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Quasi‐variances.
Published in:
Biometrika, 2004, v. 91, n. 1, p. 65
By:
- Firth, David;
- De Menezes, Renée X.
Publication type:
Article
Functional Screen for microRNAs Suppressing Anchorage-Independent Growth in Human Cervical Cancer Cells.
Published in:
International Journal of Molecular Sciences, 2022, v. 23, n. 9, p. 4791, doi. 10.3390/ijms23094791
By:
- Huseinovic, Angelina;
- Jaspers, Annelieke;
- van Splunter, Annina P.;
- Sørgård, Hanne;
- Wilting, Saskia M.;
- Swarts, Dorian R. A.;
- van der Meulen, Ida H.;
- van Beusechem, Victor W.;
- de Menezes, Renée X.;
- Steenbergen, Renske D. M.
Publication type:
Article
mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance.
Published in:
Nucleic Acids Research, 2011, v. 39, n. 2, p. 556, doi. 10.1093/nar/gkq790
By:
- 't Hoen, Peter A. C.;
- Hirsch, Michael;
- Meijer, Emile J. de;
- Menezes, Renée X. de;
- van Ommen, Gertjan G.J.;
- Dunnen, Johan T. den
Publication type:
Article
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms.
Published in:
Nucleic Acids Research, 2008, v. 36, n. 21, p. e141, doi. 10.1093/nar/gkn705
By:
- 't Hoen, Peter A. C.;
- Ariyurek, Yavuz;
- Thygesen, Helene H.;
- Vreugdenhil, Erno;
- Vossen, Rolf H. A. M.;
- de Menezes, Renée X.;
- Boer, Judith M.;
- van Ommen, Gert-Jan B.;
- den Dunnen, Johan T.
Publication type:
Article
A test for detecting differential indirect trans effects between two groups of samples.
Published in:
Statistical Applications in Genetics & Molecular Biology, 2018, v. 17, n. 5, p. N.PAG, doi. 10.1515/sagmb-2017-0058
By:
- Chaturvedi, Nimisha;
- Menezes, Renée X. de;
- Goeman, Jelle J.;
- Wieringen, Wessel van
Publication type:
Article
General power and sample size calculations for high-dimensional genomic data.
Published in:
Statistical Applications in Genetics & Molecular Biology, 2013, v. 12, n. 4, p. 449, doi. 10.1515/sagmb-2012-0046
By:
- van Iterson, Maarten;
- van de Wiel, Mark A.;
- Boer, Judith M.;
- de Menezes, Renée X.
Publication type:
Article
A new approach to describe the taxonomic structure of microbiome and its application to assess the relationship between microbial niches.
Published in:
BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-023-05575-8
By:
- Pappalardo, Vincent Y.;
- Azarang, Leyla;
- Zaura, Egija;
- Brandt, Bernd W.;
- de Menezes, Renée X.
Publication type:
Article
Neoadjuvant cisplatin and paclitaxel modulate tumor-infiltrating T cells in patients with cervical cancer.
Published in:
Cancer Immunology, Immunotherapy, 2019, v. 68, n. 11, p. 1759, doi. 10.1007/s00262-019-02412-x
By:
- Heeren, A. Marijne;
- van Luijk, Iske F.;
- Lakeman, Joost;
- Pocorni, Noëlle;
- Kole, Jeroen;
- de Menezes, Renée X.;
- Kenter, Gemma G.;
- Bosse, Tjalling;
- de Kroon, Cornelis D.;
- Jordanova, Ekaterina S.
Publication type:
Article
A global × global test for testing associations between two large sets of variables.
Published in:
Biometrical Journal, 2017, v. 59, n. 1, p. 145, doi. 10.1002/bimj.201500106
By:
- Chaturvedi, Nimisha;
- de Menezes, Renée X.;
- Goeman, Jelle J.
Publication type:
Article
A Reed–Frost model taking into account uncertainties in the diagnostic of the infection
Published in:
Bulletin of Mathematical Biology, 2004, v. 66, n. 4, p. 689, doi. 10.1016/j.bulm.2003.10.003
By:
- de Menezes, Renée X.;
- Ortega, Neli R.S.;
- Massad, Eduardo
Publication type:
Article
Can subtle changes in gene expression be consistently detected with different microarray platforms?
Published in:
BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-124
By:
- Pedotti, Paola;
- 't Hoen, Peter A. C.;
- Vreugdenhil, Erno;
- Schenk, Geert J.;
- Vossen, Rolf H. A. M.;
- Ariyurek, Yavuz;
- de Hollander, Mattias;
- Kuiper, Rowan;
- van Ommen, Gertjan J. B.;
- den Dunnen, Johan T.;
- Boer, Judith M.;
- de Menezes, Renée X.
Publication type:
Article
Gene expression variation between mouse inbred strains.
