Works matching AU von Hippel, Peter H.

Results: 22

Fifty years of DNA 'Breathing': Reflections on old and new approaches.

Published in:

Biopolymers, 2013, v. 99, n. 12, p. 923, doi. 10.1002/bip.22347

By:

von Hippel, Peter H.;
Johnson, Neil P.;
Marcus, Andrew H.

Publication type:

Article

Macromolecular complexes that unwind nucleic acids.

Published in:

BioEssays, 2003, v. 25, n. 12, p. 1168, doi. 10.1002/bies.10369

By:

von Hippel, Peter H.;
Delagoutte, Emmanuelle

Publication type:

Article

Probing the nucleic acid binding modes of the single‐stranded DNA binding protein of the bacteriophage T4 replication complex.

Published in:

FASEB Journal, 2013, v. 27, p. 541.2, doi. 10.1096/fasebj.27.1_supplement.541.2

By:

Jose, Davis;
Weitzel, Steven E.;
von Hippel, Peter H.

Publication type:

Article

Helicases become mechanistically simpler and functionally more complex.

Published in:

Nature Structural & Molecular Biology, 2004, v. 11, n. 6, p. 494, doi. 10.1038/nsmb0604-494

By:

von Hippel, Peter H.

Publication type:

Article

Conformational aspects of the nucleic acid-protein recognition problem.

Published in:

Journal of Cellular Physiology, 1969, v. 74, p. 235, doi. 10.1002/jcp.1040740426

By:

Von Hippel, Peter H.

Publication type:

Article

Site-specific free energy surface parameters from single-molecule fluorescence measurements of exciton-coupled (iCy3)2 dimer probes positioned at DNA replication fork junctions.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 3, p. 1, doi. 10.1093/nar/gkaf047

By:

Maurer, Jack;
Albrecht, Claire S;
von Hippel, Peter H;
Marcus, Andrew H

Publication type:

Article

Using transition density models to interpret experimental optical spectra of exciton-coupled cyanine (iCy3)2 dimer probes of local DNA conformations at or near functional protein binding sites.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 3, p. 1272, doi. 10.1093/nar/gkad1163

By:

Heussman, Dylan;
Enkhbaatar, Lulu;
Sorour, Mohammed I;
Kistler, Kurt A;
von Hippel, Peter H;
Matsika, Spiridoula;
Marcus, Andrew H

Publication type:

Article

Dinucleotides as simple models of the base stacking-unstacking component of DNA 'breathing' mechanisms.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 4, p. 1872, doi. 10.1093/nar/gkab015

By:

Beyerle, Eric R;
Dinpajooh, Mohammadhasan;
Ji, Huiying;
von Hippel, Peter H;
Marcus, Andrew H;
Guenza, Marina G

Publication type:

Article

Mapping DNA conformations and interactions within the binding cleft of bacteriophage T4 single-stranded DNA binding protein (gp32) at single nucleotide resolution.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 2, p. 916, doi. 10.1093/nar/gkaa1230

By:

Camel, Benjamin R;
Jose, Davis;
Meze, Katarina;
Dang, Anson;
von Hippel, Peter H

Publication type:

Article

Direct observation of UV-crosslinked protein-nucleic acid complexes by matrix-assisted laser desorption lonization mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 1993, v. 7, n. 6, p. 496, doi. 10.1002/rcm.1290070619

By:

Jensen, Ole N.;
Barofsky, Douglas F.;
Young, Mark C.;
Von Hippel, Peter H.;
Swenson, Stephen;
Seifried, Steven E.

Publication type:

Article

On the Processivity of Polymerasesa.

Published in:

Annals of the New York Academy of Sciences, 1994, v. 726, n. 1, p. 118, doi. 10.1111/j.1749-6632.1994.tb52803.x

By:

HIPPEL, PETER H. VON;
FAIRFIELD, FREDERIC R.;
DOLEJSI, MARY KAY

Publication type:

Article

Thinking quantitatively about transcriptional regulation.

Published in:

Nature Reviews Molecular Cell Biology, 2005, v. 6, n. 3, p. 221, doi. 10.1038/nrm1588

By:

Greive, Sandra J.;
Von Hippel, Peter H.

Publication type:

Article

Specific ion effects on the solution conformation of poly- L-proline.

Published in:

Biopolymers, 1969, v. 7, n. 6, p. 861, doi. 10.1002/bip.1969.360070603

By:

Schleich, Thomas;
Von Hippel, Peter H.

Publication type:

Article

Water facets.

Published in:

Nature, 1976, v. 261, n. 5562, p. 728, doi. 10.1038/261728b0

By:

von Hippel, Peter H.

Publication type:

Article

Single-molecule FRET studies of the cooperative and non-cooperative binding kinetics of the bacteriophage T4 single-stranded DNA binding protein (gp32) to ssDNA lattices at replication fork junctions.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 22, p. 10691, doi. 10.1093/nar/gkw863

By:

Lee, Wonbae;
Gillies, John P.;
Jose, Davis;
Israels, Brett A.;
von Hippel, Peter H.;
Marcus, Andrew H.

