;
Hartmann, Martin;
Brodbeck, Sabine;
Nievergelt, Daniel;
Reinig, Frederick;
Zoller, Stefan;
Parducci, Laura;
Gugerli, Felix;
Büntgen, Ulf;
Sperisen, Christoph

Publication type:

Article

Ancient plant DNA in lake sediments.

Published in:

New Phytologist, 2017, v. 214, n. 3, p. 924, doi. 10.1111/nph.14470

By:

Parducci, Laura;
Bennett, Keith D.;
Ficetola, Gentile Francesco;
Alsos, Inger Greve;
Suyama, Yoshihisa;
Wood, Jamie R.;
Pedersen, Mikkel Winther

Publication type:

Article

Ancient plant DNA: review and prospects.

Published in:

New Phytologist, 2005, v. 166, n. 2, p. 409, doi. 10.1111/j.1469-8137.2005.01360.x

By:

Gugerli, Felix;
Parducci, Laura;
Petit, Rémy J.

Publication type:

Article

Development and Optimization of a Silica Column-Based Extraction Protocol for Ancient DNA.

Published in:

Genes, 2022, v. 13, n. 4, p. 687, doi. 10.3390/genes13040687

By:

Dehasque, Marianne;
Pečnerová, Patrícia;
Kempe Lagerholm, Vendela;
Ersmark, Erik;
Danilov, Gleb K.;
Mortensen, Peter;
Vartanyan, Sergey;
Dalén, Love

Publication type:

Article

Ancient DNA Methods Improve Forensic DNA Profiling of Korean War and World War II Unknowns.

Published in:

Genes, 2022, v. 13, n. 1, p. 129, doi. 10.3390/genes13010129

By:

Zavala, Elena I.;
Thomas, Jacqueline Tyler;
Sturk-Andreaggi, Kimberly;
Daniels-Higginbotham, Jennifer;
Meyers, Kerriann K.;
Barrit-Ross, Suzanne;
Aximu-Petri, Ayinuer;
Richter, Julia;
Nickel, Birgit;
Berg, Gregory E.;
McMahon, Timothy P.;
Meyer, Matthias;
Marshall, Charla

Publication type:

Article

Ancient DNA Resolves the History of Tetragnatha (Araneae, Tetragnathidae) Spiders on Rapa Nui.

Published in:

Genes, 2017, v. 8, n. 12, p. 403, doi. 10.3390/genes8120403

By:

Cotoras, Darko D.;
Murray, Gemma G. R.;
Kapp, Joshua;
Gillespie, Rosemary G.;
Griswold, Charles;
Simison, W. Brian;
Green, Richard E.;
Shapiro, Beth

Publication type:

Article

Time to Spread Your Wings: A Review of the Avian Ancient DNA Field.

Published in:

Genes, 2017, v. 8, n. 7, p. 184, doi. 10.3390/genes8070184

By:

Grealy, Alicia;
Rawlence, Nicolas J.;
Bunce, Michael

Publication type:

Article

Combining contemporary and ancient DNA in population genetic and phylogeographical studies.

Published in:

Molecular Ecology Resources, 2010, v. 10, n. 5, p. 760, doi. 10.1111/j.1755-0998.2010.02895.x

By:

NAVASCUÉS, MIGUEL;
DEPAULIS, FRANTZ;
EMERSON, BRENT C.

Publication type:

Article

A rapid column-based ancient DNA extraction method for increased sample throughput.

Published in:

Molecular Ecology Resources, 2010, v. 10, n. 4, p. 677, doi. 10.1111/j.1755-0998.2009.02824.x

By:

ROHLAND, NADIN;
SIEDEL, HEIKE;
HOFREITER, MICHAEL

Publication type:

Article

ANCIENT DNA ANALYSIS AND ITS PROBABLE APPLICATIONS IN FORENSIC ANTHROPOLOGY.

Published in:

Journal of Punjab Academy of Forensic Medicine & Toxicology, 2014, v. 14, n. 1, p. 43

By:

Singh, J.;
Garg, A.

Publication type:

Article

Agricultural origins: the evidence of modern and ancient DNA.

Published in:

Holocene, 2000, v. 10, n. 6, p. 769, doi. 10.1191/09596830095024

By:

Jones, M.;
Brown, T.

Publication type:

Article

Reduction of the contaminant fraction of DNA obtained from an ancient giant panda bone.

Published in:

BMC Research Notes, 2017, v. 10, p. 1, doi. 10.1186/s13104-017-3061-3

By:

Basler, Nikolas;
Xenikoudakis, Georgios;
Westbury, Michael V.;
Lingfeng Song;
Guilian Sheng;
Barlow, Axel

Publication type:

Article

A comparison of methods for estimating substitution rates from ancient DNA sequence data.

