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Predicting response to enzalutamide and abiraterone in metastatic prostate cancer using whole-omics machine learning.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37647-x
By:
- de Jong, Anouk C.;
- Danyi, Alexandra;
- van Riet, Job;
- de Wit, Ronald;
- Sjöström, Martin;
- Feng, Felix;
- de Ridder, Jeroen;
- Lolkema, Martijn P.
Publication type:
Article
A Compendium of AR Splice Variants in Metastatic Castration-Resistant Prostate Cancer.
Published in:
International Journal of Molecular Sciences, 2023, v. 24, n. 6, p. 6009, doi. 10.3390/ijms24066009
By:
- Isebia, Khrystany T.;
- Lolkema, Martijn P.;
- Jenster, Guido;
- de Wit, Ronald;
- Martens, John W. M.;
- van Riet, Job
Publication type:
Article
CRISPRs in the human genome are differentially expressed between malignant and normal adjacent to tumor tissue.
Published in:
Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03249-4
By:
- van Riet, Job;
- Saha, Chinmoy;
- Strepis, Nikolaos;
- Brouwer, Rutger W. W.;
- Martens-Uzunova, Elena S.;
- van de Geer, Wesley S.;
- Swagemakers, Sigrid M. A.;
- Stubbs, Andrew;
- Halimi, Yassir;
- Voogd, Sanne;
- Tanmoy, Arif Mohammad;
- Komor, Malgorzata A.;
- Hoogstrate, Youri;
- Janssen, Bart;
- Fijneman, Remond J. A.;
- Niknafs, Yashar S.;
- Chinnaiyan, Arul M.;
- van IJcken, Wilfred F. J.;
- van der Spek, Peter J.;
- Jenster, Guido
Publication type:
Article
The genomic landscape of 85 advanced neuroendocrine neoplasms reveals subtype-heterogeneity and potential therapeutic targets.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24812-3
By:
- van Riet, Job;
- van de Werken, Harmen J. G.;
- Cuppen, Edwin;
- Eskens, Ferry A. L. M.;
- Tesselaar, Margot;
- van Veenendaal, Linde M.;
- Klümpen, Heinz-Josef;
- Dercksen, Marcus W.;
- Valk, Gerlof D.;
- Lolkema, Martijn P.;
- Sleijfer, Stefan;
- Mostert, Bianca
Publication type:
Article
Author Correction: Whole genome sequencing of metastatic colorectal cancer reveals prior treatment effects and specific metastasis features.
Published in:
2021
By:
- Mendelaar, Pauline A. J.;
- Smid, Marcel;
- van Riet, Job;
- Angus, Lindsay;
- Labots, Mariette;
- Steeghs, Neeltje;
- Hendriks, Mathijs P.;
- Cirkel, Geert A.;
- van Rooijen, Johan M.;
- Ten Tije, Albert J.;
- Lolkema, Martijn P.;
- Cuppen, Edwin;
- Sleijfer, Stefan;
- Martens, John W. M.;
- Wilting, Saskia M.
Publication type:
Correction Notice
ProteoDisco: a flexible R approach to generate customized protein databases for extended search space of novel and variant proteins in proteogenomic studies.
Published in:
Bioinformatics, 2022, v. 38, n. 5, p. 1437, doi. 10.1093/bioinformatics/btab809
By:
- Geer, Wesley S van de;
- Riet, Job van;
- Werken, Harmen J G van de
Publication type:
Article
Katdetectr: an R/bioconductor package utilizing unsupervised changepoint analysis for robust kataegis detection.
Published in:
GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad081
By:
- Hazelaar, Daan M;
- van Riet, Job;
- Hoogstrate, Youri;
- van de Werken, Harmen J G
Publication type:
Article
Fusion transcripts and their genomic breakpoints in polyadenylated and ribosomal RNA–minus RNA sequencing data.
Published in:
GigaScience, 2021, v. 10, n. 12, p. 1, doi. 10.1093/gigascience/giab080
By:
- Hoogstrate, Youri;
- Komor, Malgorzata A;
- Böttcher, René;
- van Riet, Job;
- van de Werken, Harmen J G;
- van Lieshout, Stef;
- Hoffmann, Ralf;
- van den Broek, Evert;
- Bolijn, Anne S;
- Dits, Natasja;
- Sie, Daoud;
- van der Meer, David;
- Pepers, Floor;
- Bangma, Chris H;
- van Leenders, Geert J L H;
- Smid, Marcel;
- French, Pim J;
- Martens, John W M;
- van Workum, Wilbert;
- van der Spek, Peter J
Publication type:
Article