Publication type:

Article

Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: polynucleotide binding and cooperativity.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9291, doi. 10.1093/nar/gkv818

By:

Jose, Davis;
Weitzel, Steven E.;
Baase, Walter A.;
Michael, Miya M.;
von Hippel, Peter H.

Publication type:

Article

Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: gp32 monomer binding.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 19, p. 9276, doi. 10.1093/nar/gkv817

By:

Jose, Davis;
Weitzel, Steven E.;
Baase, Walter A.;
von Hippel, Peter H.

Publication type:

Article

Internally labeled Cy3/Cy5 DNA constructs show greatly enhanced photo-stability in single-molecule FRET experiments.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 9, p. 5967, doi. 10.1093/nar/gku199

By:

Wonbae Lee;
von Hippel, Peter H.;
Marcus, Andrew H.

Publication type:

Article

Internally labeled Cy3/Cy5 DNA constructs show greatly enhanced photo-stability in single-molecule FRET experiments.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 9, p. 5967, doi. 10.1093/nar/gku199

By:

Lee, Wonbae;
von Hippel, Peter H.;
Marcus, Andrew H.

Publication type:

Article

Electronic transition moments of 6-methyl isoxanthopterin—a fluorescent analogue of the nucleic acid base guanine.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 2, p. 995, doi. 10.1093/nar/gks1148

By:

Widom, Julia R.;
Rappoport, Dmitrij;
Perdomo-Ortiz, Alejandro;
Thomsen, Hanna;
Johnson, Neil P.;
von Hippel, Peter H.;
Aspuru-Guzik, Alán;
Marcus, Andrew H.

Publication type:

Article

Characterization of the 6-methyl isoxanthopterin (6-MI) base analog dimer, a spectroscopic probe for monitoring guanine base conformations at specific sites in nucleic acids.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 3, p. 1191, doi. 10.1093/nar/gkr858

By:

Datta, Kausiki;
Johnson, Neil P.;
Villani, Giuseppe;
Marcus, Andrew H.;
von Hippel, Peter H.

Publication type:

Article

DNA models of trinucleotide frameshift deletions: the formation of loops and bulges at the primer–template junction.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 5, p. 1682, doi. 10.1093/nar/gkn1042

By:

Baase, Walter A.;
Jose, Davis;
Ponedel, Benjamin C.;
von Hippel, Peter H.;
Johnson, Neil P.

Publication type:

Article

Works matching AU von Hippel, Peter H.

Fifty years of DNA 'Breathing': Reflections on old and new approaches.

Macromolecular complexes that unwind nucleic acids.

Probing the nucleic acid binding modes of the single‐stranded DNA binding protein of the bacteriophage T4 replication complex.

Helicases become mechanistically simpler and functionally more complex.

Conformational aspects of the nucleic acid-protein recognition problem.

Site-specific free energy surface parameters from single-molecule fluorescence measurements of exciton-coupled (iCy3)<sub>2</sub> dimer probes positioned at DNA replication fork junctions.

Using transition density models to interpret experimental optical spectra of exciton-coupled cyanine (iCy3)<sub>2</sub> dimer probes of local DNA conformations at or near functional protein binding sites.

Dinucleotides as simple models of the base stacking-unstacking component of DNA 'breathing' mechanisms.

Mapping DNA conformations and interactions within the binding cleft of bacteriophage T4 single-stranded DNA binding protein (gp32) at single nucleotide resolution.

Direct observation of UV-crosslinked protein-nucleic acid complexes by matrix-assisted laser desorption lonization mass spectrometry.

On the Processivity of Polymerases<sup>a</sup>.

Thinking quantitatively about transcriptional regulation.

Specific ion effects on the solution conformation of poly- L-proline.

Water facets.

Single-molecule FRET studies of the cooperative and non-cooperative binding kinetics of the bacteriophage T4 single-stranded DNA binding protein (gp32) to ssDNA lattices at replication fork junctions.

Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: polynucleotide binding and cooperativity.

Mapping the interactions of the single-stranded DNA binding protein of bacteriophage T4 (gp32) with DNA lattices at single nucleotide resolution: gp32 monomer binding.

Internally labeled Cy3/Cy5 DNA constructs show greatly enhanced photo-stability in single-molecule FRET experiments.

Internally labeled Cy3/Cy5 DNA constructs show greatly enhanced photo-stability in single-molecule FRET experiments.

Electronic transition moments of 6-methyl isoxanthopterin—a fluorescent analogue of the nucleic acid base guanine.

Characterization of the 6-methyl isoxanthopterin (6-MI) base analog dimer, a spectroscopic probe for monitoring guanine base conformations at specific sites in nucleic acids.

DNA models of trinucleotide frameshift deletions: the formation of loops and bulges at the primer–template junction.