Published in:
BMC Genomics, 2004, v. 5, p. 57, doi. 10.1186/1471-2164-5-57
By:
- Turk, Rolf;
- AC 't Hoen, Peter;
- Sterrenburg, Ellen;
- De Menezes, Renée X.;
- De Meijer, Emile J.;
- Boer, Judith M.;
- Van Ommen, Gert-Jan B.;
- Den Dunnen, Johan T.
Publication type:
Article
A test for comparing two groups of samples when analyzing multiple omics profiles.
Published in:
BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-236
By:
- Chaturvedi, Nimisha;
- Goeman, Jelle J.;
- Boer, Judith M.;
- van Wieringen, Wessel N.;
- de Menezes, Renée X.
Publication type:
Article
Chemopreventive targeted treatment of head and neck precancer by Wee1 inhibition.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-58509-2
By:
- van Harten, Anne M.;
- de Boer, D. Vicky;
- Martens-de Kemp, Sanne R.;
- Buijze, Marijke;
- Ganzevles, Sonja H.;
- Hunter, Keith D.;
- Leemans, C. René;
- van Beusechem, Victor W.;
- Wolthuis, Rob M. F.;
- de Menezes, Renée X.;
- Brakenhoff, Ruud H.
Publication type:
Article
Genomic profiling by DNA amplification of laser capture microdissected tissues and array CGH.
Published in:
Nucleic Acids Research, 2004, v. 32, n. 19, p. e146, doi. 10.1093/nar/gnh142
By:
- Cardoso, Joana;
- Molenaar, Lia;
- de Menezes, Renée X.;
- Rosenberg, Carla;
- Morreau, Hans;
- Möslein, Gabriela;
- Fodde, Riccardo;
- Boer, Judith M.
Publication type:
Article
Intensity‐based analysis of two‐colour microarrays enables efficient and flexible hybridization designs.
Published in:
Nucleic Acids Research, 2004, v. 32, n. 4, p. e41
By:
- ’t Hoen, Peter A. C.;
- Turk, Rolf;
- Boer, Judith M.;
- Sterrenburg, Ellen;
- de Menezes, Renée X.;
- van Ommen, Gert‐Jan B.;
- den Dunnen, Johan T.
Publication type:
Article
Analysis of small-sample clinical genomics studies using multi-parameter shrinkage: application to high-throughput RNA interference screening.
Published in:
BMC Medical Genomics, 2013, v. 6, n. Suppl 2, p. 1, doi. 10.1186/1755-8794-6-S2-S1
By:
- van de Wiel, Mark A.;
- de Menezes, Renée X.;
- Siebring-van Olst, Ellen;
- van Beusechem, Victor W.
Publication type:
Article
Electronic Nose Sensor Drift Affects Diagnostic Reliability and Accuracy of Disease-Specific Algorithms.
Published in:
Sensors (14248220), 2022, v. 22, n. 23, p. 9246, doi. 10.3390/s22239246
By:
- Bosch, Sofie;
- de Menezes, Renée X.;
- Pees, Suzanne;
- Wintjens, Dion J.;
- Seinen, Margien;
- Bouma, Gerd;
- Kuyvenhoven, Johan;
- Stokkers, Pieter C. F.;
- de Meij, Tim G. J.;
- de Boer, Nanne K. H.
Publication type:
Article
Distinct Patterns of Myeloid Cell Infiltration in Patients With hrHPV-Positive and hrHPV-Negative Penile Squamous Cell Carcinoma: The Importance of Assessing Myeloid Cell Densities Within the Spatial Context of the Tumor.
Published in:
Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.682030
By:
- Rafael, Tynisha S.;
- de Vries, Hielke M.;
- Ottenhof, Sarah R.;
- Hofland, Ingrid;
- Broeks, Annegien;
- de Jong, Jeroen;
- Bekers, Elise;
- Horenblas, Simon;
- de Menezes, Renée X.;
- Jordanova, Ekaterina S.;
- Brouwer, Oscar R.
Publication type:
Article
Fused lasso algorithm for Cox′ proportional hazards and binomial logit models with application to copy number profiles.
Published in:
Biometrical Journal, 2014, v. 56, n. 3, p. 477, doi. 10.1002/bimj.201200241
By:
- Chaturvedi, Nimisha;
- de Menezes, Renée X.;
- Goeman, Jelle J.
Publication type:
Article
Rscreenorm: normalization of CRISPR and siRNA screen data for more reproducible hit selection.
Published in:
BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2306-z
By:
- Bachas, Costa;
- Hodzic, Jasmina;
- van der Mijn, Johannes C.;
- Stoepker, Chantal;
- Verheul, Henk M. W.;
- Wolthuis, Rob M. F.;
- Felley-Bosco, Emanuela;
- van Wieringen, Wessel N.;
- van Beusechem, Victor W.;
- Brakenhoff, Ruud H.;
- de Menezes, Renée X.
Publication type:
Article

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