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Prior Biological Knowledge Improves Genomic Prediction of Growth-Related Traits in Arabidopsis thaliana.
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- Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.609117
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Novel routes towards bioplastics from plants: elucidation of the methylperillate biosynthesis pathway from Salvia dorisiana trichomes.
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- Journal of Experimental Botany, 2020, v. 71, n. 10, p. 3052, doi. 10.1093/jxb/eraa086
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- Article
Towards recommendations for metadata and data handling in plant phenotyping.
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- Journal of Experimental Botany, 2015, v. 66, n. 18, p. 5417, doi. 10.1093/jxb/erv271
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- Article
The (r)evolution of gene regulatory networks controlling Arabidopsis plant reproduction: a two-decade history.
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- Journal of Experimental Botany, 2014, v. 65, n. 17, p. 4731, doi. 10.1093/jxb/eru233
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- Article
Analysis of functional redundancies within the Arabidopsis TCP transcription factor family.
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- Journal of Experimental Botany, 2013, v. 64, n. 18, p. 5673, doi. 10.1093/jxb/ert337
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- Article
Continuous-time modeling of cell fate determination in Arabidopsis flowers.
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- BMC Systems Biology, 2010, v. 4, p. 101, doi. 10.1186/1752-0509-4-101
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- Article
Selected proceedings of Machine Learning in Systems Biology: MLSB 2016.
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- BMC Bioinformatics, 2016, v. 17, p. 51, doi. 10.1186/s12859-016-1305-1
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- Article
PRI-CAT: a web-tool for the analysis, storage and visualization of plant ChIP-seq experiments.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W524, doi. 10.1093/nar/gkr373
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- Article
Comparative analysis of binding patterns of MADS-domain proteins in <italic>Arabidopsis thaliana</italic>.
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- BMC Plant Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12870-018-1348-8
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- Article
Divergent regulation of Arabidopsis SAUR genes: a focus on the SAUR10-clade.
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- BMC Plant Biology, 2017, v. 17, p. 1, doi. 10.1186/s12870-017-1210-4
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- Article
Data-driven docking for the study of biomolecular complexes.
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- FEBS Journal, 2005, v. 272, n. 2, p. 293, doi. 10.1111/j.1742-4658.2004.04473.x
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- Article
DNA sequence and shape are predictive for meiotic crossovers throughout the plant kingdom.
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- Plant Journal, 2018, v. 95, n. 4, p. 686, doi. 10.1111/tpj.13979
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- Article
A Quantitative and Dynamic Model of the Arabidopsis Flowering Time Gene Regulatory Network.
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- PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0116973
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- Article
Inferring the Gene Network Underlying the Branching of Tomato Inflorescence.
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- PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0089689
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- Article
Interactome-Wide Prediction of Protein-Protein Binding Sites Reveals Effects of Protein Sequence Variation in Arabidopsis thaliana.
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- PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047022
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- Article
Predicting the Impact of Alternative Splicing on Plant MADS Domain Protein Function.
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- PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0030524
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- Article
Mutational Robustness of Gene Regulatory Networks.
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- PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0030591
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- Article
Simulation of Organ Patterning on the Floral Meristem Using a Polar Auxin Transport Model.
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- PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0028762
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- Article
Bayesian Markov Random Field Analysis for Protein Function Prediction Based on Network Data.
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- PLoS ONE, 2010, v. 5, n. 2, p. 1, doi. 10.1371/journal.pone.0009293
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- Article
Individual lipid transfer proteins from Tanacetum parthenium show different specificity for extracellular accumulation of sesquiterpenes.
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- Plant Molecular Biology, 2023, v. 111, n. 1/2, p. 153, doi. 10.1007/s11103-022-01316-2
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- Article
Solvated protein-protein docking using Kyte-Doolittle-based water preferences.
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- Proteins, 2013, v. 81, n. 3, p. 510, doi. 10.1002/prot.24210
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- Article
HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets.
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- Proteins, 2007, v. 69, n. 4, p. 726, doi. 10.1002/prot.21723
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- Article
Prioritization of candidate genes in QTL regions based on associations between traits and biological processes.
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- BMC Plant Biology, 2014, v. 14, n. 1, p. 84, doi. 10.1186/s12870-014-0330-3
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- Article
Assessing the contribution of alternative splicing to proteome diversity in Arabidopsis thaliana using proteomics data.
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- BMC Plant Biology, 2011, v. 11, n. 1, p. 82, doi. 10.1186/1471-2229-11-82
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- Article
Combining NMR Relaxation with Chemical Shift Perturbation Data to Drive Protein–protein Docking.
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- Journal of Biomolecular NMR, 2006, v. 34, n. 4, p. 237, doi. 10.1007/s10858-006-0024-8
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- Article
Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome.