The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13084-7
By:
- van Dessel, Lisanne F.;
- van Riet, Job;
- Smits, Minke;
- Zhu, Yanyun;
- Hamberg, Paul;
- van der Heijden, Michiel S.;
- Bergman, Andries M.;
- van Oort, Inge M.;
- de Wit, Ronald;
- Voest, Emile E.;
- Steeghs, Neeltje;
- Yamaguchi, Takafumi N.;
- Livingstone, Julie;
- Boutros, Paul C.;
- Martens, John W. M.;
- Sleijfer, Stefan;
- Cuppen, Edwin;
- Zwart, Wilbert;
- van de Werken, Harmen J. G.;
- Mehra, Niven
Publication type:
Article
mFast‐SeqS‐based aneuploidy score in circulating cell‐free DNA is a prognostic biomarker in prostate cancer.
Published in:
Molecular Oncology, 2023, v. 17, n. 9, p. 1898, doi. 10.1002/1878-0261.13449
By:
- Isebia, Khrystany T.;
- Mostert, Bianca;
- Deger, Teoman;
- Kraan, Jaco;
- de Weerd, Vanja;
- Oomen‐de Hoop, Esther;
- Hamberg, Paul;
- Haberkorn, Brigitte C. M.;
- Helgason, Helgi H.;
- de Wit, Ronald;
- Mathijssen, Ron H. J.;
- Lolkema, Martijn P.;
- Wilting, Saskia M.;
- van Riet, Job;
- Martens, John W. M.
Publication type:
Article
Molecular heterogeneity and early metastatic clone selection in testicular germ cell cancer development.
Published in:
2019
By:
- Dorssers, Lambert C. J.;
- Gillis, Ad J. M.;
- Stoop, Hans;
- van Marion, Ronald;
- Nieboer, Marleen M.;
- van Riet, Job;
- van de Werken, Harmen J. G.;
- Oosterhuis, J. Wolter;
- de Ridder, Jeroen;
- Looijenga, Leendert H. J.
Publication type:
journal article
68Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.
Published in:
Journal of Nuclear Medicine, 2020, v. 61, n. 12, p. 1, doi. 10.2967/jnumed.119.241109
By:
- de Jong, Anouk C.;
- Smits, Minke;
- van Riet, Job;
- Fütterer, Jurgen J.;
- Brabander, Tessa;
- Hamberg, Paul;
- van Oort, Inge M.;
- de Wit, Ronald;
- Lolkema, Martijn P.;
- Mehra, Niven;
- Segbers, Marcel;
- van der Veldt, Astrid A. M.
Publication type:
Article
68Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.
Published in:
Journal of Nuclear Medicine, 2020, v. 61, n. 11, p. 1, doi. 10.2967/jnumed.119.241109
By:
- de Jong, Anouk C.;
- Smits, Minke;
- van Riet, Job;
- Fütterer, Jurgen J.;
- Brabander, Tessa;
- Hamberg, Paul;
- van Oort, Inge M.;
- de Wit, Ronald;
- Lolkema, Martijn P.;
- Mehra, Niven;
- Segbers, Marcel;
- van der Veldt, Astrid A. M.
Publication type:
Article
68Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.
Published in:
Journal of Nuclear Medicine, 2020, v. 61, n. 10, p. 1, doi. 10.2967/jnumed.119.241109
By:
- de Jong, Anouk C.;
- Smits, Minke;
- Riet, Job van;
- Fütterer, Jurgen J.;
- Brabander, Tessa;
- Hamberg, Paul;
- van Oort, Inge M.;
- Wit, Ronald de;
- Lolkema, Martijn P.;
- Mehra, Niven;
- Segbers, Marcel;
- van der Veldt, Astrid A. M.
Publication type:
Article
68Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.
Published in:
Journal of Nuclear Medicine, 2020, v. 61, n. 9, p. 1, doi. 10.2967/jnumed.119.241109
By:
- de Jong, Anouk C.;
- Smits, Minke;
- van Riet, Job;
- Fütterer, Jurgen J.;
- Brabander, Tessa;
- Hamberg, Paul;
- van Oort, Inge M.;
- de Wit, Ronald;
- Lolkema, Martijn P.;
- Mehra, Niven;
- Segbers, Marcel;
- van der Veldt, Astrid A. M.
Publication type:
Article
68Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.
Published in:
Journal of Nuclear Medicine, 2020, v. 61, n. 8, p. 1, doi. 10.2967/jnumed.119.241109
By:
- de Jong, Anouk C.;
- Smits, Minke;
- van Riet, Job;
- Fütterer, Jurgen J.;
- Brabander, Tessa;
- Hamberg, Paul;
- van Oort, Inge M.;
- de Wit, Ronald;
- Lolkema, Martijn P.;
- Mehra, Niven;
- Segbers, Marcel;
- van der Veldt, Astrid A. M.
Publication type:
Article
68Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.
Published in:
Journal of Nuclear Medicine, 2020, v. 61, n. 7, p. 1, doi. 10.2967/jnumed.119.241109
