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Discordances between molecular assays for rifampicin resistance in Mycobacterium tuberculosis: frequency, mechanisms and clinical impact.
Published in:
2020
By:
- Rie, Annelies Van;
- Whitfield, Michael G;
- Vos, Elise De;
- Scott, Lesley;
- Silva, Pedro Da;
- Hayes, Cindy;
- Heupink, Tim H;
- Sirgel, Frederick A;
- Stevens, Wendy;
- Warren, Robin M;
- Van Rie, Annelies;
- De Vos, Elise;
- Da Silva, Pedro
Publication type:
journal article
Pharmacokinetics of adjusted-dose 8-hourly lopinavir/ritonavir in HIV-infected children co-treated with rifampicin.
Published in:
2019
By:
- Rabie, Helena;
- Rawizza, Holly;
- Zuidewind, Peter;
- Winckler, Jana;
- Zar, Heather;
- Rie, Annelies Van;
- Wiesner, Lubbe;
- McIlleron, Helen;
- Van Rie, Annelies
Publication type:
journal article
The potential use of rifabutin for treatment of patients diagnosed with rifampicin-resistant tuberculosis.
Published in:
2018
By:
- Whitfield, Michael G;
- Warren, Robin M;
- Mathys, Vanessa;
- Scott, Lesley;
- Vos, Elise De;
- Stevens, Wendy;
- Streicher, Elizabeth M;
- Groenen, Guido;
- Sirgel, Frederick A;
- Rie, Annelies Van;
- De Vos, Elise;
- Van Rie, Annelies
Publication type:
journal article
Effect of a Patient-Centered Phone Call by a Clinical Officer at Time of HIV Testing on Linkage to Care in Rural Kenya.
Published in:
Open Forum Infectious Diseases, 2018, v. 5, n. 6, p. N.PAG, doi. 10.1093/ofid/ofy126
By:
- Ayieko, James;
- Petersen, Maya L;
- Rie, Annelies van;
- Wafula, Erick;
- Opudo, Wilson;
- Clark, Tamara D;
- Kamya, Moses R;
- Balzer, Laura B;
- Cohen, Craig R;
- Bukusi, Elizabeth A
Publication type:
Article
The value of lateral flow urine lipoarabinomannan assay and empirical treatment in Xpert MTB/RIF ultra negative patients with presumptive TB: a prospective cohort study.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-04090-1
By:
- Kebede, Wakjira;
- Abebe, Gemeda;
- Gudina, Esayas Kebede;
- Van Rie, Annelies
Publication type:
Article
Second assessment of NeuroAIDS in Africa.
Published in:
Journal of NeuroVirology, 2008, v. 14, n. 2, p. 89, doi. 10.1080/13550280701829793
By:
- Robertson, Kevin;
- Kopnisky, Kathy;
- Hakim, James;
- Merry, Concepta;
- Nakasujja, Noeline;
- Hall, Colin;
- Traore, Moussa;
- Sacktor, Ned;
- Clifford, David;
- Newton, Charles;
- Van Rie, Annelies;
- Holding, Penny;
- Clements, Janice;
- Zink, Christine;
- Mielke, Jens;
- Hosseinipour, Mina;
- Lalloo, Umesh;
- Amod, Farida;
- Marra, Christina;
- Evans, Scott
Publication type:
Article
Qualitative characterizations of relationships among South African adolescent girls and young women and male partners: implications for engagement across HIV self‐testing and pre‐exposure prophylaxis prevention cascades.
Published in:
Journal of the International AIDS Society, 2020, v. 23, p. 1, doi. 10.1002/jia2.25521
By:
- Holmes, Leah E;
- Kaufman, Michelle R;
- Casella, Albert;
- Mudavanhu, Mutsa;
- Mutunga, Lillian;
- Polzer, Tara;
- Bassett, Jean;
- Van Rie, Annelies;
- Schwartz, Sheree
Publication type:
Article
A proposed novel framework for monitoring and evaluation of the cascade of HIV-associated TB care at the health facility level.
