Works matching AU van der Oost, John

Results: 100

An updated evolutionary classification of CRISPR-Cas systems.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 11, p. 722, doi. 10.1038/nrmicro3569

By:

Makarova, Kira S.;
Wolf, Yuri I.;
Alkhnbashi, Omer S.;
Costa, Fabrizio;
Shah, Shiraz A.;
Saunders, Sita J.;
Barrangou, Rodolphe;
Brouns, Stan J. J.;
Charpentier, Emmanuelle;
Haft, Daniel H.;
Horvath, Philippe;
Moineau, Sylvain;
Mojica, Francisco J. M.;
Terns, Rebecca M.;
Terns, Michael P.;
White, Malcolm F.;
Yakunin, Alexander F.;
Garrett, Roger A.;
van der Oost, John;
Backofen, Rolf

Publication type:

Article

Unravelling the structural and mechanistic basis of CRISPR-Cas systems.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 7, p. 479, doi. 10.1038/nrmicro3279

By:

van der Oost, John;
Westra, Edze R.;
Jackson, Ryan N.;
Wiedenheft, Blake

Publication type:

Article

Evolution and classification of the CRISPR-Cas systems.

Published in:

2011

By:

Makarova, Kira S.;
Haft, Daniel H.;
Barrangou, Rodolphe;
Brouns, Stan J. J.;
Charpentier, Emmanuelle;
Horvath, Philippe;
Moineau, Sylvain;
Mojica, Francisco J. M.;
Wolf, Yuri I.;
Yakunin, Alexander F.;
van der Oost, John;
Koonin, Eugene V.

Publication type:

Opinion

Improved oligosaccharide synthesis by protein engineering of β-glucosidase CelB from hyperthermophilic Pyrococcus furiosus.

Published in:

Biotechnology & Bioengineering, 2001, v. 73, n. 3, p. 203, doi. 10.1002/bit.1052

By:

Hansson, Therese;
Kaper, Thijs;
van der Oost, John;
de Vos, Willem M.;
Adlercreutz, Patrick

Publication type:

Article

Hydrogen production by hyperthermophilic and extremely thermophilic bacteria and archaea: mechanisms for reductant disposal.

Published in:

Environmental Technology, 2010, v. 31, n. 8/9, p. 993, doi. 10.1080/09593331003710244

By:

Verhaart, Marcel R. A.;
Bielen, Abraham A. M.;
Van der Oost, John;
Stams, Alfons J. M.;
Kengen, Servé W. M.

Publication type:

Article

Complete genome sequence of thermophilic Bacillus smithii type strain DSM 4216T.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0172-8

By:

Bosma, Elleke F.;
Koehorst, Jasper J.;
van Hijum, Sacha A. F. T.;
Renckens, Bernadet;
Vriesendorp, Bastienne;
van de Weijer, Antonius H. P.;
Schaap, Peter J.;
de Vos, Willem M.;
van der Oost, John;
van Kranenburg, Richard

Publication type:

Article

Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus.

Published in:

EMBO Journal, 2001, v. 20, n. 5, p. 990, doi. 10.1093/emboj/20.5.990

By:

Leonard, Philip M.;
Smits, Sander H. J.;
Sedelnikova, Svetlana E.;
Brinkman, Arie B.;
de Vos, Willem M.;
van der Oost, John;
Rice, David W.;
Rafferty, John B.

Publication type:

Article

Discovering novel biology by in silico archaeology.

Published in:

Nature Reviews Microbiology, 2005, v. 3, n. 11, p. 859, doi. 10.1038/nrmicro1268

By:

Ettema, Thijs J. G.;
de Vos, Willem M.;
van der Oost, John

Publication type:

Article

Cofactor engineering of Lactobacillus brevis alcohol dehydrogenase by computational design.

Published in:

Engineering in Life Sciences, 2009, v. 9, n. 1, p. 38, doi. 10.1002/elsc.200800046

By:

Machielsen, Ronnie;
Looger, Loren L.;
Raedts, John;
Dijkhuizen, Sjoerd;
Hummel, Werner;
Hennemann, Hans-Georg;
Daussmann, Thomas;
van der Oost, John

Publication type:

Article

Carboxylic ester hydrolases from hyperthermophiles.

Published in:

Extremophiles, 2009, v. 13, n. 4, p. 567, doi. 10.1007/s00792-009-0260-4

By:

Levisson, Mark;
van der Oost, John;
Kengen, Servé W. M.

