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Discrimination of yeast genes involved in methionine and phosphate metabolism on the basis of upstream motifs.
- Published in:
- Bioinformatics, 2005, v. 21, n. 17, p. 3490, doi. 10.1093/bioinformatics/bti558
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- Publication type:
- Article
Metrics for comparing regulatory sequences on the basis of pattern counts.
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- Bioinformatics, 2004, v. 20, n. 3, p. 399, doi. 10.1093/bioinformatics/btg425
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- Publication type:
- Article
Transcriptional and epigenetic signatures of zygotic genome activation during early drosophila embryogenesis.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-226
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- Publication type:
- Article
Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes.
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- Molecular Biology & Evolution, 2008, v. 25, n. 4, p. 762, doi. 10.1093/molbev/msn023
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- Publication type:
- Article
COVID-19 epidemiologic surveillance using wastewater.
- Published in:
- 2021
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- Publication type:
- Editorial
Tracing the origins of SARS-COV-2 in coronavirus phylogenies: a review.
- Published in:
- Environmental Chemistry Letters, 2021, v. 19, n. 2, p. 769, doi. 10.1007/s10311-020-01151-1
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- Publication type:
- Article
An overview of data models for the analysis of biochemical pathways.
- Published in:
- Briefings in Bioinformatics, 2003, v. 4, n. 3, p. 246, doi. 10.1093/bib/4.3.246
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- Publication type:
- Article
From molecular activities and processes to biological function.
- Published in:
- Briefings in Bioinformatics, 2001, v. 2, n. 1, p. 81, doi. 10.1093/bib/2.1.81
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- Publication type:
- Article
Assessing computational tools for the discovery of transcription factor binding sites.
- Published in:
- Nature Biotechnology, 2005, v. 23, n. 1, p. 137, doi. 10.1038/nbt1053
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- Publication type:
- Article
Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolution.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-37
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- Publication type:
- Article
In silico identification of NF-kappaB-regulated genes in pancreatic beta-cells.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-55
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- Publication type:
- Article
Sequanix: a dynamic graphical interface for Snakemake workflows.
- Published in:
- Bioinformatics, 2018, v. 34, n. 11, p. 1934, doi. 10.1093/bioinformatics/bty034
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- Publication type:
- Article
In vitro screening of a FDA approved chemical library reveals potential inhibitors of SARS-CoV-2 replication.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-70143-6
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- Publication type:
- Article
Deciphering the adaptation strategies of Desulfovibrio piezophilus to hydrostatic pressure through metabolic and transcriptional analyses.
- Published in:
- Environmental Microbiology Reports, 2016, v. 8, n. 4, p. 520, doi. 10.1111/1758-2229.12427
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- Publication type:
- Article
Clusters of Conserved Beta Cell Marker Genes for Assessment of Beta Cell Phenotype.
- Published in:
- PLoS ONE, 2011, v. 6, n. 9, p. 1, doi. 10.1371/journal.pone.0024134
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- Publication type:
- Article
RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach.
- Published in:
- Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.567471
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- Publication type:
- Article
biotoolsSchema: a formalized schema for bioinformatics software description.
- Published in:
- GigaScience, 2021, v. 10, n. 1, p. 1, doi. 10.1093/gigascience/giaa157
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- Publication type:
- Article
Transcriptional Profiling of Midguts Prepared from Trypanosoma/T. congolense-Positive Glossina palpalis palpalis collected from Two Distinct cameroonian Foci: coordinated signatures of the Midguts' remodeling as T. congolense-supportive niches.
- Published in:
- Frontiers in Immunology, 2017, p. 1, doi. 10.3389/fimmu.2017.00876
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- Publication type:
- Article
RSAT 2022: regulatory sequence analysis tools.
- Published in:
- Nucleic Acids Research, 2022, v. 50, n. W1, p. W670, doi. 10.1093/nar/gkac312
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- Publication type:
- Article
RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections.
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- Nucleic Acids Research, 2017, v. 45, n. 13, p. 1, doi. 10.1093/nar/gkx314
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- Publication type:
- Article
RSAT 2015: Regulatory Sequence Analysis Tools.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. W1, p. W50, doi. 10.1093/nar/gkv362
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- Publication type:
- Article
Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape.