Published in:
Journal of the International AIDS Society, 2017, v. 20, p. 1, doi. 10.7448/IAS.20.1.21375
By:
- Hanrahan, Colleen F.;
- Van Rie, Annelies
Publication type:
Article
Client uptake of safer conception strategies: implementation outcomes from the Sakh'umndeni Safer Conception Clinic in South Africa.
Published in:
Journal of the International AIDS Society, 2017, v. 20, p. n/a, doi. 10.7448/IAS.20.2.21291
By:
- Schwartz, Sheree R;
- Bassett, Jean;
- Holmes, Charles B;
- Yende, Nompumelelo;
- Phofa, Rebecca;
- Sanne, Ian;
- Van Rie, Annelies
Publication type:
Article
Client uptake of safer conception strategies: implementation outcomes from the Sakh'umndeni Safer Conception Clinic in South Africa.
Published in:
Journal of the International AIDS Society, 2017, v. 20, p. 43, doi. 10.7448/IAS.20.2.21291
By:
- Schwartz, Sheree R.;
- Bassett, Jean;
- Holmes, Charles B.;
- Yende, Nompumelelo;
- Phofa, Rebecca;
- Sanne, Ian;
- Van Rie, Annelies
Publication type:
Article
A proposed novel framework for monitoring and evaluation of the cascade of HIV-associated TB care at the health facility level.
Published in:
Journal of the International AIDS Society, 2017, v. 20, p. 1, doi. 10.7448/IAS.20.1.21375
By:
- Hanrahan, Colleen F.;
- Van Rie, Annelies
Publication type:
Article
Neurodevelopment in perinatally HIV-infected children: a concern for adolescence.
Published in:
Journal of the International AIDS Society, 2013, v. 16, n. 1, p. 1, doi. 10.7448/IAS.16.1.18603
By:
- Laughton, Barbara;
- Cornell, Morna;
- Boivin, Michael;
- Van Rie, Annelies
Publication type:
Article
Training health care workers to promote HIV services for patients with tuberculosis in the Democratic Republic of Congo.
Published in:
Human Resources for Health, 2009, v. 7, p. 1, doi. 10.1186/1478-4491-7-23
By:
- Driessche, Koen Vanden;
- Sabue, Mulangu;
- Dufour, Wendy;
- Behets, Frieda;
- Van Rie, Annelies
Publication type:
Article
Perceptions of Community and Clinic-Based Adherence Clubs for Patients Stable on Antiretroviral Treatment: A Mixed Methods Study.
Published in:
AIDS & Behavior, 2020, v. 24, n. 4, p. 1197, doi. 10.1007/s10461-019-02681-8
By:
- Mudavanhu, Mutsa;
- West, Nora S.;
- Schwartz, Sheree R.;
- Mutunga, Lillian;
- Keyser, Valerie;
- Bassett, Jean;
- Van Rie, Annelies;
- Hanrahan, Colleen F.
Publication type:
Article
Comparison of Pharmacy-Based Measures of Adherence to Antiretroviral Therapy as Predictors of Virological Failure.
Published in:
AIDS & Behavior, 2015, v. 19, n. 4, p. 612, doi. 10.1007/s10461-014-0953-2
By:
- Henegar, Cassidy;
- Westreich, Daniel;
- Maskew, Mhairi;
- Brookhart, M.;
- Miller, William;
- Majuba, Pappie;
- Van Rie, Annelies
Publication type:
Article
Site-directed mutagenesis of Mycobacterium tuberculosis and functional validation to investigate potential bedaquiline resistance-causing mutations.
Published in:
Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-35563-0
By:
- Otum, Christian C.;
- Rivière, Emmanuel;
- Barnard, Monique;
- Loubser, Johannes;
- Williams, Monique J.;
- Streicher, Elizabeth M.;
- Van Rie, Annelies;
- Warren, Robin M.;
- Klopper, Marisa
Publication type:
Article
Transparency, trust, and community welfare: towards a precision public health ethics framework for the genomics era.