Publication type:

Article

Laboratory evolution of Pyrococcus furiosus alcohol dehydrogenase to improve the production of (2S,5S)-hexanediol at moderate temperatures.

Published in:

Extremophiles, 2008, v. 12, n. 4, p. 587, doi. 10.1007/s00792-008-0164-8

By:

Machielsen, Ronnie;
Leferink, Nicole G. H.;
Hendriks, Annemarie;
Brouns, Stan J. J.;
Hennemann, Hans-Georg;
Dauβmann, Thomas;
Van Der Oost, John

Publication type:

Article

The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN) of Sulfolobus solfataricus: a key-enzyme of the semi-phosphorylative branch of the Entner–Doudoroff pathway.

Published in:

Extremophiles, 2008, v. 12, n. 1, p. 75, doi. 10.1007/s00792-007-0082-1

By:

Ettema, Thijs J. G.;
Ahmed, Hatim;
Geerling, Ans C. M.;
van der Oost, John;
Siebers, Bettina

Publication type:

Article

Influence of temperature on the production of an archaeal thermoactive alcohol dehydrogenase from Pyrococcus furiosus with recombinant Escherichia coli.

Published in:

Extremophiles, 2006, v. 10, n. 3, p. 221, doi. 10.1007/s00792-005-0490-z

By:

Kube, Jürgen;
Brokamp, Christian;
Machielsen, Ronnie;
Oost, John Van der;
Märkl, Herbert

Publication type:

Article

Molecular characterization of fervidolysin, a subtilisin-like serine protease from the thermophilic bacterium Fervidobacterium pennivorans.

Published in:

Extremophiles, 2002, v. 6, n. 3, p. 185, doi. 10.1007/s007920100239

By:

Kluskens, Leon D.;
Voorhorst, Wilfried G.;
Siezen, Roland J.;
Schwerdtfeger, Ruth M.;
Antranikian, Garabed;
van der Oost, John;
de Vos, Willem M.

Publication type:

Article

Activity and stability of hyperthermophilic enzymes: a comparative study on two archaeal β-glycosidases.

Published in:

Extremophiles, 2000, v. 4, n. 3, p. 157, doi. 10.1007/s007920070030

By:

Pouwels, Jeroen;
Moracci, Marco;
Cobucci-Ponzano, Beatrice;
Perugino, Giuseppe;
van der Oost, John;
Kaper, Thijs;
Lebbink, J.H.G.;
de Vos, W.M.;
Ciaramella, Maria;
Rossi, M.

Publication type:

Article

Eat1-Like Alcohol Acyl Transferases From Yeasts Have High Alcoholysis and Thiolysis Activity.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.579844

By:

Patinios, Constantinos;
Lanza, Lucrezia;
Corino, Inge;
Franssen, Maurice C. R.;
Van der Oost, John;
Weusthuis, Ruud A.;
Kengen, Servé W. M.

Publication type:

Article

Transcriptomic and Phenotypic Analysis of a spoIIE Mutant in Clostridium beijerinckii.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.556064

By:

Diallo, Mamou;
Kint, Nicolas;
Monot, Marc;
Collas, Florent;
Martin-Verstraete, Isabelle;
van der Oost, John;
Kengen, Servé W. M.;
López-Contreras, Ana M.

Publication type:

Article

The Lrp family of transcriptional regulators.

Published in:

Molecular Microbiology, 2003, v. 48, n. 2, p. 287, doi. 10.1046/j.1365-2958.2003.03442.x

By:

Brinkman, Arie B.;
Ettema, Thijs J. G.;
de Vos, Willem M.;
van der Oost, John

Publication type:

Article

An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.

Published in:

Molecular Microbiology, 2003, v. 47, n. 6, p. 1495, doi. 10.1046/j.1365-2958.2003.03381.x

By:

Cohen, Georges N.;
Barbe, Valérie;
Flament, Didier;
Galperin, Michael;
Heilig, Roland;
Lecompte, Odile;
Poch, Olivier;
Prieur, Daniel;
Quérellou, Joël;
Ripp, Raymond;
Thierry, Jean-Claude;
Van der Oost, John;
Weissenbach, Jean;
Zivanovic, Yvan;
Forterre, Patrick

Publication type:

Article

FnrP and NNR of Paracoccus denitrificans are both members of the FNR family of transcriptional activators but have distinct roles in respiratory adaptation in response to oxygen limitation.

