OpenURL Connection Search

Select item for more details and to access through your institution.

Simultaneous Viral Whole-Genome Sequencing and Differential Expression Profiling in Respiratory Syncytial Virus Infection of Infants.
Published in:
2020
By:
- Lin, Gu-Lung;
- Golubchik, Tanya;
- Drysdale, Simon;
- O'Connor, Daniel;
- Jefferies, Kimberley;
- Brown, Anthony;
- Cesare, Mariateresa de;
- Bonsall, David;
- Ansari, M Azim;
- Aerssens, Jeroen;
- Bont, Louis;
- Openshaw, Peter;
- Martinón-Torres, Federico;
- Bowden, Rory;
- Pollard, Andrew J;
- Investigators, RESCEU;
- de Cesare, Mariateresa;
- RESCEU Investigators
Publication type:
journal article
Performance of a high-throughput next-generation sequencing method for analysis of HIV drug resistance and viral load.
Published in:
2020
By:
- Fogel, Jessica M;
- Bonsall, David;
- Cummings, Vanessa;
- Bowden, Rory;
- Golubchik, Tanya;
- Cesare, Mariateresa de;
- Wilson, Ethan A;
- Gamble, Theresa;
- Rio, Carlos del;
- Batey, D Scott;
- Mayer, Kenneth H;
- Farley, Jason E;
- Hughes, James P;
- Remien, Robert H;
- Beyrer, Chris;
- Fraser, Christophe;
- Eshleman, Susan H;
- de Cesare, Mariateresa;
- Del Rio, Carlos
Publication type:
journal article
Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data.
Published in:
Bioinformatics, 2024, v. 40, n. 10, p. 1, doi. 10.1093/bioinformatics/btae591
By:
- Mayne, Richard;
- Secret, Shannah;
- Geoghegan, Cyndi;
- Trebes, Amy;
- Kean, Kai;
- Reid, Kaitlin;
- Lin, Gu-Lung;
- Ansari, M Azim;
- Cesare, Mariateresa de;
- Bonsall, David;
- Elliott, Ivo;
- Piazza, Paolo;
- Brown, Anthony;
- Bray, James;
- Knight, Julian C;
- Harvala, Heli;
- Breuer, Judith;
- Simmonds, Peter;
- Bowden, Rory J;
- Golubchik, Tanya
Publication type:
Article
Prolonged Zika Virus RNA Detection in Semen of Immunosuppressed Patient.
Published in:
2019
By:
- Petridou, Christina;
- Bonsall, David;
- Ahmed, Aleem;
- Roberts, Mark;
- Bell, Carolyn;
- de Cesare, Mariateresa;
- Bowden, Rory;
- Graham, Victoria;
- Bailey, Daniel;
- Simpson, Andrew;
- Aarons, Emma
Publication type:
journal article
Publisher Correction: Distinct patterns of within-host virus populations between two subgroups of human respiratory syncytial virus.
Published in:
2021
By:
- Lin, Gu-Lung;
- Drysdale, Simon B.;
- Snape, Matthew D.;
- O'Connor, Daniel;
- Brown, Anthony;
- MacIntyre-Cockett, George;
- Mellado-Gomez, Esther;
- de Cesare, Mariateresa;
- Bonsall, David;
- Ansari, M. Azim;
- Öner, Deniz;
- Aerssens, Jeroen;
- Butler, Christopher;
- Bont, Louis;
- Openshaw, Peter;
- Martinón-Torres, Federico;
- Nair, Harish;
- Bowden, Rory;
- RESCEU Investigators;
- Campbell, Harry
Publication type:
Correction Notice
Distinct patterns of within-host virus populations between two subgroups of human respiratory syncytial virus.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25265-4
By:
- Lin, Gu-Lung;
- Drysdale, Simon B.;
- Snape, Matthew D.;
- O'Connor, Daniel;
- Brown, Anthony;
- MacIntyre-Cockett, George;
- Mellado-Gomez, Esther;
- de Cesare, Mariateresa;
- Bonsall, David;
- Ansari, M. Azim;
- Öner, Deniz;
- Aerssens, Jeroen;
- Butler, Christopher;
- Bont, Louis;
- Openshaw, Peter;
- Martinón-Torres, Federico;
- Nair, Harish;
- Bowden, Rory;
- RESCEU Investigators;
- Campbell, Harry
Publication type:
Article
Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46648-3
By:
- Lin, Gu-Lung;
- Drysdale, Simon B.;
- Snape, Matthew D.;
- O'Connor, Daniel;
- Brown, Anthony;
- MacIntyre-Cockett, George;
- Mellado-Gomez, Esther;
- de Cesare, Mariateresa;
- Ansari, M. Azim;
- Bonsall, David;
- Bray, James E.;
- Jolley, Keith A.;
- Bowden, Rory;
- Aerssens, Jeroen;
- Bont, Louis;
- Openshaw, Peter J. M.;
- Martinon-Torres, Federico;
- Nair, Harish;
- Golubchik, Tanya;
- Pollard, Andrew J.