Published in:
Genome Medicine, 2020, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13073-020-00800-y
By:
- Juengst, Eric T.;
- Van Rie, Annelies
Publication type:
Article
High mobile phone ownership, but low Internet and email usage among pregnant, HIV-infected women attending antenatal care in Johannesburg.
Published in:
Journal of Telemedicine & Telecare, 2015, v. 21, n. 2, p. 104, doi. 10.1177/1357633X14566569
By:
- Clouse, Kate;
- Schwartz, Sheree R;
- Van Rie, Annelies;
- Bassett, Jean;
- Vermund, Sten H;
- Pettifor, Audrey E
Publication type:
Article
Correction: TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis.
Published in:
2023
By:
- Verboven, Lennert;
- Phelan, Jody;
- Heupink, Tim H.;
- Van Rie, Annelies
Publication type:
Correction Notice
A Bayesian approach to estimate the probability of resistance to bedaquiline in the presence of a genomic variant.
Published in:
PLoS ONE, 2023, v. 17, n. 6, p. 1, doi. 10.1371/journal.pone.0287019
By:
- Anlay, Degefaye Zelalem;
- Rivière, Emmanuel;
- Tu, Pham Hien Trang;
- Abrams, Steven;
- Van Rie, Annelies
Publication type:
Article
Implementation of Xpert MTB/RIF for routine point-of-care diagnosis of tuberculosis at the primary care level.
Published in:
SAMJ: South African Medical Journal, 2012, v. 102, n. 10, p. 805, doi. 10.7196/SAMJ.5851
By:
- Clouse, Kate;
- Page-Shipp, Liesl;
- Dansey, Heather;
- Moatlhodi, Bridgette;
- Scott, Lesley;
- Bassett, Jean;
- Stevens, Wendy;
- Sanne, Ian;
- Van Rie, Annelies
Publication type:
Article
A treatment recommender clinical decision support system for personalized medicine: method development and proof-of-concept for drug resistant tuberculosis.
Published in:
2022
By:
- Verboven, Lennert;
- Calders, Toon;
- Callens, Steven;
- Black, John;
- Maartens, Gary;
- Dooley, Kelly E.;
- Potgieter, Samantha;
- Warren, Robin M.;
- Laukens, Kris;
- Van Rie, Annelies
Publication type:
journal article
Health Care Providers' Challenges to High-Quality HIV Care and Antiretroviral Treatment Retention in Rural South Africa.
Published in:
Qualitative Health Research, 2021, v. 31, n. 4, p. 722, doi. 10.1177/1049732320983270
By:
- Julien, Aimée;
- Anthierens, Sibyl;
- Van Rie, Annelies;
- West, Rebecca;
- Maritze, Meriam;
- Twine, Rhian;
- Kahn, Kathleen;
- Lippman, Sheri A.;
- Pettifor, Audrey;
- Leslie, Hannah H.
Publication type:
Article
Paradoxical tuberculosis-associated immune reconstitution inflammatory syndrome in children.
Published in:
Pediatric Pulmonology, 2016, v. 51, n. 2, p. 157, doi. 10.1002/ppul.23221
By:
- Van Rie, Annelies;
- Sawry, Shobna;
- Link-Gelles, Ruth;
- Madhi, Shabir;
- Fairlie, Lee;
- Verwey, Charl;
- Mahomed, Nasreen;
- Murdoch, David;
- Moultrie, Harry
Publication type:
Article
Age of Pseudomonas aeruginosa acquisition and subsequent severity of cystic fibrosis lung disease.
Published in:
Pediatric Pulmonology, 2011, v. 46, n. 5, p. 497, doi. 10.1002/ppul.21397
By:
- Pittman, Jessica E.;
- Calloway, Elizabeth H.;
- Kiser, Michelle;
- Yeatts, John;
- Davis, Stephanie D.;
- Drumm, Mitchell L.;
- Schechter, Michael S.;
- Leigh, Margaret W.;
- Emond, Mary;
- Van Rie, Annelies;
- Knowles, Michael R.
Publication type:
Article
Emergence of resistance to bedaquiline.