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- Nucleic Acids Research, 2015, v. 43, n. 4, p. 1, doi. 10.1093/nar/gku1280
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- Publication type:
- Article
RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets.
- Published in:
- Nucleic Acids Research, 2012, v. 40, n. 4, p. e31, doi. 10.1093/nar/gkr1104
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- Publication type:
- Article
Unraveling networks of co-regulated genes on the sole basis of genome sequences.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 15, p. 6340
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- Publication type:
- Article
RSAT 2011: regulatory sequence analysis tools.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W86, doi. 10.1093/nar/gkr377
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- Publication type:
- Article
Theoretical and empirical quality assessment of transcription factor-binding motifs.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 3, p. 808, doi. 10.1093/nar/gkq710
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- Publication type:
- Article
Pathway discovery in metabolic networks by subgraph extraction.
- Published in:
- Bioinformatics, 2010, v. 26, n. 9, p. 1211, doi. 10.1093/bioinformatics/btq105
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- Publication type:
- Article
In response to ‘Can sugars be produced from fatty acids? A test case for pathway analysis tools’.
- Published in:
- Bioinformatics, 2009, v. 25, n. 23, p. 3202, doi. 10.1093/bioinformatics/btp557
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- Publication type:
- Article
Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl.
- Published in:
- Bioinformatics, 2009, v. 25, n. 20, p. 2739, doi. 10.1093/bioinformatics/btp519
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- Publication type:
- Article
info-gibbs: a motif discovery algorithm that directly optimizes information content during sampling.
- Published in:
- Bioinformatics, 2009, v. 25, n. 20, p. 2715, doi. 10.1093/bioinformatics/btp490
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- Publication type:
- Article
Prophinder: a computational tool for prophage prediction in prokaryotic genomes.
- Published in:
- Bioinformatics, 2008, v. 24, n. 6, p. 863, doi. 10.1093/bioinformatics/btn043
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- Publication type:
- Article
Transcription factor regulation can be accurately predicted from the presence of target gene signatures in microarray gene expression data.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 11, p. e120, doi. 10.1093/nar/gkq149
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- Publication type:
- Article
NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W444, doi. 10.1093/nar/gkn336
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- Publication type:
- Article
RSAT: regulatory sequence analysis tools.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W119, doi. 10.1093/nar/gkn304
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- Publication type:
- Article
Metabolic PathFinding: inferring relevant pathways in biochemical networks.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w326, doi. 10.1093/nar/gki437
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- Publication type:
- Article
Regulatory Sequence Analysis Tools.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 13, p. 3593, doi. 10.1093/nar/gkg567
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- Publication type:
- Article
Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns.
- Published in:
- Nucleic Acids Research, 2003, v. 31, n. 4, p. 1121, doi. 10.1093/nar/gkg213
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- Publication type:
- Article
Discovering regulatory elements in non-coding sequences by analysis of spaced dyads.
- Published in:
- Nucleic Acids Research, 2000, v. 28, n. 8, p. 1808, doi. 10.1093/nar/28.8.1808
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- Publication type:
- Article
Statistical analysis of yeast genomic downstream sequences reveals putative polyadenylation signals.
- Published in:
- Nucleic Acids Research, 2000, v. 28, n. 4, p. 1000, doi. 10.1093/nar/28.4.1000
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- Publication type:
- Article
RegulonDB (version 2.0): a database on transcriptional regulation in Escherichia coli.
- Published in:
- Nucleic Acids Research, 1999, v. 27, n. 1, p. 59, doi. 10.1093/nar/27.1.59
- By:
- Publication type:
- Article
Retrouver les origines du SARS-CoV-2 dans les phylogénies de coronavirus.
- Published in:
- Médecine Sciences, 2020, v. 36, n. 8/9, p. 783, doi. 10.1051/medsci/2020123
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- Publication type:
- Article
FAIR+E pathogen data for surveillance and research: lessons from COVID-19.
- Published in:
- Frontiers in Public Health, 2023, p. 1, doi. 10.3389/fpubh.2023.1289945
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- Publication type:
- Article
Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example.
- Published in:
- Plant Physiology, 2021, v. 185, n. 3, p. 1242, doi. 10.1093/plphys/kiaa091
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- Publication type:
- Article