Publication type:
Article
Flexible and cost-effective genomic surveillance of P. falciparum malaria with targeted nanopore sequencing.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-45688-z
By:
- de Cesare, Mariateresa;
- Mwenda, Mulenga;
- Jeffreys, Anna E.;
- Chirwa, Jacob;
- Drakeley, Chris;
- Schneider, Kammerle;
- Mambwe, Brenda;
- Glanz, Karolina;
- Ntalla, Christina;
- Carrasquilla, Manuela;
- Portugal, Silvia;
- Verity, Robert J.;
- Bailey, Jeffrey A.;
- Ghinai, Isaac;
- Busby, George B.;
- Hamainza, Busiku;
- Hawela, Moonga;
- Bridges, Daniel J.;
- Hendry, Jason A.
Publication type:
Article
Flexible and cost-effective genomic surveillance of P. falciparum malaria with targeted nanopore sequencing.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-45688-z
By:
- de Cesare, Mariateresa;
- Mwenda, Mulenga;
- Jeffreys, Anna E.;
- Chirwa, Jacob;
- Drakeley, Chris;
- Schneider, Kammerle;
- Mambwe, Brenda;
- Glanz, Karolina;
- Ntalla, Christina;
- Carrasquilla, Manuela;
- Portugal, Silvia;
- Verity, Robert J.;
- Bailey, Jeffrey A.;
- Ghinai, Isaac;
- Busby, George B.;
- Hamainza, Busiku;
- Hawela, Moonga;
- Bridges, Daniel J.;
- Hendry, Jason A.
Publication type:
Article
Sequencing of human genomes with nanopore technology.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-09637-5
By:
- Bowden, Rory;
- Davies, Robert W.;
- Heger, Andreas;
- Pagnamenta, Alistair T.;
- de Cesare, Mariateresa;
- Oikkonen, Laura E.;
- Parkes, Duncan;
- Freeman, Colin;
- Dhalla, Fatima;
- Patel, Smita Y.;
- Popitsch, Niko;
- Ip, Camilla L. C.;
- Roberts, Hannah E.;
- Salatino, Silvia;
- Lockstone, Helen;
- Lunter, Gerton;
- Taylor, Jenny C.;
- Buck, David;
- Simpson, Michael A.;
- Donnelly, Peter
Publication type:
Article
PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity.
Published in:
Molecular Biology & Evolution, 2018, v. 35, n. 3, p. 719, doi. 10.1093/molbev/msx304
By:
- Wymant, Chris;
- Hall, Matthew;
- Ratmann, Oliver;
- Bonsall, David;
- Golubchik, Tanya;
- Cesare, Mariateresa de;
- Gall, Astrid;
- Cornelissen, Marion;
- Fraser, Christophe;
- Consortium, STOP-HCV
Publication type:
Article
Illumina and Nanopore methods for whole genome sequencing of hepatitis B virus (HBV).
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-43524-9
By:
- McNaughton, Anna L.;
- Roberts, Hannah E.;
- Bonsall, David;
- de Cesare, Mariateresa;
- Mokaya, Jolynne;
- Lumley, Sheila F.;
- Golubchik, Tanya;
- Piazza, Paolo;
- Martin, Jacqueline B.;
- de Lara, Catherine;
- Brown, Anthony;
- Ansari, M. Azim;
- Bowden, Rory;
- Barnes, Eleanor;
- Matthews, Philippa C.
Publication type:
Article
Transfusion-transmitted hepatitis C: A cluster of cases in transfusion-dependent thalassaemia patients in Sri Lanka.