Published in:

Molecular Microbiology, 1997, v. 23, n. 5, p. 893, doi. 10.1046/j.1365-2958.1997.2801638.x

By:

Van Spanning, Rob J. M.;
De Boer, Anthonius P. N.;
Reijnders, Willem N. M.;
Westertoff, Hans V.;
Stouthamer, Adriaan H.;
Van Der Oost, John

Publication type:

Article

An alternative model for haem ligation in nitrate reductase and analogous respiratory cytochrome β complexes.

Published in:

1996

By:

Van der Oost, John;
Nederkoorn, Paul H. J.;
Stouthamer, Adriaan H.;
Westerhoff, Hans V.;
Van Spanning, Rob J. M.

Publication type:

Letter

Structural and functional analysis of aa3-type and cbb3-type cytochrome c oxidases of Paracoccus denitrificans reveals significant differences in proton-pump design.

Published in:

Molecular Microbiology, 1996, v. 20, n. 6, p. 1247, doi. 10.1111/j.1365-2958.1996.tb02644.x

By:

De Gier, Jan-Wiliem L.;
Schepper, Mike;
Reijnders, Willem N. M.;
Van Dyck, Stef J.;
Slotboom, Dirk Jan;
Warne, Antony;
Saraste, Matti;
Krab, Klaas;
Finel, Moshe;
Stouthamer, Adriaan H.;
van Spanning, Rob J. M.;
Van der Oost, John

Publication type:

Article

A capture approach for supercoiled plasmid DNA using a triplex-forming oligonucleotide.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 10, p. e111, doi. 10.1093/nar/gkt239

By:

Ruigrok, Vincent J. B.;
Westra, Edze R.;
Brouns, Stan J. J.;
Escudé, Christophe;
Smidt, Hauke;
van der Oost, John

Publication type:

Article

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 6, p. 1944, doi. 10.1093/nar/gkl152

By:

Thaw, Paul;
Sedelnikova, Svetlana E.;
Muranova, Tatyana;
Wiese, Sebastian;
Ayora, Sylvia;
Alonso, Juan C.;
Brinkman, Arie B.;
Akerboom, Jasper;
van der Oost, John;
Rafferty, John B.

Publication type:

Article

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 5, p. 1439, doi. 10.1093/nar/gkl009

By:

Thaw, Paul;
Sedelnikova, Svetlana E.;
Muranova, Tatyana;
Wiese, Sebastian;
Ayora, Sylvia;
Alonso, Juan C.;
Brinkman, Arie B.;
Akerboom, Jasper;
van der Oost, John;
Rafferty, John B.

Publication type:

Article

SCOPE enables type III CRISPR-Cas diagnostics using flexible targeting and stringent CARF ribonuclease activation.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25337-5

By:

Steens, Jurre A.;
Zhu, Yifan;
Taylor, David W.;
Bravo, Jack P. K.;
Prinsen, Stijn H. P.;
Schoen, Cor D.;
Keijser, Bart J. F.;
Ossendrijver, Michel;
Hofstra, L. Marije;
Brouns, Stan J. J.;
Shinkai, Akeo;
van der Oost, John;
Staals, Raymond H. J.

Publication type:

Article

Towards a synthetic cell cycle.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24772-8

By:

Olivi, Lorenzo;
Berger, Mareike;
Creyghton, Ramon N. P.;
De Franceschi, Nicola;
Dekker, Cees;
Mulder, Bela M.;
Claassens, Nico J.;
ten Wolde, Pieter Rein;
van der Oost, John

Publication type:

Article

Temperature-dependent structural and functional features of a hyperthermostable enzyme using elastic neutron scattering.

Published in:

Proteins, 2005, v. 61, n. 2, p. 377, doi. 10.1002/prot.20606

By:

Koutsopoulos, Sotirios;
van der Oost, John;
Norde, Willem

Publication type:

Article

Engineering <italic>Geobacillus thermodenitrificans</italic> to introduce cellulolytic activity; expression of native and heterologous cellulase genes.

Published in:

BMC Biotechnology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12896-018-0453-y

By:

Daas, Martinus J. A.;
Nijsse, Bart;
van de Weijer, Antonius H. P.;
Groenendaal, Bart W. A. J.;
Janssen, Fons;
van der Oost, John;
van Kranenburg, Richard

Publication type:

Article

Biochemical characterization of the xylan hydrolysis profile of the extracellular endo-xylanase from Geobacillus thermodenitrificans T12.

