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Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis.
Published in:
Journal of Experimental Botany, 2013, v. 64, n. 7, p. 1863, doi. 10.1093/jxb/ert049
By:
- Karlova, Rumyana;
- van Haarst, Jan C.;
- Maliepaard, Chris;
- van de Geest, Henri;
- Bovy, Arnaud G.;
- Lammers, Michiel;
- Angenent, Gerco C.;
- de Maagd, Ruud A.
Publication type:
Article
Differentially expressed genes linked to natural variation in long-term memory formation in Cotesia parasitic wasps.
Published in:
Frontiers in Behavioral Neuroscience, 2015, v. 9, p. 1, doi. 10.3389/fnbeh.2015.00255
By:
- van Vugt, Joke J. F. A.;
- Hoedjes, Katja M.;
- van de Geest, Henri C.;
- Schijlen, Elio W. G. M.;
- Vet, Louise E. M.;
- Smid, Hans M.
Publication type:
Article
Over-expression of Arabidopsis AtCHR23 chromatin remodeling ATPase results in increased variability of growth and gene expression.
Published in:
BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2229-14-76
By:
- Folta, Adam;
- Severing, Edouard I.;
- Krauskopf, Julian;
- van de Geest, Henri;
- Verver, Jan;
- Nap, Jan-Peter;
- Mlynarova, Ludmila
Publication type:
Article
Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen.
Published in:
BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2941-6
By:
- Vanheule, Adriaan;
- Audenaert, Kris;
- Warris, Sven;
- van de Geest, Henri;
- Schijlen, Elio;
- Höfte, Monica;
- De Saeger, Sarah;
- Haesaert, Geert;
- Waalwijk, Cees;
- van der Lee, Theo
Publication type:
Article
Signal-based optical map alignment.
Published in:
PLoS ONE, 2021, v. 16, n. 9, p. 1, doi. 10.1371/journal.pone.0253102
By:
- Akdel, Mehmet;
- van de Geest, Henri;
- Schijlen, Elio;
- van Rijswijck, Irma M. H.;
- Smid, Eddy J.;
- Sanchez-Perez, Gabino;
- de Ridder, Dick
Publication type:
Article
De Novo Assembly of a New Solanum pennellii Accession Using Nanopore Sequencing.
Published in:
Plant Cell, 2017, v. 29, n. 10, p. 2336, doi. 10.1105/tpc.17.00521
By:
- Schmidt, Maximilian H.-W.;
- Vogel, Alexander;
- Denton, Alisandra K.;
- Istace, Benjamin;
- Wormit, Alexandra;
- van de Geest, Henri;
- Bolger, Marie E.;
- Alseekh, Saleh;
- Maß, Janina;
- Pfaff, Christian;
- Schurr, Ulrich;
- Chetelat, Roger;
- Maumus, Florian;
- Aury, Jean-Marc;
- Koren, Sergey;
- Fernie, Alisdair R.;
- Zamir, Dani;
- Bolger, Anthony M.;
- Usadel, Björn
Publication type:
Article
NON-SMOKY GLYCOSYLTRANSFERASE1 Prevents the Release of Smoky Aroma from Tomato Fruit.
Published in:
Plant Cell, 2013, v. 25, n. 8, p. 3067, doi. 10.1105/tpc.113.114231
By:
- Tikunov, Yury M.;
- Molthoff, Jos;
- Vos, Ric C.H. de;
- Beekwilder, Jules;
- Houwelingen, Adele van;
- Hooft, Justin J.J. van der;
- Vries, Mariska Nijenhuis-de;
- Labrie, Caroline W.;
- Verkerke, Wouter;
- van de Geest, Henri;
- Zamora, Marcela Viquez;
- Presa, Silvia;
- Rambla, Jose Luis;
- Granell, Antonio;
- Hall, Robert D.;
- Bovy, Arnaud G.