By:
- de Jong, Anouk C.;
- Smits, Minke;
- van Riet, Job;
- Fütterer, Jurgen J.;
- Brabander, Tessa;
- Hamberg, Paul;
- van Oort, Inge M.;
- de Wit, Ronald;
- Lolkema, Martijn P.;
- Mehra, Niven;
- Segbers, Marcel;
- van der Veldt, Astrid A. M.
Publication type:
Article
68Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.
Published in:
Journal of Nuclear Medicine, 2020, v. 61, n. 6, p. 1, doi. 10.2967/jnumed.119.241109
By:
- de Jong, Anouk C.;
- Smits, Minke;
- van Riet, Job;
- Fütterer, Jurgen J.;
- Brabander, Tessa;
- Hamberg, Paul;
- van Oort, Inge M.;
- de Wit, Ronald;
- Lolkema, Martijn P.;
- Mehra, Niven;
- Segbers, Marcel;
- van der Veldt, Astrid A. M.
Publication type:
Article
68Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.
Published in:
Journal of Nuclear Medicine, 2020, v. 61, n. 5, p. 1, doi. 10.2967/jnumed.119.241109
By:
- de Jong, Anouk C.;
- Smits, Minke;
- van Riet, Job;
- Fütterer, Jurgen J.;
- Brabander, Tessa;
- Hamberg, Paul;
- van Oort, Inge M.;
- de Wit, Ronald;
- Lolkema, Martijn P.;
- Mehra, Niven;
- Segbers, Marcel;
- van der Veldt, Astrid A. M.
Publication type:
Article
68Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.
Published in:
Journal of Nuclear Medicine, 2020, v. 61, n. 4, p. 1, doi. 10.2967/jnumed.119.241109
By:
- de Jong, Anouk C.;
- Smits, Minke;
- van Riet, Job;
- Fütterer, Jurgen J.;
- Brabander, Tessa;
- Paul Hamberg;
- van Oort, Inge M.;
- de Wit, Ronald;
- Lolkema, Martijn P.;
- Mehra, Niven;
- Segbers, Marcel;
- van der Veldt, Astrid A. M.
Publication type:
Article
Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons.
Published in:
BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2246-7
By:
- Smid, Marcel;
- Coebergh van den Braak, Robert R. J.;
- van de Werken, Harmen J. G.;
- van Riet, Job;
- van Galen, Anne;
- de Weerd, Vanja;
- van der Vlugt-Daane, Michelle;
- Bril, Sandra I.;
- Lalmahomed, Zarina S.;
- Kloosterman, Wigard P.;
- Wilting, Saskia M.;
- Foekens, John A.;
- IJzermans, Jan N. M.;
- on behalf of the MATCH study group;
- Martens, John W. M.;
- Sieuwerts, Anieta M.
Publication type:
Article
EGFRvIII transcriptome in glioblastoma: A meta-omics analysis.
Published in:
Neuro-Oncology, 2022, v. 24, n. 3, p. 429, doi. 10.1093/neuonc/noab231
By:
- Hoogstrate, Youri;
- Ghisai, Santoesha A;
- Wit, Maurice de;
- Heer, Iris de;
- Draaisma, Kaspar;
- Riet, Job van;
- Werken, Harmen J G van de;
- Bours, Vincent;
- Buter, Jan;
- Bempt, Isabelle Vanden;
- Eoli, Marica;
- Franceschi, Enrico;
- Frenel, Jean-Sebastien;
- Gorlia, Thierry;
- Hanse, Monique C;
- Hoeben, Ann;
- Kerkhof, Melissa;
- Kros, Johan M;
- Leenstra, Sieger;
- Lombardi, Giuseppe
Publication type:
Article
Four Core Genotypes mice harbour a 3.2MB X-Y translocation that perturbs Tlr7 dosage.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52640-8
By:
- Panten, Jasper;
- Del Prete, Stefania;
- Cleland, James P.;
- Saunders, Lauren M.;
- van Riet, Job;
- Schneider, Anja;
- Ginno, Paul;
- Schneider, Nina;
- Koch, Marie-Luise;
- Chen, Xuqi;
- Gerstung, Moritz;
- Stegle, Oliver;
- Arnold, Arthur P.;
- Turner, James M. A.;
- Heard, Edith;
- Odom, Duncan T.
Publication type:
Article
Whole genome sequencing of metastatic colorectal cancer reveals prior treatment effects and specific metastasis features.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20887-6
By:
- Mendelaar, Pauline A. J.;
- Smid, Marcel;
- van Riet, Job;
- Angus, Lindsay;
- Labots, Mariette;
- Steeghs, Neeltje;
- Hendriks, Mathijs P.;
- Cirkel, Geert A.;
- van Rooijen, Johan M.;
- Ten Tije, Albert J.;
- Lolkema, Martijn P.;
- Cuppen, Edwin;
- Sleijfer, Stefan;
- Martens, John W. M.;
- Wilting, Saskia M.
Publication type:
Article