Published in:
Transfusion Medicine, 2020, v. 30, n. 5, p. 377, doi. 10.1111/tme.12660
By:
- Perera, Shiromi;
- Bonsall, David;
- Niriella, Madunil A.;
- Allen, Angela;
- Peries, Anura C.;
- Nelumdeniya, Udaya B.;
- Dissanayake, Randima;
- Silva, Ishari;
- de Cesare, Mariateresa;
- Klenerman, Paul;
- Weatherall, David J.;
- Roberts, David J.;
- Premawardhena, Anuja P.
Publication type:
Article
Corrigendum: Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.
Published in:
Nature Communications, 2016, v. 7, n. 4, p. 11465, doi. 10.1038/ncomms11465
By:
- Bradley, Phelim;
- Gordon, N. Claire;
- Walker, Timothy M.;
- Dunn, Laura;
- Heys, Simon;
- Huang, Bill;
- Earle, Sarah;
- Pankhurst, Louise J.;
- Anson, Luke;
- de Cesare, Mariateresa;
- Piazza, Paolo;
- Votintseva, Antonina A.;
- Golubchik, Tanya;
- Wilson, Daniel J.;
- Wyllie, David H.;
- Diel, Roland;
- Niemann, Stefan;
- Feuerriegel, Silke;
- Kohl, Thomas A.;
- Ismail, Nazir
Publication type:
Article
Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis.
Published in:
Nature Communications, 2015, v. 6, n. 12, p. 10063, doi. 10.1038/ncomms10063
By:
- Bradley, Phelim;
- Gordon, N. Claire;
- Walker, Timothy M.;
- Dunn, Laura;
- Heys, Simon;
- Huang, Bill;
- Earle, Sarah;
- Pankhurst, Louise J.;
- Anson, Luke;
- de Cesare, Mariateresa;
- Piazza, Paolo;
- Votintseva, Antonina A.;
- Golubchik, Tanya;
- Wilson, Daniel J.;
- Wyllie, David H.;
- Diel, Roland;
- Niemann, Stefan;
- Feuerriegel, Silke;
- Kohl, Thomas A.;
- Ismail, Nazir
Publication type:
Article
Phylogenetic Analysis of Hepatitis C Virus Infections in a Large Belgian Cohort Using Next-Generation Sequencing of Full-Length Genomes.
Published in:
Viruses (1999-4915), 2023, v. 15, n. 12, p. 2391, doi. 10.3390/v15122391
By:
- Christensen, Kasper T.;
- Pierard, Florian;
- Bonsall, David;
- Bowden, Rory;
- Barnes, Eleanor;
- Florence, Eric;
- Ansari, M. Azim;
- Nguyen, Dung;
- de Cesare, Mariateresa;
- Nevens, Frederik;
- Robaeys, Geert;
- Schrooten, Yoeri;
- Busschots, Dana;
- Simmonds, Peter;
- Vandamme, Anne-Mieke;
- Van Wijngaerden, Eric;
- Dierckx, Tim;
- Cuypers, Lize;
- Van Laethem, Kristel
Publication type:
Article
Epstein-Barr virus reactivation in sepsis due to community-acquired pneumonia is associated with increased morbidity and an immunosuppressed host transcriptomic endotype.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-66713-3
By:
- Goh, Cyndi;
- Burnham, Katie L.;
- Ansari, M. Azim;
- de Cesare, Mariateresa;
- Golubchik, Tanya;
- Hutton, Paula;
- Overend, Lauren E.;
- Davenport, Emma E.;
- Hinds, Charles J.;
- Bowden, Rory;
- Knight, Julian C.
Publication type:
Article
Oxford Nanopore MinION Sequencing Enables Rapid Whole Genome Assembly of Rickettsia typhi in a Resource-Limited Setting.
Published in:
American Journal of Tropical Medicine & Hygiene, 2020, v. 102, n. 2, p. 408, doi. 10.4269/ajtmh.19-0383
By:
- Elliott, Ivo;
- Batty, Elizabeth M.;
- Ming, Damien;
- Robinson, Matthew T.;
- Nawtaisong, Pruksa;
- de Cesare, Mariateresa;
- Newton, Paul N.;
- Bowden, Rory
Publication type:
Article
Chloroplast DNA markers (cpSSRs, SNPs) for Miscanthus, Saccharum and related grasses (Panicoideae, Poaceae).
Published in:
Molecular Breeding, 2010, v. 26, n. 3, p. 539, doi. 10.1007/s11032-010-9451-z
By:
- de Cesare, Mariateresa;
- Hodkinson, Trevor R.;
- Barth, Susanne
Publication type:
Article

Found: 19