Published in:

BMC Biotechnology, 2017, v. 17, p. 1, doi. 10.1186/s12896-017-0357-2

By:

Daas, Martinus J. A.;
Martínez, Patricia Murciano;
van de Weijer, Antonius H. P.;
van der Oost, John;
de Vos, Willem M.;
Kabel, Mirjam A.;
van Kranenburg, Richard

Publication type:

Article

Crystal structure of a family 16 endoglucanase from the hyperthermophile Pyrococcus furiosus– structural basis of substrate recognition.

Published in:

FEBS Journal, 2009, v. 276, n. 4, p. 1048, doi. 10.1111/j.1742-4658.2008.06848.x

By:

Ilari, Andrea;
Fiorillo, Annarita;
Angelaccio, Sebastiana;
Florio, Rita;
Chiaraluce, Roberta;
van der Oost, John;
Consalvi, Valerio

Publication type:

Article

Tertiary structure in 7.9 m guanidinium chloride − the role of Glu53 and Asp287 in Pyrococcus furiosus endo-β-1,3-glucanase.

Published in:

FEBS Journal, 2007, v. 274, n. 23, p. 6167, doi. 10.1111/j.1742-4658.2007.06137.x

By:

Chiaraluce, Roberta;
Florio, Rita;
Angelaccio, Sebastiana;
Gianese, Giulio;
van Lieshout, Johan F. T.;
van der Oost, John;
Consalvi, Valerio

Publication type:

Article

Kinetically controlled refolding of a heat-denatured hyperthermostable protein.

Published in:

FEBS Journal, 2007, v. 274, n. 22, p. 5915, doi. 10.1111/j.1742-4658.2007.06114.x

By:

Koutsopoulos, Sotirios;
van der Oost, John;
Norde, Willem

Publication type:

Article

Hyperthermophilic enzymes − stability, activity and implementation strategies for high temperature applications.

Published in:

FEBS Journal, 2007, v. 274, n. 16, p. 4044, doi. 10.1111/j.1742-4658.2007.05954.x

By:

Unsworth, Larry D.;
van der Oost, John;
Koutsopoulos, Sotirios

Publication type:

Article

Characterization and structural modeling of a new type of thermostable esterase from Thermotoga maritima.

Published in:

FEBS Journal, 2007, v. 274, n. 11, p. 2832, doi. 10.1111/j.1742-4658.2007.05817.x

By:

Levisson, Mark;
van der Oost, John;
Kengen, Servé W. M.

Publication type:

Article

Production and characterization of a thermostableL-threonine dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus.

Published in:

FEBS Journal, 2006, v. 273, n. 7, p. 2722, doi. 10.1111/j.1742-4658.2006.05290.x

By:

Machielsen, Ronnie;
van der Oost, John

Publication type:

Article

Characterization and mode of action of an exopolygalacturonase from the hyperthermophilic bacterium Thermotoga maritima.

Published in:

FEBS Journal, 2005, v. 272, n. 21, p. 5464, doi. 10.1111/j.1742-4658.2005.04935.x

By:

Kluskens, Leon D.;
van Alebeek, Gert-Jan W. M.;
Walther, Jasper;
Voragen, Alphons G. J.;
de Vos, Willem M.;
van der Oost, John

Publication type:

Article

Conformational studies of a hyperthermostable enzyme.

Published in:

FEBS Journal, 2005, v. 272, n. 21, p. 5484, doi. 10.1111/j.1742-4658.2005.04941.x

By:

Koutsopoulos, Sotirios;
van der Oost, John;
Norde, Willem

Publication type:

Article

Initial Mutations Direct Alternative Pathways of Protein Evolution.

Published in:

PLoS Genetics, 2011, v. 7, n. 3, p. 1, doi. 10.1371/journal.pgen.1001321

By:

Salverda, Merijn L. M.;
Dellus, Eynat;
Gorter, Florien A.;
Debet, Alfons J. M.;
van der Oost, John;
Hoekstra, Rolf F.;
Tawfik, Dan S.;
de Visser, J. Arjan G. M.

Publication type:

Article

Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes.

Published in:

Biological Chemistry, 2011, v. 392, n. 4, p. 277, doi. 10.1515/BC.2011.042

By:

Al-Attar, Sinan;
Westra, Edze R.;
van der Oost, John;
Brouns, Stan J.J.