Found: 24

Predicting response to enzalutamide and abiraterone in metastatic prostate cancer using whole-omics machine learning.

A Compendium of AR Splice Variants in Metastatic Castration-Resistant Prostate Cancer.

CRISPRs in the human genome are differentially expressed between malignant and normal adjacent to tumor tissue.

The genomic landscape of 85 advanced neuroendocrine neoplasms reveals subtype-heterogeneity and potential therapeutic targets.

Author Correction: Whole genome sequencing of metastatic colorectal cancer reveals prior treatment effects and specific metastasis features.

ProteoDisco: a flexible R approach to generate customized protein databases for extended search space of novel and variant proteins in proteogenomic studies.

Katdetectr: an R/bioconductor package utilizing unsupervised changepoint analysis for robust kataegis detection.

Fusion transcripts and their genomic breakpoints in polyadenylated and ribosomal RNA–minus RNA sequencing data.

The genomic landscape of metastatic castration-resistant prostate cancers reveals multiple distinct genotypes with potential clinical impact.

mFast‐SeqS‐based aneuploidy score in circulating cell‐free DNA is a prognostic biomarker in prostate cancer.

Molecular heterogeneity and early metastatic clone selection in testicular germ cell cancer development.

<sup>68</sup>Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.

<sup>68</sup>Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.

<sup>68</sup>Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.

<sup>68</sup>Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.

<sup>68</sup>Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.

<sup>68</sup>Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.

<sup>68</sup>Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.

68Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.

<sup>68</sup>Ga-PSMA guided bone biopsies for molecular diagnostics in metastatic prostate cancer patients.

Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons.

EGFRvIII transcriptome in glioblastoma: A meta-omics analysis.

Four Core Genotypes mice harbour a 3.2MB X-Y translocation that perturbs Tlr7 dosage.

Whole genome sequencing of metastatic colorectal cancer reveals prior treatment effects and specific metastasis features.