Published in:
International Journal of Mycobacteriology, 2021, v. 10, p. 12, doi. 10.4103/2212-5531.307061
By:
- de Vos, Margaretha;
- Ley, Serej;
- Ismail, Nabila;
- Derendinger, Brigitta;
- Dippenaar, Anzaan;
- Grobbelaar, Melanie;
- Reuter, Anja;
- Daniels, Johnny;
- Dolby, Tania;
- Burns, Scott;
- Schito, Marco;
- van Rie, Annelies;
- Engelthaler, David;
- Allender, Chris;
- Metcalf, John;
- Posey, James;
- Theron, Grant;
- Cox, Helen;
- Warren, Rob
Publication type:
Article
Implementing early infant diagnosis of HIV infection at the primary care level: experiences and challenges in Malawi.
Published in:
Bulletin of the World Health Organization, 2012, v. 90, n. 9, p. 699, doi. 10.2471/BLT.11.100776
By:
- Dube, Queen;
- Dow, Anna;
- Chirambo, Chawanangwa;
- Lebov, Jill;
- Tenthani, Lyson;
- Moore, Michael;
- Heyderman, Robert S.;
- Van Rie, Annelies
Publication type:
Article
Effect of cotrimoxazole on mortality in HIV-infected adults on antiretroviral therapy: a systematic review and meta-analysis.
Published in:
Bulletin of the World Health Organization, 2012, v. 90, n. 2, p. 128, doi. 10.2471/BLT.11.093260
By:
- Suthar, Amitabh B.;
- Granich, Reuben;
- Mermin, Jonathan;
- Van Rie, Annelies
Publication type:
Article
Preventing vertical transmission of HIV in Kinshasa, Democratic Republic of the Congo: a baseline survey of 18 antenatal clinics.
Published in:
Bulletin of the World Health Organization, 2006, v. 84, n. 12, p. 969, doi. 10.2471/BLT.05.028217
By:
- Behets, Frieda M. T. F.;
- Matendo, Richard;
- Vaz, Lara M. E.;
- Kilese, Nick;
- Nanlele, Diderot;
- Kokolomami, Jack;
- Okitolando, Emile W.;
- Van Rie, Annelies
Publication type:
Article
Acceptability and Preferences among Men and Women for Male Involvement in Antenatal Care.
Published in:
Journal of Pregnancy, 2017, p. 1, doi. 10.1155/2017/4758017
By:
- Yende, Nompumelelo;
- Van Rie, Annelies;
- West, Nora S.;
- Bassett, Jean;
- Schwartz, Sheree R.
Publication type:
Article
The relationship between entomological indicators of Aedes aegypti abundance and dengue virus infection.
Published in:
PLoS Neglected Tropical Diseases, 2017, v. 11, n. 3, p. 1, doi. 10.1371/journal.pntd.0005429
By:
- Cromwell, Elizabeth A.;
- Stoddard, Steven T.;
- Barker, Christopher M.;
- Van Rie, Annelies;
- Messer, William B.;
- Meshnick, Steven R.;
- Morrison, Amy C.;
- Scott, Thomas W.
Publication type:
Article
A Global Perspective on Pyrazinamide Resistance: Systematic Review and Meta-Analysis.
Published in:
PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0133869
By:
- Whitfield, Michael G.;
- Soeters, Heidi M.;
- Warren, Robin M.;
- York, Talita;
- Sampson, Samantha L.;
- Streicher, Elizabeth M.;
- van Helden, Paul D.;
- van Rie, Annelies
Publication type:
Article
The Relationship between Alcohol Outlets, HIV Risk Behavior, and HSV-2 Infection among South African Young Women: A Cross-Sectional Study.
Published in:
PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0125510
By:
- Rosenberg, Molly;
- Pettifor, Audrey;
- Van Rie, Annelies;
- Thirumurthy, Harsha;
- Emch, Michael;
- Miller, William C.;
- Gómez-Olivé, F. Xavier;
- Twine, Rhian;
- Hughes, James P.;
- Laeyendecker, Oliver;
- Selin, Amanda;
- Kahn, Kathleen
Publication type:
Article
High Uptake of Systematic HIV Counseling and Testing and TB Symptom Screening at a Primary Care Clinic in South Africa.