Published in:

BMC Evolutionary Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12862-018-1192-3

By:

Tong, K. Jun;
Duchêne, David A.;
Duchêne, Sebastián;
Geoghegan, Jemma L.;
Ho, Simon Y. W.

Publication type:

Article

A 1 Ma sedimentary ancient DNA (sedaDNA) record of catchment vegetation changes and the developmental history of tropical Lake Towuti (Sulawesi, Indonesia).

Published in:

Geobiology, 2024, v. 22, n. 3, p. 1, doi. 10.1111/gbi.12599

By:

Ekram, Md Akhtar‐E;
Campbell, Matthew;
Kose, Sureyya H.;
Plet, Chloe;
Hamilton, Rebecca;
Bijaksana, Satria;
Grice, Kliti;
Russell, James;
Stevenson, Janelle;
Vogel, Hendrik;
Coolen, Marco J. L.

Publication type:

Article

Holocene chloroplast genetic variation of shrubs (Alnus alnobetula, Betula nana, Salix sp.) at the siberian tundra‐taiga ecotone inferred from modern chloroplast genome assembly and sedimentary ancient DNA analyses.

Published in:

Ecology & Evolution (20457758), 2021, v. 11, n. 5, p. 2173, doi. 10.1002/ece3.7183

By:

Meucci, Stefano;
Schulte, Luise;
Zimmermann, Heike H.;
Stoof‐Leichsenring, Kathleen R.;
Epp, Laura;
Bronken Eidesen, Pernille;
Herzschuh, Ulrike

Publication type:

Article

Ancient pathogen DNA in human teeth and petrous bones.

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 6, p. 3524, doi. 10.1002/ece3.3924

By:

Margaryan, Ashot;
Hansen, Henrik B.;
Rasmussen, Simon;
Sikora, Martin;
Moiseyev, Vyacheslav;
Khoklov, Alexandr;
Epimakhov, Andrey;
Yepiskoposyan, Levon;
Kriiska, Aivar;
Varul, Liivi;
Saag, Lehti;
Lynnerup, Niels;
Willerslev, Eske;
Allentoft, Morten E.

Publication type:

Article

Systematic Ancient DNA Species Identification Fails to Find Late Holocene Domesticated Cattle in Southern Africa.

Published in:

Biology (2079-7737), 2020, v. 9, n. 10, p. 316, doi. 10.3390/biology9100316

By:

Horsburgh, K. Ann;
Gosling, Anna L.

Publication type:

Article

The First Attested Extraction of Ancient DNA in Legumes (Fabaceae).

Published in:

Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.01006

By:

Mikić, Aleksandar M.

Publication type:

Article

The future of ancient DNA: Technical advances and conceptual shifts.

Published in:

BioEssays, 2015, v. 37, n. 3, p. 284, doi. 10.1002/bies.201400160

By:

Hofreiter, Michael;
Paijmans, Johanna L. A.;
Goodchild, Helen;
Speller, Camilla F.;
Barlow, Axel;
Fortes, Gloria G.;
Thomas, Jessica A.;
Ludwig, Arne;
Collins, Matthew

Publication type:

Article

Statistical Distributions of Genome Assemblies Reveal Random Effects in Ancient Viral DNA Reconstructions.

Published in:

Viruses (1999-4915), 2025, v. 17, n. 2, p. 195, doi. 10.3390/v17020195

By:

Antoneli, Fernando;
Peter, Cristina M.;
Briones, Marcelo R. S.

Publication type:

Article

Methodologies for Ancient DNA Extraction from Bones for Genomic Analysis: Approaches and Guidelines.

Published in:

Russian Journal of Genetics, 2022, v. 58, n. 9, p. 1017, doi. 10.1134/S1022795422090034

By:

Andreeva, T. V.;
Malyarchuk, A. B.;
Soshkina, A. D.;
Dudko, N. A.;
Plotnikova, M. Yu.;
Rogaev, E. I.

Publication type:

Article

ANALYSIS OF ANCIENT DNA FROM FOSSIL CORALLINES (CORALLINALES, RHODOPHYTA).

Published in:

Journal of Phycology, 2008, v. 44, n. 2, p. 374, doi. 10.1111/j.1529-8817.2008.00462.x

By:

Hughey, Jeffery R.;
Braga, Juan C.;
Aguirre, Julio;
Woelkerling, William J.;
Webster, Jody M.

Publication type:

Article