Publication type:
Article
Comparative genomics of chytrid fungi reveal insights into the obligate biotrophic and pathogenic lifestyle of Synchytrium endobioticum.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-45128-9
By:
- van de Vossenberg, Bart T. L. H.;
- Warris, Sven;
- Nguyen, Hai D. T.;
- van Gent-Pelzer, Marga P. E.;
- Joly, David L.;
- van de Geest, Henri C.;
- Bonants, Peter J. M.;
- Smith, Donna S.;
- Lévesque, C. André;
- van der Lee, Theo A. J.
Publication type:
Article
Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding.
Published in:
G3: Genes | Genomes | Genetics, 2023, v. 13, n. 11, p. 1, doi. 10.1093/g3journal/jkad204
By:
- Xiong, Wei;
- van Workum, Dirk-Jan M.;
- Berke, Lidija;
- Bakker, Linda V.;
- Schijlen, Elio;
- Becker, Frank F. M.;
- de Geest, Henri van;
- Peters, Sander;
- Michelmore, Richard;
- van Treuren, Rob;
- Jeuken, Marieke;
- Smit, Sandra;
- Schranz, M. Eric
Publication type:
Article
Phylogenomic analysis provides insights into MADS-box and TCP gene diversification and floral development of the Asteraceae, supported by de novo genome and transcriptome sequences from dandelion (Taraxacum officinale).
Published in:
Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1198909
By:
- Wei Xiong;
- Risse, Judith;
- Berke, Lidija;
- Tao Zhao;
- van de Geest, Henri;
- Oplaat, Carla;
- Busscher, Marco;
- Ferreira de Carvalho, Julie;
- van der Meer, Ingrid M.;
- Verhoeven, Koen J. F.;
- Schranz, M. Eric;
- Vijverberg, Kitty
Publication type:
Article
Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis.
Published in:
Plant Physiology, 2016, v. 170, n. 4, p. 2187, doi. 10.1104/pp.15.00997
By:
- Kooke, Rik;
- Kruijer, Willem;
- Bours, Ralph;
- Becker, Frank;
- Kuhn, André;
- van de Geest, Henri;
- Buntjer, Jaap;
- Doeswijk, Timo;
- Guerra, José;
- Bouwmeester, Harro;
- Vreugdenhil, Dick;
- Keurentjes, Joost J. B.
Publication type:
Article
Correcting palindromes in long reads after whole-genome amplification.
Published in:
BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5164-1
By:
- Warris, Sven;
- Schijlen, Elio;
- van de Geest, Henri;
- Vegesna, Rahulsimham;
- Hesselink, Thamara;
- te Lintel Hekkert, Bas;
- Sanchez Perez, Gabino;
- Medvedev, Paul;
- Makova, Kateryna D.;
- de Ridder, Dick
Publication type:
Article
Genomic analysis of the native European Solanum species, S. dulcamara.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-356
By:
- D'Agostino, Nunzio;
- Golas, Tomek;
- Van de Geest, Henri;
- Bombarely, Aureliano;
- Dawood, Thikra;
- Zethof, Jan;
- Driedonks, Nicky;
- Wijnker, Erik;
- Bargsten, Joachim;
- Nap, Jan-Peter;
- Mariani, Celestina;
- Rieu, Ivo
Publication type:
Article
Tomato breeding in the genomics era: insights from a SNP array.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-354
By:
- Víquez-Zamora, Marcela;
- Vosman, Ben;
- De Geest, Henri van;
- Bovy, Arnaud;
- Visser, Richard G. F.;
- Finkers, Richard;
- Van Heusden, Adriaan W.
Publication type:
Article
pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment.
Published in:
PLoS ONE, 2018, v. 13, n. 1, p. 1, doi. 10.1371/journal.pone.0190279
By:
- Warris, Sven;
- Timal, N. Roshan N.;
- Kempenaar, Marcel;
- Poortinga, Arne M.;
- van de Geest, Henri;
- Varbanescu, Ana L.;
- Nap, Jan-Peter
Publication type:
Article

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