Published in:
PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0105428
By:
- Van Rie, Annelies;
- Clouse, Kate;
- Hanrahan, Colleen;
- Selibas, Katerina;
- Sanne, Ian;
- Williams, Sharon;
- Kim, Peter;
- Bassett, Jean
Publication type:
Article
The Effect of Tuberculosis Treatment at Combination Antiretroviral Therapy Initiation on Subsequent Mortality: A Systematic Review and Meta-Analysis.
Published in:
PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0078073
By:
- Soeters, Heidi M.;
- Poole, Charles;
- Patel, Monita R.;
- Van Rie, Annelies
Publication type:
Article
Time to Treatment and Patient Outcomes among TB Suspects Screened by a Single Point-of-Care Xpert MTB/RIF at a Primary Care Clinic in Johannesburg, South Africa.
Published in:
PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0065421
By:
- Hanrahan, Colleen F.;
- Selibas, Katerina;
- Deery, Christopher B.;
- Dansey, Heather;
- Clouse, Kate;
- Bassett, Jean;
- Scott, Lesley;
- Stevens, Wendy;
- Sanne, Ian;
- Van Rie, Annelies
Publication type:
Article
Linkage to Care and Treatment for TB and HIV among People Newly Diagnosed with TB or HIV-Associated TB at a Large, Inner City South African Hospital.
Published in:
PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0049140
By:
- De Lima, Yara Voss;
- Evans, Denise;
- Page-Shipp, Liesl;
- Barnard, Antonia;
- Sanne, Ian;
- Menezes, Colin N.;
- Van Rie, Annelies
Publication type:
Article
Adult Vaccination Strategies for the Control of Pertussis in the United States: An Economic Evaluation Including the Dynamic Population Effects.
Published in:
PLoS ONE, 2009, v. 4, n. 7, p. 1, doi. 10.1371/journal.pone.0006284
By:
- Coudeville, Laurent;
- Van Rie, Annelies;
- Getsios, Denis;
- Caro, J. Jaime;
- Crépey, Pascal;
- Van Hung Nguyen
Publication type:
Article
Is HIV Infection a Risk Factor for Multi-Drug Resistant Tuberculosis? A Systematic Review.
Published in:
PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005561
By:
- Suchindran, Sujit;
- Brouwer, Emily S.;
- Van Rie, Annelies
Publication type:
Article
Survival in Women Exposed to Single-Dose Nevirapine for Prevention of Mother-to-Child Transmission of HIV: A Stochastic Model.
Published in:
Journal of Infectious Diseases, 2007, v. 195, n. 6, p. 837, doi. 10.1086/511276
By:
- Westreich, Daniel;
- Eron, Joseph;
- Behets, Frieda;
- van der Horst, Charles;
- Van Rie, Annelies
Publication type:
Article
Computed CD4 percentage as a low-cost method for determining pediatric antiretroviral treatment eligibility.
Published in:
BMC Infectious Diseases, 2008, v. 8, n. 1, p. 1, doi. 10.1186/1471-2334-8-31
By:
- Callens, Steven F. J.;
- Kitetele, Faustin;
- Lusiama, Jean;
- Shabani, Nicole;
- Edidi, Samuel;
- Colebunders, Robert;
- Behets, Frieda;
- Van Rie, Annelies
Publication type:
Article
A Visual Dosing Aid for First-line Pediatric Antiretroviral Treatment in Resource-poor Settings.
Published in:
Journal of Tropical Pediatrics, 2009, v. 55, n. 2, p. 135
By:
- Steven F. J. Callens;
- Daniel Westreich;
- Faustin Kitetele;
- Jean Lusiama;
- Nicole Shabani;
- Tom Belhorn;
- Robert Colebunders;
- Frieda Behets;
- Annelies Van Rie
Publication type:
Article
Pulmonary Sporothrix schenckii Infection in a HIV Positive Child.