Publication type:

Article

Biohydrogen Production by the Thermophilic Bacterium Caldicellulosiruptor saccharolyticus: Current Status and Perspectives.

Published in:

Life (2075-1729), 2013, v. 3, n. 1, p. 52, doi. 10.3390/life3010052

By:

Bielen, Abraham A. M.;
Verhaart, Marcel R. A.;
van der Oost, John;
Kengen, Servé W. M.

Publication type:

Article

Growth-uncoupled isoprenoid synthesis in Rhodobacter sphaeroides.

Published in:

Biotechnology for Biofuels, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13068-020-01765-1

By:

Orsi, Enrico;
Mougiakos, Ioannis;
Post, Wilbert;
Beekwilder, Jules;
Dompè, Marco;
Eggink, Gerrit;
van der Oost, John;
Kengen, Servé W. M.;
Weusthuis, Ruud A.

Publication type:

Article

Multilevel optimisation of anaerobic ethyl acetate production in engineered Escherichia coli.

Published in:

Biotechnology for Biofuels, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13068-020-01703-1

By:

Bohnenkamp, Anna C.;
Kruis, Aleksander J.;
Mars, Astrid E.;
Wijffels, Rene H.;
van der Oost, John;
Kengen, Servé W. M.;
Weusthuis, Ruud A.

Publication type:

Article

From Eat to trEat: engineering the mitochondrial Eat1 enzyme for enhanced ethyl acetate production in Escherichia coli.

Published in:

Biotechnology for Biofuels, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13068-020-01711-1

By:

Kruis, Aleksander J.;
Bohnenkamp, Anna C.;
Nap, Bram;
Nielsen, Jochem;
Mars, Astrid E.;
Wijffels, Rene H.;
van der Oost, John;
Kengen, Servé W. M.;
Weusthuis, Ruud A.

Publication type:

Article

Integrated In Silico Analysis of Pathway Designs for Synthetic Photo-Electro-Autotrophy.

Published in:

PLoS ONE, 2016, v. 11, n. 6, p. 1, doi. 10.1371/journal.pone.0157851

By:

Volpers, Michael;
Claassens, Nico J.;
Noor, Elad;
van der Oost, John;
de Vos, Willem M.;
Kengen, Servé W. M.;
Martins dos Santos, Vitor A. P.

Publication type:

Article

Characterization of Aptamer-Protein Complexes by X-ray Crystallography and Alternative Approaches.

Published in:

International Journal of Molecular Sciences, 2012, v. 13, n. 8, p. 10537, doi. 10.3390/ijms130810537

By:

Ruigrok, Vincent J. B.;
Levisson, Mark;
Hekelaar, Johan;
Smidt, Hauke;
Dijkstra, Bauke W.;
Der Oost, John van

Publication type:

Article

The archaeal TFIIEa homologue facilitates transcription initiation by enhancing TATA-box recognition.

Published in:

2001

By:

Bell, Stephen D.;
Brinkman, Arie B.;
van der Oost, John;
Jackson, Stephen P.

Publication type:

Report

Gut bacteriophage dynamics during fecal microbial transplantation in subjects with metabolic syndrome.

Published in:

Gut Microbes, 2021, v. 13, n. 1, p. 1, doi. 10.1080/19490976.2021.1897217

By:

Manrique, Pilar;
Zhu, Yifan;
van der Oost, John;
Herrema, Hilde;
Nieuwdorp, Max;
de Vos, Willem M.;
Young, Mark

Publication type:

Article

Improving heterologous membrane protein production in Escherichia coli by combining transcriptional tuning and codon usage algorithms.

Published in:

PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0184355

By:

Claassens, Nico J.;
Siliakus, Melvin F.;
Spaans, Sebastiaan K.;
Creutzburg, Sjoerd C. A.;
Nijsse, Bart;
Schaap, Peter J.;
Quax, Tessa E. F.;
van der Oost, John

Publication type:

Article

Microbial Diversity and Organic Acid Production of Guinea Pig Faecal Samples.

Published in:

Current Microbiology, 2019, v. 76, n. 4, p. 425, doi. 10.1007/s00284-019-01630-x

By:

van der Oost, Hans;
van der Oost, John;
van Vliet, Daan M.;
Plugge, Caroline M.;
Palakawong Na Ayudthaya, Susakul

Publication type:

Article