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- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-154
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- Article
Interploidy Introgression Shaped Adaptation during the Origin and Domestication History of Brassica napus.
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- Molecular Biology & Evolution, 2023, v. 40, n. 9, p. 1, doi. 10.1093/molbev/msad199
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- Article
Domestication Shapes Recombination Patterns in Tomato.
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- Molecular Biology & Evolution, 2022, v. 39, n. 1, p. 1, doi. 10.1093/molbev/msab287
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- Article
Root branching under high salinity requires auxin-independent modulation of LATERAL ORGAN BOUNDARY DOMAIN 16 function.
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- Plant Cell, 2024, v. 36, n. 4, p. 899, doi. 10.1093/plcell/koad317
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- Article
Protein interaction mapping reveals widespread targeting of development‐related host transcription factors by phytoplasma effectors.
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- Plant Journal, 2024, v. 117, n. 4, p. 1281, doi. 10.1111/tpj.16546
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- Article
Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3317, doi. 10.1093/nar/gkl412
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- Article
Chasing breeding footprints through structural variations in Cucumis melo and wild relatives.
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- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 1, p. 1, doi. 10.1093/g3journal/jkaa038
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- Article
Gene Ontology consistent protein function prediction: the FALCON algorithm applied to six eukaryotic genomes.
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- Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-10
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- Article
A catalogue of recombination coldspots in interspecific tomato hybrids.
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- PLoS Genetics, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.pgen.1011336
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- Article
Sequence Motifs in MADS Transcription Factors Responsible for Specificity and Diversification of Protein-Protein Interaction.
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- PLoS Computational Biology, 2010, v. 6, n. 11, p. 1, doi. 10.1371/journal.pcbi.1001017
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- Article
Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases.
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- PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008197
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- Article
A gene regulatory network critical for axillary bud dormancy directly controlled by Arabidopsis BRANCHED1.
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- New Phytologist, 2024, v. 241, n. 3, p. 1193, doi. 10.1111/nph.19420
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- Article
The tomato cytochrome P450 CYP712G1 catalyses the double oxidation of orobanchol en route to the rhizosphere signalling strigolactone, solanacol.
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- New Phytologist, 2022, v. 235, n. 5, p. 1884, doi. 10.1111/nph.18272
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- Article
Rice cytochrome P450 MAX1 homologs catalyze distinct steps in strigolactone biosynthesis.
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- Nature Chemical Biology, 2014, v. 10, n. 12, p. 1028, doi. 10.1038/nchembio.1660
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- Article
Solvated docking: introducing water into the modelling of biomolecular complexes.
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- Bioinformatics, 2006, v. 22, n. 19, p. 2340, doi. 10.1093/bioinformatics/btl395
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- Article
Contribution of homoeologous exchange to domestication of polyploid Brassica.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03370-z
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- Article
Transcription Factor-Mediated Control of Anthocyanin Biosynthesis in Vegetative Tissues.
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- Plant Physiology, 2018, v. 176, n. 2, p. 1862, doi. 10.1104/pp.17.01662
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- Article
Characterization of SOC1's Central Role in Flowering by the Identification of Its Upstream and Downstream Regulators.
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- Plant Physiology, 2012, v. 160, n. 1, p. 433, doi. 10.1104/pp.112.202614
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- Article
Genome-Wide Computational Function Prediction of Arabidopsis Proteins by Integration of Multiple Data Sources.
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- Plant Physiology, 2011, v. 155, n. 1, p. 271, doi. 10.1104/pp.110.162164
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- Article
The rise of scientific machine learning: a perspective on combining mechanistic modelling with machine learning for systems biology.
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- Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1407994
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- Article
Sequence-based analysis of protein degradation rates.
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- Proteins, 2017, v. 85, n. 9, p. 1593, doi. 10.1002/prot.25323
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- Article
Conserved and variable correlated mutations in the plant MADS protein network.
- Published in:
- BMC Genomics, 2010, v. 11, p. 607, doi. 10.1186/1471-2164-11-607
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- Article
Transcriptional Feedback in Plant Growth and Defense by PIFs, BZR1, HY5, and MYC Transcription Factors.
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- Plant Molecular Biology Reporter, 2023, v. 41, n. 1, p. 59, doi. 10.1007/s11105-022-01351-9
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- Article
Geometricus represents protein structures as shape-mers derived from moment invariants.
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- Bioinformatics, 2020, v. 36, p. i718, doi. 10.1093/bioinformatics/btaa839
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- Article
Coevolution-based prediction of protein–protein interactions in polyketide biosynthetic assembly lines.
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- Bioinformatics, 2020, v. 36, n. 19, p. 4846, doi. 10.1093/bioinformatics/btaa595
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- Article