Published in:
Journal of Tropical Pediatrics, 2006, v. 52, n. 2, p. 144
By:
- Steven F. J. Callens;
- Faustin Kitetele;
- Pauline Lukun;
- Patricia Lelo;
- Annelies Van Rie;
- Frieda Behets;
- Robert Colebunders
Publication type:
Article
Association between monocyte-to-lymphocyte ratio and tuberculin skin test positivity in HIV-positive adults.
Published in:
PLoS ONE, 2021, v. 16, n. 7, p. 1, doi. 10.1371/journal.pone.0253907
By:
- Van Ginderdeuren, Eva;
- Bassett, Jean;
- Hanrahan, Colleen F.;
- Van Rie, Annelies
Publication type:
Article
Novel health system strategies for tuberculin skin testing at primary care clinics: Performance assessment and health economic evaluation.
Published in:
PLoS ONE, 2021, v. 16, n. 2, p. 1, doi. 10.1371/journal.pone.0246523
By:
- Van Ginderdeuren, Eva;
- Bassett, Jean;
- Hanrahan, Colleen F.;
- Mutunga, Lillian;
- Van Rie, Annelies
Publication type:
Article
Air Pollution and Pulmonary Tuberculosis: A Nested Case-Control Study among Members of a Northern California Health Plan.
Published in:
Environmental Health Perspectives, 2016, v. 124, n. 6, p. 761, doi. 10.1289/ehp.1408166
By:
- Smith, Geneé S.;
- Van Den Eeden, Stephen K.;
- Garcia, Cynthia;
- Shan, Jun;
- Baxter, Roger;
- Herring, Amy H.;
- Richardson, David B.;
- Van Rie, Annelies;
- Emch, Michael;
- Gammon, Marilie D.
Publication type:
Article
Sequencing Mycobacteria and Algorithm-determined Resistant Tuberculosis Treatment (SMARTT): a study protocol for a phase IV pragmatic randomized controlled patient management strategy trial.
Published in:
2022
By:
- Van Rie, Annelies;
- De Vos, Elise;
- Costa, Emilyn;
- Verboven, Lennert;
- Ndebele, Felex;
- Heupink, Tim H.;
- Abrams, Steven;
- SMARTT team;
- Maraba, Noriah;
- Makkan, Heeran;
- Beattie, Trevor;
- Sibeko, Zandile Rachel;
- Bohlela, S'thabiso;
- Segwaba, Pulane;
- Ogunbayo, Emmanuel Ayodeji;
- Mhlambi, Nomadlozi;
- Wells, Felicia;
- Rigouts, Leen;
- Maartens, Gary;
- Conradie, Francesca
Publication type:
journal article
The Impact of Implementation Fidelity on Mortality Under a CD4-Stratified Timing Strategy for Antiretroviral Therapy in Patients With Tuberculosis.
Published in:
2015
By:
- Patel, Monita R.;
- Westreich, Daniel;
- Yotebieng, Marcel;
- Nana, Mbonze;
- Eron, Joseph J.;
- Behets, Frieda;
- Van Rie, Annelies
Publication type:
Journal Article
The Impact of Implementation Fidelity on Mortality Under a CD4-Stratified Timing Strategy for Antiretroviral Therapy in Patients With Tuberculosis.
Published in:
American Journal of Epidemiology, 2015, v. 181, n. 9, p. 714, doi. 10.1093/aje/kwu338
By:
- Patel, Monita R.;
- Westreich, Daniel;
- Yotebieng, Marcel;
- Nana, Mbonze;
- Eron, Joseph J.;
- Behets, Frieda;
- Van Rie, Annelies
Publication type:
Article
Detection of minor variants in Mycobacterium tuberculosis whole genome sequencing data.
Published in:
Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab541
By:
- Goossens, Sander N;
- Heupink, Tim H;
- Vos, Elise De;
- Dippenaar, Anzaan;
- Vos, Margaretha De;
- Warren, Rob;
- Rie, Annelies Van
Publication type:
Article

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